NO03G02920.1, NO03G02920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02920.1
Unique NameNO03G02920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1717
Alignment locationchr3:878372..880586 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:878372..880586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02920.1 vs.
Match: EWM29773.1 (isocitrate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 827.4 bits (2136), Expect = 2.100e-236
Identity = 406/447 (90.83%), Postives = 426/447 (95.30%), Query Frame = 0 
Query:    1 MMRSA-FLGSRAAARASSSTLS--SLPLLVTTRSFTRTAMVAAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYDNL 445
            MMRS  F+ SR  ++ SS + S  +L  L+ +RSF+RTA V AKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKK+NVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDF+VDKPGKFEMTFTSTDGTEKK+WNV+DFKGAGVGMAMYNT+ESIRGFAHSCFAYALMKGWPLFLSTKNTILK+YDGRFKDIFEEIY K+YKA+YEA GI+YTHRLIDDMVAQVLK EGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNN  L+KF+LDME AVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTY+NL
Sbjct:    1 MMRSVGFISSRTVSQTSSFSSSPPALYRLMDSRSFSRTAAVGAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKFNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFVVDKPGKFEMTFTSTDGTEKKTWNVFDFKGAGVGMAMYNTDESIRGFAHSCFAYALMKGWPLFLSTKNTILKKYDGRFKDIFEEIYEKEYKAQYEAMGITYTHRLIDDMVAQVLKSEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNPILTKFSLDMEAAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYENL 447
The following BLAST results are available for this feature:
BLAST of NO03G02920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29773.12.100e-23690.83isocitrate dehydrogenase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02920NO03G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02920.1NO03G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02920.1.cds1NO03G02920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02920.1.cds2NO03G02920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02920.1.cds3NO03G02920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02920.1 ID=NO03G02920.1|Name=NO03G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp
AGGGGATAGGCAACGCAAGGCTAGCATCCAAAGCTCCTTGAGCCATACGT
AAAGTAAGTATCAAGTATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGG
CCGCTCGAGCATCCTCCTCGACGCTCTCTTCGCTACCTCTGCTGGTGACA
ACTCGCTCTTTCACGCGGACGGCTATGGTGGCGGCCAAGATCAAGGTGGA
AAACCCCGTGGTGGACCTTGACGGTGATGAGATGACGCGCGTGATCTGGA
AGCAGATCAAAGACAAACTCATCCTGCCCTACCTGGATCTGAAGATCGAA
TACTACGACCTTGGCCTGCCTAACCGCGATAAGACTAACGACCAGGTGAC
GGTAGACGCGGCAAACGCCATCAAGAAGTACAACGTGGGCATCAAGTGCG
CTACCATCACGCCAGATGAGCAGCGGGTGGAGGAGTTCAAGCTCAAAGAG
ATGTGGCGCTCGCCCAACGGGACCATCCGTAACATTTTGAACGGAACGGT
CTTCCGTGAGCCCATCGTAATCTCCAACATTCCGCGAATCATTCCGGGCT
GGGTCAAGCCCATCGTTGTCGGCCGCCACGCCTTCGGAGACCAGTATCGC
GCCACGGATTTCATAGTAGACAAGCCTGGCAAATTTGAGATGACGTTTAC
TTCCACAGACGGCACGGAGAAGAAGAGCTGGAACGTGTACGACTTCAAGG
GCGCCGGCGTGGGTATGGCCATGTACAACACCGAGGAGTCCATCCGTGGC
TTCGCGCACTCGTGCTTTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTT
TTTGAGCACGAAGAACACGATCCTGAAGCGGTACGACGGCCGGTTTAAGG
ACATCTTCGAAGAGATCTACGTGAAGGACTACAAGGCCAAGTACGAGGCG
