NO03G02880.1, NO03G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02880.1
Unique NameNO03G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length927
Alignment locationchr3:870366..871577 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:870366..871577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02880.1 vs.
Match: EWM29779.1 (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 417.5 bits (1072), Expect = 3.500e-113
Identity = 233/309 (75.40%), Postives = 256/309 (82.85%), Query Frame = 0 
Query:    1 METASLNASTRASSTAGPREGSSLHPSPAPSPRSSGRSRSKSSSKRQAGLSQKTLNIVNNLQPS-SVHLKEREDEEEERLLALEEKRRQAAAKESCSLS-SASAAEYTEFMSIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQTEAAAAAAMAAGGGPLGNGSKKQCVI 308
            ME  S + +TRA+++  P    SL  SP  S     +SR++ S KR AGLSQKTLNIVNNLQP+ +   KER+DEEEERLLA+EEKRRQ AA    S S  +S  EYTEFMSIRILLLGDSGVGKTSLMMRYSE+EFAPCLLSTAGVDFKVRHL LEESK+KVKVQIWDTAGQERMHVITRTYYKGSHGIAL+YNL DPDSF+NVNYWMANIQQHAGDKVVK LIGNKADL DRAI YEQGAAMAKE+GF+HF+ETSAK+GANVH AFNALA+DIVRRIEEAQ E+  A   A G G LGN  KKQCVI
Sbjct:    1 MEDMSPHLTTRATTSVAP----SLQSSPRDS---KVKSRNRGSGKRTAGLSQKTLNIVNNLQPAPATFSKERDDEEEERLLAMEEKRRQVAAGSDPSSSLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVA---AFGNGGLGNNPKKQCVI 299
The following BLAST results are available for this feature:
BLAST of NO03G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29779.13.500e-11375.40rab family gtpase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02880NO03G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02880.1NO03G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02880.1.cds1NO03G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02880.1.cds2NO03G02880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02880.1.cds3NO03G02880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02880.1.cds4NO03G02880.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02880.1 ID=NO03G02880.1|Name=NO03G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
ATGGAGACTGCCTCTCTGAACGCGAGCACGCGCGCTTCTTCGACTGCCGG
TCCCAGGGAAGGCTCATCGCTTCACCCCTCGCCTGCACCGTCGCCACGCA
GCAGCGGTAGATCACGGAGCAAGTCCAGCAGCAAGCGCCAGGCCGGCTTG
TCCCAAAAGACACTAAATATTGTCAACAACTTGCAGCCCTCCTCTGTGCA
TTTAAAAGAGAGGGAAGACGAGGAAGAAGAGCGATTACTGGCATTAGAGG
AGAAGAGGAGGCAGGCGGCAGCCAAAGAGTCCTGCTCGTTATCCTCTGCG
TCCGCGGCGGAGTACACAGAATTTATGAGTATACGCATCCTTTTGCTGGG
CGATTCAGGCGTGGGCAAGACAAGTCTGATGATGCGGTACTCGGAGGACG
AGTTTGCACCCTGTTTATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGG
CATCTGGCGCTGGAGGAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGA
CACGGCGGGACAGGAGCGCATGCACGTCATTACACGCACATACTACAAGG
GCAGCCACGGCATAGCGCTAATCTACAACCTGGCGGACCCGGACTCATTC
AAGAACGTAAACTACTGGATGGCTAATATCCAGCAGCATGCGGGTGACAA
GGTGGTGAAAGTTTTGATCGGCAACAAGGCTGACCTCGCCGATCGCGCAA
TTCCCTACGAACAGGGCGCCGCCATGGCCAAGGAATTTGGCTTCGTACAT
TTCTATGAGACCTCGGCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAA
TGCGCTGGCCATGGACATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGG
CAGCGGCGGCGGCAGCGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGG
AGCAAGAAACAGTGCGTGATTTGTTGA
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protein sequence of NO03G02880.1

>NO03G02880.1-protein ID=NO03G02880.1-protein|Name=NO03G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
METASLNASTRASSTAGPREGSSLHPSPAPSPRSSGRSRSKSSSKRQAGL
