NO03G02770, NO03G02770 (gene) Nannochloropsis oceanica

Overview
NameNO03G02770
Unique NameNO03G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2364
Alignment locationchr3:784456..786819 -

Link to JBrowse

Properties
Property NameValue
DescriptionWd repeat protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:784456..786819 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO03G02770 vs. NCBI_GenBank
Match: EWM29709.1 (wd repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 723.0 bits (1865), Expect = 7.200e-205
Identity = 404/568 (71.13%), Postives = 436/568 (76.76%), Query Frame = 0
Query:    2 ADDAPINVEQLRFQVVDKDTGQVFRIDEMEQHININAYTLFPSRDELAQRLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQDTIEGQVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGG---GEEAPVTDEASV--SADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTS--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQRHSLT 557
            A D P+N+EQ+RFQVVDKDTGQ+FRIDEMEQHININAYTLFPSRDELAQ+LASS    G  DSDDE+ +SP SGLS  GLSALSSMLGF K+K V RQD +EG VRVSTV+K+GPDFGDLK+SQCLQAHDGPIWTMKFS+ GEFLASAGQSG+VYVW+VG +G S +GG     EAPVTDEA      DV+KLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTAR+ECLHVYPHVDCVT+V FHPKI                                      +PEG+MAVAGLYRGQVFFYQ EGMKYYTQVECRNRHGALKGGKKVTGLCYDTS            X X           XXXXXXXXXXXXXXXXXXXX                      SRLRLYQTEDYSMLCKYKGLTNDHMQIKA+FSEDG+YVISGSENGQIYIWKGTTPQ G AGGLAGLSAPLTFKKDRNTAYEFFP+TEIGG NPPIVSVALFVPA AV  ++KGT +EE+ +  G G  +SKMII+ADYSGKIRVFQRH LT
Sbjct:    6 APDEPMNIEQMRFQVVDKDTGQIFRIDEMEQHININAYTLFPSRDELAQKLASSAVQAG--DSDDETPTSPKSGLSLTGLSALSSMLGFPKKKDVHRQDPVEGLVRVSTVRKEGPDFGDLKLSQCLQAHDGPIWTMKFSIGGEFLASAGQSGIVYVWSVGHSGFSRSGGDGSDREAPVTDEAEAPGGLDVLKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARSECLHVYPHVDCVTAVDFHPKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEGSMAVAGLYRGQVFFYQTEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSHTVAAAFPPSSXGXATTPGPRLQGAXXXXXXXXXXXXXXXXXXXXPGPTPHSVTGAGCEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKASFSEDGKYVISGSENGQIYIWKGTTPQHGHAGGLAGLSAPLTFKKDRNTAYEFFPSTEIGGINPPIVSVALFVPANAVWHAMKGTSYEEEALNAGPGLPISKMIISADYSGKIRVFQRHVLT 571          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: XP_002997586.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68601.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 262.7 bits (670), Expect = 2.700e-66
Identity = 174/513 (33.92%), Postives = 245/513 (47.76%), Query Frame = 0
Query:    3 DDAPINVEQLRFQVVDKDTGQVFRIDEMEQHININAYTLFPSRDELAQRLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQDTIEGQVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQA---EGMKYYTQVECRNRHGALKGGKKVTGLCYDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPP--IVSVALFVPAA 511
