NO03G02880, NO03G02880 (gene) Nannochloropsis oceanica

Overview
NameNO03G02880
Unique NameNO03G02880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr3:870366..871577 -

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Properties
Property NameValue
DescriptionRab family gtpase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:870366..871577 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001806Small_GTPase
Homology
BLAST of NO03G02880 vs. NCBI_GenBank
Match: EWM29779.1 (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 362.1 bits (928), Expect = 1.700e-96
Identity = 216/262 (82.44%), Postives = 229/262 (87.40%), Query Frame = 0
Query:   48 AGLSQKTLNIVNNLQPSSVHLKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA--EYTEFMSIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQTXXXXXXXXXXXXXPLGNGSKKQCVI 308
            AGLSQKTLNIVNNLQP+     + XXXXXXXXXXXXXXXXXXXXXXXXXXXX  ++  EYTEFMSIRILLLGDSGVGKTSLMMRYSE+EFAPCLLSTAGVDFKVRHL LEESK+KVKVQIWDTAGQERMHVITRTYYKGSHGIAL+YNL DPDSF+NVNYWMANIQQHAGDKVVK LIGNKADL DRAI YEQGAAMAKE+GF+HF+ETSAK+GANVH AFNALA+DIVRRIEEAQ               LGN  KKQCVI
Sbjct:   41 AGLSQKTLNIVNNLQPAPATFSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGG---LGNNPKKQCVI 299          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: CBJ26357.1 (Rab8C, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 215.7 bits (548), Expect = 2.000e-52
Identity = 109/167 (65.27%), Postives = 135/167 (80.84%), Query Frame = 0
Query:  110 SIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHA--GDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIV 275
            +IRILLLGDSGVGKTSLM R+SED+FAP L+STAGVD+KV+   L+ + K+V+ QIWDTAGQER HVITRTYY+G+HGIAL Y++ D DSFKNVNYWMANIQ HA  G ++ K+++GNK D+ DRAI  + G  +AKEFG V F+E SAK G  V +AF +LA+DIV
Sbjct:  137 TIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQ--TLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAISTKDGQDVAKEFG-VRFFEVSAKNGYGVSDAFYSLAVDIV 300          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: GBG34780.1 (Ras-related protein Rab-8A [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 213.0 bits (541), Expect = 1.300e-51
Identity = 105/173 (60.69%), Postives = 134/173 (77.46%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHL--ALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQ 282
            I+ILLLGDSGVGKTSLM+R+++++F P L+STAGVDFKVR+L   ++   K++K QIWDTAGQER HVITRTYY+G+HGIAL+Y+ A+  SFK ++YWM NI+ HAG  V  VL GNK DL  R I  EQG A A+ FG   FYETSAK+G NV EAF AL++D V R++ ++
Sbjct:  535 IKILLLGDSGVGKTSLMLRFADNQFQPNLMSTAGVDFKVRYLEDPVKTQNKRIKCQIWDTAGQERFHVITRTYYRGAHGIALVYDAANEQSFKQISYWMDNIRSHAGQDVCVVLFGNKVDLPSRVITPEQGRATAEAFG-AQFYETSAKSGVNVLEAFEALSIDAVGRMQASK 706          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_013903992.1 (small rab-related GTPase [Monoraphidium neglectum] >KIZ04973.1 small rab-related GTPase [Monoraphidium neglectum])

HSP 1 Score: 194.1 bits (492), Expect = 6.300e-46
Identity = 89/173 (51.45%), Postives = 131/173 (75.72%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADLAD--RAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQ 282
            I++LL+GDSGVGK+ L++R+SE+ F P  ++T G+DFK++ + L+   K VK+QIWDTAGQER   IT  YY+G+ GI L+Y++ D  SF N+  WM NI+QHA D V K+L+GNK+D+AD  RA+PY +G A+A E+G + F+ETSAK  +NV EAF ++A D+++R+++ Q
Sbjct:   13 IKLLLIGDSGVGKSCLLLRFSEESFTPSFITTIGIDFKIKKIFLD--NKWVKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDEASFNNIRNWMRNIEQHASDTVNKILVGNKSDMADERRAVPYARGKALADEYG-IAFFETSAKDNSNVEEAFTSIARDVMQRLQQEQ 182          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_006407626.1 (ras-related protein RABE1e isoform X2 [Eutrema salsugineum] >ESQ49079.1 hypothetical protein EUTSA_v10021492mg [Eutrema salsugineum])