CAGGGCATCAGCTACACGCACCGCTTGATCGACGACATGGTTGCGCAGGT
ACTCAAGGGCGAGGGCGGCGTTGTCTGGGCCTGCAAAAATTACGACGGCG
ACGTGCAGTCCGACATCGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATG
ACCTCGGTCCTTATCACGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGC
GCATGGCACCGTCACCCGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCA
CCAGCACCAATCCCATCGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAG
CACCGCGCCAAGCTGGACAACAACACGGACCTGTCCAAATTCGCGCTGGA
TATGGAGTTGGCCGTGATCAAGACAGTTGAGAAGGGCTTCATGACCAAGG
ATCTGGCCATCTGCGTGCATGGATGGACCGTCAGCCCCGACAAGTACCTT
ACCACGGACGCCTTCCTGGATAAGGTCAAGCTCACTTACGACAACCTTTA
CGACCACGTCACGTTGTAATCAACTGGCTTTTGGGGAATGGAGGGCCAAG
TCGGAAAGAGAAGCGGTGGGGGTGTGCCGCAGGATGATTGTACGGGGAGG
TGTACAAGGGAGAGGCACGTGCAAGACAAGGAGCCTGTACCTGTTACTTT
AGTTCGTCGAGGAAGGGAAGGAGAGGGAGAGTATATTTTCCGAACATTTT
GACCTTTTCACAGAAAAGCAGGCGCACAAGATCAGCTGTCTCTATAGCTG
TTTCTTGTCGGGCTGAAAGAGGTAAAAGAAAGAGAGAAAGAGTAAAGAAG
GAAATCGTATCCGTCAA
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protein sequence of NO03G02920.1

>NO03G02920.1-protein ID=NO03G02920.1-protein|Name=NO03G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MMRSAFLGSRAAARASSSTLSSLPLLVTTRSFTRTAMVAAKIKVENPVVD
LDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAAN
AIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPI
VISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGT
EKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKN
TILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEG
GVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVT
RHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAV
IKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYDNLYDHVTL
*
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mRNA from alignment at chr3:878372..880586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02920.1 ID=NO03G02920.1|Name=NO03G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp|location=Sequence derived from alignment at chr3:878372..880586+ (Nannochloropsis oceanica)
AGGGGATAGGCAACGCAAGGCTAGCATCCAAAGCTCCTTGAGCCATACGT
AAAGTAAGTATCAAGTATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGG
CCGCTCGAGCATCCTCCTCGACGCTCTCTTCGCTACCTCTGCTGGTGACA
ACTCGCTCTTGTAAGTAAAACGTTTGCATTGTAAGCCGGCATCGCATGTC
ATGGCCGTGGCTGCGGTCTTATCCGCTGTACGCCTCTCGCTGTCCTCTTC
CCCTCCCTATATCCTGGCTGTTCGAATCTCCAGCTTCCTTCCTCTTGCCG
CTTGTGTGTGTGTTGAACTCGGCTTCCAGCTCTGTGTGATTGCGTGTATG
AGGGTGCCTAGTCGCTCATTTTCCCTTGTCGCCATTTCTTTTCCCATTCT
TGTACCCCCCGGAAAACAGTCACGCGGACGGCTATGGTGGCGGCCAAGAT
CAAGGTGGAAAACCCCGTGGTGGACCTTGACGGTGATGAGATGACGCGCG
TGATCTGGAAGCAGATCAAAGACAAACTCATCCTGCCCTACCTGGATCTG
AAGATCGAATACTACGACCTTGGCCTGCCTAACCGCGATAAGACTAACGA
CCAGGTGACGGTAGACGCGGCAAACGCCATCAAGAAGTACAACGTGGGCA
TCAAGTGCGCTACCATCACGCCAGATGAGCAGCGGGTGGAGGAGTTCAAG
CTCAAAGAGATGTGGCGCTCGCCCAACGGGACCATCCGTAACATTTTGAA
CGGAACGGTCTTCCGTGAGCCCATCGTAATCTCCAACATTCCGCGAATCA
TTCCGGGCTGGGTCAAGCCCATCGTTGTCGGCCGCCACGCCTTCGGAGAC
CAGTATCGCGCCACGGATTTCATAGTAGACAAGCCTGGCAAATTTGAGAT
GACGTTTACTTCCACAGACGGCACGGAGAAGAAGAGCTGGAACGTGTACG
ACTTCAAGGGCGCCGGCGTGGGTATGGCCATGTACAACACCGAGGAGGTG
GGTGGGTGTGGTTGATTTCTCAATTTAGATTGTATCTTTGGTTGATTTCT
CGATATATAGTTTAAGGAGAGAAGTTTACATGTCTTGTTGTGTGTGTTGT