            ++  I  +  ++ V +KDTG+VF I ++   +  ++Y++FP+     Q           E++    T  P          +++ ++     KS  ++      V V++ KK+  D  DL ++Q L  H G IWTMKFS  G  L S GQ  ++ VW V           E+A V  E    +D  ++L   P R +                        +TVRLWH +R +CLHV+ H D V +V FHPK D  FLSG FD K RVW++ DG V  +  TP MITAA FNP GT A+ GL  GQ  FYQ    + M YYTQ+ECRN  G+++ G+KVTG+ +D                                                              SR+RL+  ++YS +CKYKGL N H+QIK  FS+DG++VI GSENG +Y+W         A  L  +S   + K+DRN++YEFF A E     PP  IV+VALF PA+
Sbjct:   29 ENKSIGPDDSKYIVKNKDTGEVFDIRDLAS-MPADSYSIFPNDFVAPQE----------EEAKRTKTRRP----------SITKIMSKFPMKSKAKEPIKRNHVPVTSCKKEKRDLEDLCLAQTLSKHTGTIWTMKFSHDGARLVSGGQDAILRVWKV------QISSEEDAKVARE----SDEKRILDAEPERSY------------------------QTVRLWHISREDCLHVFHHPDSVPAVDFHPKEDRYFLSGCFDNKARVWDIPDGCVVSYVQTPVMITAASFNPSGTRAIVGLLNGQCIFYQVNSHQQMNYYTQIECRNSRGSMRKGRKVTGIEFDPE--------------------------------------------------GKYFLVSTNDSRMRLFSVDNYSRICKYKGLVNGHLQIKGRFSQDGDFVICGSENGYVYVW-------NKARYLRSMSIVKSSKQDRNSSYEFFTAAE-----PPNGIVTVALFAPAS 424          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: XP_002286154.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95795.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 257.3 bits (656), Expect = 1.100e-64
Identity = 163/504 (32.34%), Postives = 238/504 (47.22%), Query Frame = 0
Query:  121 LKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWT-------------------------------------VGGAGPSGAGGGEEAPVTDEASVS--------------------ADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCY-----------DTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGA--GAAVSKMIIAADYSGKIRVFQRHS 555
            L V    +AH+GP W   FSL G FLA+ G+ G V +W                                      VG   P   G  + +   ++A+                      A  +++L   P +RF+DHTADVIDLSW+  +FLL+AS+D +VRL+H ++++CLH++ H + V SV F+P  D  F+SG  DKKLR+W++TDGRV++WA  PD+ITAA F  +G  AVAGL+RGQV+FY A+G+KYYTQ+ CRNR G  + GKKVTG+ +             +                                                            SR+RLY   D+ ++ KYKG TN  MQI+A  SE G ++ SGSE+G ++IW      + A      L+  L   KD+  + ++F A++   A  PIV+ + F P  +V ++L  +      +G+        S  ++  DY G +RVF R S
Sbjct:  612 LLVKTIPKAHNGPAWCSAFSLDGRFLATGGEDGNVCIWAVAPKSTNVHPDCVAPXXXXXXXXXXKASEMDDAEIRGVGTDSPLSTGSDQRSHGVEKAAXXXXXXXASAHPLNFIGTGPEVATNLEILSSEPIQRFKDHTADVIDLSWSHTHFLLTASLDSSVRLYHYSKSQCLHLFKHANLVASVAFNPNDDRYFISGGIDKKLRLWSITDGRVRDWAQAPDVITAARFTSDGKYAVAGLFRGQVYFYDADGLKYYTQIACRNRSGKHRMGKKVTGISFVRGERDDWLKAKQNAPSEGGEATLDNQSSLSKLSGVVNEAGNRVARRVSLTFRGGESRAEALRYTERMLVSTNDSRVRLYGLNDFCLIRKYKGHTNYSMQIRARVSESGNFIASGSESGHVFIWNTLDKHRLAK---HNLNMKLHQTKDKARSSDYFEASK---APLPIVTDSAFFPFKSVKEALMSSDVFPFSLGMERVDDDLSSAALLTLDYDGTMRVFLRKS 1109          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: EJK69706.1 (hypothetical protein THAOC_09008, partial [Thalassiosira oceanica])

HSP 1 Score: 252.3 bits (643), Expect = 3.600e-63
Identity = 190/627 (30.30%), Postives = 290/627 (46.25%), Query Frame = 0