HSP 1 Score: 188.7 bits (478), Expect = 2.600e-44
Identity = 89/174 (51.15%), Postives = 126/174 (72.41%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283
            I++LL+GDSGVGK+ L++R+S+D F    ++T G+DFK+R   LE   K++K+QIWDTAGQER   IT  YY+G+ GI L+Y++ D  SF N+  WM NI+QHA D V K+L+GNKAD+  + RA+P  +G A+A E+G + F+ETSAKT  NV E F ++A DI +R+ E+ T
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIR--TLEIDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIEQHASDSVNKILVGNKADMDESKRAVPTSRGQALADEYG-IKFFETSAKTKLNVEEVFTSIAKDIKKRLTESDT 186          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_005642967.1 (Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169] >EIE18423.1 Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 188.0 bits (476), Expect = 4.500e-44
Identity = 86/174 (49.43%), Postives = 125/174 (71.84%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283
            I++LL+GDSGVGK+ L++R+SED F    ++T G+DFK++ + ++   K +K+QIWDTAGQER   IT  YY+G+ GI L+Y++ D  SF N+  WM NI+QHA D V KVL+GNK D+  + R +PY QG A+A EFG + F+ETSAK+   V E F ++A D++ R+ ++QT
Sbjct:   12 IKLLLIGDSGVGKSCLLLRFSEDSFTSSFITTIGIDFKIKKILID--NKWIKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDESSFNNIRNWMRNIEQHASDNVNKVLVGNKCDMDESKRRVPYSQGQALADEFG-IQFFETSAKSNIKVDEVFQSIAKDVMLRLRDSQT 182          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: KFK38343.1 (hypothetical protein AALP_AA3G101800 [Arabis alpina])

HSP 1 Score: 187.6 bits (475), Expect = 5.900e-44
Identity = 88/174 (50.57%), Postives = 127/174 (72.99%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283
            I++LL+GDSGVGK+ L++R+S+D F    ++T G+DFK+R + L+   K++K+QIWDTAGQER   IT  YY+G+ GI L+Y++ D  SF N+  WM NI+QHA D V K+L+GNKAD+  + RA+P  +G A+A E+G + F+ETSAKT  NV E F ++A DI +R+ E+ T
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNQNVEEVFLSIAKDIKQRLTESDT 186          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_019187355.1 (PREDICTED: ras-related protein RABE1c-like [Ipomoea nil])

HSP 1 Score: 186.8 bits (473), Expect = 1.000e-43
Identity = 91/174 (52.30%), Postives = 127/174 (72.99%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283
            I++LL+GDSGVGK+ L++R+SED F    ++T G+DFKVR + L+   K++K+QIWDTAGQER   IT  YY+G+ GI L+Y++ D  SF N+  WM NI+QHA D V K+LIGNKAD+  + + +P  +G A+A E+G V F+ETSAKTG NV + F A+A DI +R+ EA +
Sbjct:   11 IKLLLIGDSGVGKSCLLLRFSEDSFTQSYITTIGIDFKVRTIELD--GKRMKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFDNIRNWMKNIEQHASDTVNKILIGNKADMDESKKVVPTSRGQALADEYG-VKFFETSAKTGYNVEQGFFAIAGDIKQRLAEADS 181          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: NP_187601.1 (RAB GTPase homolog E1E [Arabidopsis thaliana] >Q9SF91.1 RecName: Full=Ras-related protein RABE1e; Short=AtRABE1e; AltName: Full=Ras-related protein Rab8E; Short=AtRab8E >AAF23246.1 putative Ras-like GTP-binding protein [Arabidopsis thaliana] >AAM60928.1 putative Ras-like GTP-binding protein [Arabidopsis thaliana] >ABD94081.1 At3g09900 [Arabidopsis thaliana] >BAF01157.1 putative Ras-like GTP-binding protein [Arabidopsis thaliana] >AEE74828.1 RAB GTPase homolog E1E [Arabidopsis thaliana] >OAP01624.1 RABE1e [Arabidopsis thaliana])