SQKTLNIVNNLQPSSVHLKEREDEEEERLLALEEKRRQAAAKESCSLSSA
SAAEYTEFMSIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVR
HLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSF
KNVNYWMANIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVH
FYETSAKTGANVHEAFNALAMDIVRRIEEAQTEAAAAAAMAAGGGPLGNG
SKKQCVIC*
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mRNA from alignment at chr3:870366..871577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02880.1 ID=NO03G02880.1|Name=NO03G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at chr3:870366..871577- (Nannochloropsis oceanica)
ATGGAGACTGCCTCTCTGAACGCGAGGTAAGTGCTGAGGACAGTAAGAAT
GTCTATATTTGATCAGTGGGGGCCGCTTGGGCTTGCCTACCAGGCTCAAA
TTTGCCTCCCATCATCCTAATACAAGCACGCGCGCTTCTTCGACTGCCGG
TCCCAGGGAAGGCTCATCGCTTCACCCCTCGCCTGCACCGTCGCCACGCA
GCAGCGGTAGATCACGGAGCAAGTCCAGCAGCAAGCGCCAGGCCGGCTTG
TCCCAAAAGACACTAAATATTGTCAACAACTTGCAGCCCTCCTCTGTGGT
ATGTATATCGGGCACTCTTCCATTCCACGGTTGCCTGCCCCCTTCACAGT
GATGTTGTTCATATTCTCATTCTTGGCGTAAACAATTTATTTTACAGCAT
TTAAAAGAGAGGGAAGACGAGGAAGAAGAGCGATTACTGGCATTAGAGGA
GAAGAGGAGGCAGGCGGCAGCCAAAGAGTCCTGCTCGTTATCCTCTGCGT
CCGCGGCGGAGTACACAGAATTTATGAGTATACGCATCCTTTTGCTGGGC
GATTCAGGTACCGGTCTTGAAAATTAATATGCTGACGAATGTCCTACTGT
TGAAAATTCAAGTCCTTCTCGCCTCTTTTTTGATTTCTCACAGGCGTGGG
CAAGACAAGTCTGATGATGCGGTACTCGGAGGACGAGTTTGCACCCTGTT
TATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGGCATCTGGCGCTGGAG
GAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGACACGGCGGGACAGGA
GCGCATGCACGTCATTACACGCACATACTACAAGGGCAGCCACGGCATAG
CGCTAATCTACAACCTGGCGGACCCGGACTCATTCAAGAACGTAAACTAC
TGGATGGCTAATATCCAGCAGCATGCGGGTGACAAGGTGGTGAAAGTTTT
GATCGGCAACAAGGCTGACCTCGCCGATCGCGCAATTCCCTACGAACAGG
GCGCCGCCATGGCCAAGGAATTTGGCTTCGTACATTTCTATGAGACCTCG
GCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAATGCGCTGGCCATGGA
CATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGGCAGCGGCGGCGGCAG
CGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGGAGCAAGAAACAGTGC
GTGATTTGTTGA
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Coding sequence (CDS) from alignment at chr3:870366..871577-

>NO03G02880.1 ID=NO03G02880.1|Name=NO03G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr3:870366..871577- (Nannochloropsis oceanica)
ATGGAGACTGCCTCTCTGAACGCGAGCACGCGCGCTTCTTCGACTGCCGG
TCCCAGGGAAGGCTCATCGCTTCACCCCTCGCCTGCACCGTCGCCACGCA
GCAGCGGTAGATCACGGAGCAAGTCCAGCAGCAAGCGCCAGGCCGGCTTG
TCCCAAAAGACACTAAATATTGTCAACAACTTGCAGCCCTCCTCTGTGCA
TTTAAAAGAGAGGGAAGACGAGGAAGAAGAGCGATTACTGGCATTAGAGG
AGAAGAGGAGGCAGGCGGCAGCCAAAGAGTCCTGCTCGTTATCCTCTGCG
TCCGCGGCGGAGTACACAGAATTTATGAGTATACGCATCCTTTTGCTGGG
CGATTCAGGCGTGGGCAAGACAAGTCTGATGATGCGGTACTCGGAGGACG
AGTTTGCACCCTGTTTATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGG
CATCTGGCGCTGGAGGAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGA
CACGGCGGGACAGGAGCGCATGCACGTCATTACACGCACATACTACAAGG
GCAGCCACGGCATAGCGCTAATCTACAACCTGGCGGACCCGGACTCATTC
AAGAACGTAAACTACTGGATGGCTAATATCCAGCAGCATGCGGGTGACAA
GGTGGTGAAAGTTTTGATCGGCAACAAGGCTGACCTCGCCGATCGCGCAA
TTCCCTACGAACAGGGCGCCGCCATGGCCAAGGAATTTGGCTTCGTACAT
TTCTATGAGACCTCGGCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAA
TGCGCTGGCCATGGACATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGG
CAGCGGCGGCGGCAGCGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGG
AGCAAGAAACAGTGCGTGATTTGTTGA
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Synonyms
Publications