Query:   13 RFQVVDKDTGQ------VFRIDEMEQHININAYTLFPSRDELAQRLASSTAGQGGEDS--------DDESTSSPGSGLS-AAGLSALSSMLGFTKRKSVQRQDTIEGQ----VRVSTVKK-----------------------DGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGAG----PSGA----------------GGGEEAPVTDEASVS-----------ADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQA-EGMKYYTQVECRNRHGALKGGKKVTGLCY---------DTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGA--GAAVSKMIIAADYSGKIRVFQRHS 555
            RFQ+ + DTG       VF  D +   I  + Y+  PSR  L  +  SS+  +   D         D+   +S G G++ +A  + L+S +    RK +    + + Q    +R ST  +                       D      L VS    +  GP W   FS  G FLA+AG+SG + +W V  +     P+G                 G  + A  ++++  S           A  +++L   P +R+ DH ADVIDLSW+  NFLL+AS+DK+VRL+H  ++ECLH++ H + V SV FHP  D  F+SG  DKKLR+W+VT GRVKEWA +P +IT   F+P+G  A AGL+RGQV++Y   +G+KYYTQ+ CRNR G  + GKKVTG+ +          TS                                                            SRLRLY   D+ ++ KYKG +N  MQI+A  SE G ++  GSE GQ++IW+ +   +   G     +  +   +++  ++  F A++   ++ PIV+  +F P  ++ ++L  +      +G+        +  I+  DY G++RVF R S
Sbjct:  130 RFQIKNNDTGDAFDMRTVFTEDGLSNSIETD-YSFLPSRAHLTLQRQSSSKWENEFDDATGPSASIDNSDMTSLGRGINFSAKTNRLASKVAANMRKGISELRSSQKQKLPRMRASTADEVPSNAIYVKSRARAPEQCHDMLADSSFNPMLLVSTRESSSHGPGWCASFSQDGRFLATAGESGCLEIWAVAPSSRVLHPNGVVTLPAQEETICTHFSFGDVKLASDSNDSDGSRLRFIGTGPELATNLEILSKEPIQRYTDHDADVIDLSWSHTNFLLTASLDKSVRLYHHTKSECLHLFKHANLVASVDFHPSDDRYFISGGVDKKLRLWDVTSGRVKEWAQSPSVITTVRFSPDGKYACAGLFRGQVYWYSVDDGLKYYTQIACRNRSGKHRQGKKVTGISFVRAERDDWLSTSANPPMTTPDCEDSEIGHSIAKKLSHSGREVAARLSTLRGNGAKAPDALRYTERMLVSTNDSRLRLYNLNDFCLIRKYKGNSNLSMQIRARVSESGSHIACGSETGQVFIWETSDKSRRRVG-----NHMMDKAREKAMSHASFEASK---SDLPIVTDTVFFPGKSLREALASSDVFPFALGMDRVDDDLSNAAILTLDYDGRMRVFLRKS 747          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: CBN78060.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 251.9 bits (642), Expect = 4.700e-63
Identity = 203/442 (45.93%), Postives = 260/442 (58.82%), Query Frame = 0
Query:  115 GPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVG-------------------GAGP-------------------------------SGAGGGEEAPVTDEASVSADVI-------------------------------KLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGL----------CYDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAA 466
            G D+  + + QCL+ H+GP+WTMKF++RG  LA+ GQ G V +W +                    GA P                                G G  E    T+  S ++ ++                               ++   +P R F  H +D++DLSW+  +FL SASID TV LWH  R E L  + H D VTSVHFHP  DH+FL+G FDK+LR+W + DGRV +W    DM++AA F+P+G +A AGL+ G+V FY    ++YYTQ+ CRNRHG+ + GKKVTGL          C D  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SRLR+Y  ++++M  K+KGL ND +QIKA+FS DG +V+SGSE+GQ+Y+W     +Q  A