CTATACCTTAATCCTCCAGTTGAGCTTCCTCGCTTGTATACTATCCGTTC
CTAATTGGTTACTGACTCATCAAACATCTCACATCAACACCCCACCGCTT
CTTTTTTTTTCTATCACACATCAACCCCACATTCAGTCCATCCGTGGCTT
CGCGCACTCGTGCTTTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTTTT
TGAGCACGAAGAACACGATCCTGAAGCGGTACGACGGCCGGTTTAAGGAC
ATCTTCGAAGAGATCTACGTGAAGGACTACAAGGCCAAGTACGAGGCGCA
GGGCATCAGCTACACGCACCGCTTGATCGACGACATGGTTGCGCAGGTAC
TCAAGGGCGAGGGCGGCGTTGTCTGGGCCTGCAAAAATTACGACGGCGAC
GTGCAGTCCGACATCGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATGAC
CTCGGTCCTTATCACGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGCGC
ATGGCACCGTCACCCGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCACC
AGCACCAATCCCATCGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAGCA
CCGCGCCAAGCTGGACAACAACACGGACCTGTCCAAATTCGCGCTGGATA
TGGAGTTGGCCGTGATCAAGACAGTTGAGAAGGGCTTCATGACCAAGGAT
CTGGCCATCTGCGTGCATGGATGGACCGTCAGCCCCGACAAGTACCTTAC
CACGGACGCCTTCCTGGATAAGGTCAAGCTCACTTACGACAACCTTTACG
ACCACGTCACGTTGTAATCAACTGGCTTTTGGGGAATGGAGGGCCAAGTC
GGAAAGAGAAGCGGTGGGGGTGTGCCGCAGGATGATTGTACGGGGAGGTG
TACAAGGGAGAGGCACGTGCAAGACAAGGAGCCTGTACCTGTTACTTTAG
TTCGTCGAGGAAGGGAAGGAGAGGGAGAGTATATTTTCCGAACATTTTGA
CCTTTTCACAGAAAAGCAGGCGCACAAGATCAGCTGTCTCTATAGCTGTT
TCTTGTCGGGCTGAAAGAGGTAAAAGAAAGAGAGAAAGAGTAAAGAAGGA
AATCGTATCCGTCAA
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Coding sequence (CDS) from alignment at chr3:878372..880586+

>NO03G02920.1 ID=NO03G02920.1|Name=NO03G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr3:878372..880586+ (Nannochloropsis oceanica)
ATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGGCCGCTCGAGCATCCTC
CTCGACGCTCTCTTCGCTACCTCTGCTGGTGACAACTCGCTCTTTCACGC
GGACGGCTATGGTGGCGGCCAAGATCAAGGTGGAAAACCCCGTGGTGGAC
CTTGACGGTGATGAGATGACGCGCGTGATCTGGAAGCAGATCAAAGACAA
ACTCATCCTGCCCTACCTGGATCTGAAGATCGAATACTACGACCTTGGCC
TGCCTAACCGCGATAAGACTAACGACCAGGTGACGGTAGACGCGGCAAAC
GCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCTACCATCACGCCAGA
TGAGCAGCGGGTGGAGGAGTTCAAGCTCAAAGAGATGTGGCGCTCGCCCA
ACGGGACCATCCGTAACATTTTGAACGGAACGGTCTTCCGTGAGCCCATC
GTAATCTCCAACATTCCGCGAATCATTCCGGGCTGGGTCAAGCCCATCGT
TGTCGGCCGCCACGCCTTCGGAGACCAGTATCGCGCCACGGATTTCATAG
TAGACAAGCCTGGCAAATTTGAGATGACGTTTACTTCCACAGACGGCACG
GAGAAGAAGAGCTGGAACGTGTACGACTTCAAGGGCGCCGGCGTGGGTAT
GGCCATGTACAACACCGAGGAGTCCATCCGTGGCTTCGCGCACTCGTGCT
TTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTTTTTGAGCACGAAGAAC
ACGATCCTGAAGCGGTACGACGGCCGGTTTAAGGACATCTTCGAAGAGAT
CTACGTGAAGGACTACAAGGCCAAGTACGAGGCGCAGGGCATCAGCTACA
CGCACCGCTTGATCGACGACATGGTTGCGCAGGTACTCAAGGGCGAGGGC
GGCGTTGTCTGGGCCTGCAAAAATTACGACGGCGACGTGCAGTCCGACAT
CGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATGACCTCGGTCCTTATCA
CGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGCGCATGGCACCGTCACC
CGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCACCAGCACCAATCCCAT
CGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAGCACCGCGCCAAGCTGG
ACAACAACACGGACCTGTCCAAATTCGCGCTGGATATGGAGTTGGCCGTG
ATCAAGACAGTTGAGAAGGGCTTCATGACCAAGGATCTGGCCATCTGCGT
GCATGGATGGACCGTCAGCCCCGACAAGTACCTTACCACGGACGCCTTCC
TGGATAAGGTCAAGCTCACTTACGACAACCTTTACGACCACGTCACGTTG
TAA
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Synonyms
Publications