HSP 1 Score: 186.4 bits (472), Expect = 1.300e-43
Identity = 87/174 (50.00%), Postives = 127/174 (72.99%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283
            I++LL+GDSGVGK+ L++R+S+D F    ++T G+DFK+R + L+   K++K+QIWDTAGQER   IT  YY+G+ GI L+Y++ D  SF N+  WM NI+QHA D V K+L+GNKAD+  + RA+P  +G A+A E+G + F+ETSAKT  NV + F ++A DI +R+ E+ T
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDT 186          
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_002882643.1 (ras-related protein RABE1e isoform X1 [Arabidopsis lyrata subsp. lyrata] >EFH58902.1 hypothetical protein ARALYDRAFT_478314 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 186.4 bits (472), Expect = 1.300e-43
Identity = 87/174 (50.00%), Postives = 127/174 (72.99%), Query Frame = 0
Query:  111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283
            I++LL+GDSGVGK+ L++R+S+D F    ++T G+DFK+R + L+   K++K+QIWDTAGQER   IT  YY+G+ GI L+Y++ D  SF N+  WM NI+QHA D V K+L+GNKAD+  + RA+P  +G A+A E+G + F+ETSAKT  NV + F ++A DI +R+ E+ T
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDT 186          
The following BLAST results are available for this feature:
BLAST of NO03G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29779.11.700e-9682.44rab family gtpase [Nannochloropsis gaditana][more]
CBJ26357.12.000e-5265.27Rab8C, RAB family GTPase [Ectocarpus siliculosus][more]
GBG34780.11.300e-5160.69Ras-related protein Rab-8A [Aurantiochytrium sp. F... [more]
XP_013903992.16.300e-4651.45small rab-related GTPase [Monoraphidium neglectum]... [more]
XP_006407626.12.600e-4451.15ras-related protein RABE1e isoform X2 [Eutrema sal... [more]
XP_005642967.14.500e-4449.43Rab8/RabE-family small GTPase [Coccomyxa subellips... [more]
KFK38343.15.900e-4450.57hypothetical protein AALP_AA3G101800 [Arabis alpin... [more]
XP_019187355.11.000e-4352.30PREDICTED: ras-related protein RABE1c-like [Ipomoe... [more]
NP_187601.11.300e-4350.00RAB GTPase homolog E1E [Arabidopsis thaliana] >Q9S... [more]
XP_002882643.11.300e-4350.00ras-related protein RABE1e isoform X1 [Arabidopsis... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005607NSK005607Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02880.1NO03G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572339gene_1480Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Rab8Cgene905Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02880.1NO03G02880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02880 ID=NO03G02880|Name=NO03G02880|organism=Nannochloropsis oceanica|type=gene|length=1212bp
ATGGAGACTGCCTCTCTGAACGCGAGgtaagtgctgaggacagtaagaat
gtctatatttgatcagtgggggccgcttgggcttgcctaccaggctcaaa
tttgcctcccatcatcctaatacaagCACGCGCGCTTCTTCGACTGCCGG
TCCCAGGGAAGGCTCATCGCTTCACCCCTCGCCTGCACCGTCGCCACGCA
GCAGCGGTAGATCACGGAGCAAGTCCAGCAGCAAGCGCCAGGCCGGCTTG
TCCCAAAAGACACTAAATATTGTCAACAACTTGCAGCCCTCCTCTGTGgt
atgtatatcgggcactcttccattccacggttgcctgcccccttcacagt
gatgttgttcatattctcattcttggcgtaaacaatttattttacagCAT
TTAAAAGAGAGGGAAGACGAGGAAGAAGAGCGATTACTGGCATTAGAGGA
GAAGAGGAGGCAGGCGGCAGCCAAAGAGTCCTGCTCGTTATCCTCTGCGT
CCGCGGCGGAGTACACAGAATTTATGAGTATACGCATCCTTTTGCTGGGC
GATTCAGgtaccggtcttgaaaattaatatgctgacgaatgtcctactgt
tgaaaattcaagtccttctcgcctcttttttgatttctcacagGCGTGGG
CAAGACAAGTCTGATGATGCGGTACTCGGAGGACGAGTTTGCACCCTGTT
TATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGGCATCTGGCGCTGGAG
GAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGACACGGCGGGACAGGA
GCGCATGCACGTCATTACACGCACATACTACAAGGGCAGCCACGGCATAG
CGCTAATCTACAACCTGGCGGACCCGGACTCATTCAAGAACGTAAACTAC
TGGATGGCTAATATCCAGCAGCATGCGGGTGACAAGGTGGTGAAAGTTTT
GATCGGCAACAAGGCTGACCTCGCCGATCGCGCAATTCCCTACGAACAGG
GCGCCGCCATGGCCAAGGAATTTGGCTTCGTACATTTCTATGAGACCTCG
GCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAATGCGCTGGCCATGGA
CATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGGCAGCGGCGGCGGCAG
CGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGGAGCAAGAAACAGTGC
GTGATTTGTTGA
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protein sequence of NO03G02880.1

>NO03G02880.1-protein ID=NO03G02880.1-protein|Name=NO03G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
METASLNASTRASSTAGPREGSSLHPSPAPSPRSSGRSRSKSSSKRQAGL
SQKTLNIVNNLQPSSVHLKEREDEEEERLLALEEKRRQAAAKESCSLSSA
SAAEYTEFMSIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVR
HLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSF
KNVNYWMANIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVH
FYETSAKTGANVHEAFNALAMDIVRRIEEAQTEAAAAAAMAAGGGPLGNG
SKKQCVIC*
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Synonyms
Publications