Sbjct:  239 GKDWQSMHMVQCLRYHEGPVWTMKFNVRGTRLATGGQDGKVVIWDLAVPPGSTAAATTEVVRDGSEGASPPMEGDGVDANTNGGADAQESSSSGVETSSTLEGEGSRETLRKTESMSCASTILSDDGAASVGDGSSDLGLSGSSGERGDSWSGSEVFAPTPVRVFEGHKSDIVDLSWSHSDFLCSASIDHTVMLWHPIREERLGTFTHPDFVTSVHFHPLDDHIFLTGCFDKRLRLWKIPDGRVVDWVQCQDMVSAASFSPDGKLAAAGLFNGRVMFYHTTDLRYYTQIHCRNRHGSKRRGKKVTGLDFIETSRLHPCGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDSRLRVYDLDNFAMTSKFKGLVNDGIQIKASFSTDGMFVVSGSEDGQVYLWNSKQRRQRTA 680          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: XP_005643702.1 (WD40 repeat-like protein [Coccomyxa subellipsoidea C-169] >EIE19158.1 WD40 repeat-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 238.4 bits (607), Expect = 5.400e-59
Identity = 175/555 (31.53%), Postives = 259/555 (46.67%), Query Frame = 0
Query:   16 VVDKDTGQVFRIDEMEQHININAYTLFPSRDELAQRLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQDTIEG------QVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAE---GMKYYTQVECRNRHGALKGGKKVTGLCYDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLC---------KYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIW-KGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQ 552
            V D DTG+   + +     ++N   LF    E A              +  E+ S PGS  +A   + L + +   +  S++  D   G       V+V    K   +   L V Q L AH+G IWTMKFS  G++LASAGQ   V VW V           EE P            ++LR++P+R F  HTADV+DL+W+K  FLL+AS+DKTVRLWH +  +CL V+ H D VTS+ FHP  D  F+SG+ D K+RVWN+ + RV +WA+  +M+TA  F P+G  AV G  +G+  FYQ E    ++Y  Q++ +NR G    G+K+TG+ +                                                               SR+RLY  E  +  C         KYKG  N + QI+ TFS DG ++I GS++G +Y+W  G    + A  G       +T  ++++ +YE F       A+  IV+VALF P  A            +   + +  A+ ++I+ A Y+G+I+VF+
Sbjct:   70 VKDLDTGRAINVLKKYTIRDLNTGQLFVVDAEPA--------------TASEAASEPGSPKTAP--NKLVTDVSSGREMSMEEFDRALGLHTALEPVKVQAHSKLVKELTHLCVIQELNAHNGVIWTMKFSKNGKYLASAGQDAAVRVWEV-CLNRGETENAEEGP------------RVLRVAPYRTFAGHTADVLDLAWSKSQFLLTASMDKTVRLWHISMDDCLRVFKHTDFVTSLDFHPVDDKYFISGSIDGKVRVWNIPEQRVVDWADVHEMVTATAFAPDGRRAVVGTMKGRCRFYQCEPSFKLEYQAQIDVKNRRGNTSRGRKITGMQF-------------------------------------------------MPKDPSQLLITSNDSRVRLYDGEPPAAWCRRAGFTLRTKYKGHHNRNTQIRGTFSSDGAFLICGSDDGWVYVWTTGADEDKAACSGPDKYCVAVT--QEKSASYECF------HAHNDIVTVALFAPKTA-----------RRVHRIPSQRALGQVILTAGYNGEIKVFE 527          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: CEO98319.1 (hypothetical protein PBRA_006433 [Plasmodiophora brassicae])

HSP 1 Score: 236.5 bits (602), Expect = 2.000e-58
Identity = 163/527 (30.93%), Postives = 240/527 (45.54%), Query Frame = 0
Query:   28 DEMEQHININAYTLFPSRDELAQRLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQDTIEGQVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEA-SVSADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKK--DRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQ 552
            ++  Q +N+    +FP  D+L +     T        D +        +        + ML       VQ  +    QV+V + KK   D   LK  Q L  H+GP+WTMK+S  G +LA+AGQ  ++ +W V G    G    E++ +   A S+SA   ++L  SP+R F  H +D+IDL+W++ +FLLSAS+DK+VRLWH +R +CL  + H D VT+V FHP                                           G +  AGLY GQV FYQ++G+KY+TQ++CRNRHG  K G+KVTGL +                                                               SR+RLY  +DYSM  K+KG  N+ +QI+A FSED +Y+ISGS+N  IY+W  +     A  G      P   +K  DRN +YE+F       A+  IV+VAL  P   ++ + +            AG  +  +I+++ Y G+I+VF+
Sbjct:  111 EQRNQRVNLETGEVFPIDDDLPEFDTFDTIRSADPPPDVDEQEIREKKIRT---GFFAKMLHRATVSDVQGSN----QVKVKSHKKSELDMSALKQLQVLNFHNGPVWTMKWSPCGNYLATAGQDAIIRIWLVCG----GDAKIEDSTLVPSAPSMSAFGQRVLHPSPYREFAGHKSDIIDLAWSRSSFLLSASMDKSVRLWHVSRTQCLSSFQHADFVTAVAFHPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLTAAGLYNGQVVFYQSDGLKYFTQIDCRNRHGKHKRGRKVTGLQF--------------------------------------------------TGDGKQILISTNDSRVRLYDMDDYSMTMKFKGHENESLQIRAHFSEDYQYIISGSDNSDIYVWSTSKDYTSAIKG------PSIMRKSNDRNDSYEYFK------AHSGIVTVALLAPERTLLFATR---------AAPAGGPIRHIIVSSGYDGRIKVFE 555          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: XP_008911165.1 (hypothetical protein PPTG_15645 [Phytophthora parasitica INRA-310] >ETI38077.1 hypothetical protein F443_16090 [Phytophthora parasitica P1569] >ETK78297.1 hypothetical protein L915_15635 [Phytophthora parasitica] >ETL31727.1 hypothetical protein L916_15531 [Phytophthora parasitica] >ETM38124.1 hypothetical protein L914_15486 [Phytophthora parasitica] >ETN03392.1 hypothetical protein PPTG_15645 [Phytophthora parasitica INRA-310] >ETO66848.1 hypothetical protein F444_16075 [Phytophthora parasitica P1976] >ETP07962.1 hypothetical protein F441_15919 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 234.2 bits (596), Expect = 1.000e-57
Identity = 166/556 (29.86%), Postives = 248/556 (44.60%), Query Frame = 0
Query:    7 INVEQLRFQVVDKDTGQVFRIDEMEQHININAYTLFPSRDELAQRLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQDTIEGQVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQA---EGMKYYTQVECRNRHGALKGGKKVTGLCYDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPP--IVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQRHSLTV 558
            I+ +  ++ V +KDTG+VF I ++   +  ++Y++FP+     Q           E++    T  P          +++ ++     KS  ++ T    V V++ KK+  D  DL ++Q L  H G IWTMKFS  G  L S GQ  ++ VW V           E+A +  E    +D   +L   P R ++ HT  ++D+SW++ NF+LSAS+DKTVRLWH +R +CLHV+ H D                                                       A+ GL  GQ  FYQ    + M YYTQ+ECRN  G+++ G+KVTG+ +D                                                              SR+RL+  ++YS +CKYKGL N H+QIK  FS+DG++VI GSENG +Y+W         A  L  +S   + K+DRN++YEFF A E     PP  IV+VALF P A+    +K        V      A + +I++A Y G I+ F+R + +V
Sbjct:   85 IDPDDSKYIVKNKDTGEVFDIRDLSS-MPADSYSIFPNDFVAPQE----------EEAKRTRTRRP----------SITKIMAKFPIKSKTKEPTKRNHVPVTSCKKEKRDLEDLCLAQTLSKHTGTIWTMKFSHDGARLVSGGQDAILRVWKV------QISSEEDAKLARE----SDEKHILDAEPERSYQGHTMPIVDVSWSRSNFILSASMDKTVRLWHISREDCLHVFHHPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIVGLLNGQCIFYQVNSHQQMNYYTQIECRNSRGSMRKGRKVTGIEFDPE--------------------------------------------------GKYFLVSTNDSRMRLFSVDNYSRICKYKGLVNGHLQIKGRFSQDGDFVICGSENGSVYVW-------NKARYLRSMSIVKSSKQDRNSSYEFFTAAE-----PPNGIVTVALFAP-ASTFAMVKSKLEASDDVNTN---ACTGLIVSASYDGCIKFFERSAKSV 543          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: ETL84955.1 (hypothetical protein L917_15353 [Phytophthora parasitica])

HSP 1 Score: 234.2 bits (596), Expect = 1.000e-57
Identity = 166/556 (29.86%), Postives = 248/556 (44.60%), Query Frame = 0
Query:    7 INVEQLRFQVVDKDTGQVFRIDEMEQHININAYTLFPSRDELAQRLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQDTIEGQVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQA---EGMKYYTQVECRNRHGALKGGKKVTGLCYDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPP--IVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQRHSLTV 558
            I+ +  ++ V +KDTG+VF I ++   +  ++Y++FP+     Q           E++    T  P          +++ ++     KS  ++ T    V V++ KK+  D  DL ++Q L  H G IWTMKFS  G  L S GQ  ++ VW V           E+A +  E    +D   +L   P R ++ HT  ++D+SW++ NF+LSAS+DKTVRLWH +R +CLHV+ H D                                                       A+ GL  GQ  FYQ    + M YYTQ+ECRN  G+++ G+KVTG+ +D                                                              SR+RL+  ++YS +CKYKGL N H+QIK  FS+DG++VI GSENG +Y+W         A  L  +S   + K+DRN++YEFF A E     PP  IV+VALF P A+    +K        V      A + +I++A Y G I+ F+R + +V
Sbjct:   72 IDPDDSKYIVKNKDTGEVFDIRDLSS-MPADSYSIFPNDFVAPQE----------EEAKRTRTRRP----------SITKIMAKFPIKSKTKEPTKRNHVPVTSCKKEKRDLEDLCLAQTLSKHTGTIWTMKFSHDGARLVSGGQDAILRVWKV------QISSEEDAKLARE----SDEKHILDAEPERSYQGHTMPIVDVSWSRSNFILSASMDKTVRLWHISREDCLHVFHHPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIVGLLNGQCIFYQVNSHQQMNYYTQIECRNSRGSMRKGRKVTGIEFDPE--------------------------------------------------GKYFLVSTNDSRMRLFSVDNYSRICKYKGLVNGHLQIKGRFSQDGDFVICGSENGSVYVW-------NKARYLRSMSIVKSSKQDRNSSYEFFTAAE-----PPNGIVTVALFAP-ASTFAMVKSKLEASDDVNTN---ACTGLIVSASYDGCIKFFERSAKSV 530          
BLAST of NO03G02770 vs. NCBI_GenBank
Match: XP_018496726.1 (PREDICTED: WD repeat-containing protein 44 [Galendromus occidentalis])

HSP 1 Score: 234.2 bits (596), Expect = 1.000e-57
Identity = 163/485 (33.61%), Postives = 226/485 (46.60%), Query Frame = 0
Query:  100 DTIEGQVRVSTVKKD-GPDFGDLKVSQCLQA-HDGPIWTMKFSLRGEFLASAGQSGVVYVWTVGGA---------GPSGAGGGEEAPVTD--------------EASVSADVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEW----ANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQRHSL 556
            DT + +++V+T  K+   DF  ++  Q ++  H G IWTMKFS  G  LASAGQ  V+ VW +  A             A    E  +T+              +  ++A+       +P   +  HTADV+DLSW+K  F+LS+S+DKTVRLWH +RAECL V+ HV+ VT++ FHP+ D  FLSG+ D KLR+WN+ D +V  W         +IT A F   G  AV G Y G+  FY  + +KYYTQ+  R+  G    GKK++G+                                                                 SR+RLY   D S+ CKY+GL N   QIKATFS DG YVISGSEN   YIWK               S   + ++DRN  +E     E        V+ A+F P A ++  +K          V +  A + +I++AD+ G IRVF  HS+
Sbjct:  365 DTQQDKIKVTTSSKNQKSDFDGIREVQAIRGIHQGAIWTMKFSHCGRLLASAGQDHVLRVWVLRDAFEHFSEIRRKSQNASRDREDSITEASMMDQRDKEETNSQNEINAEDRGPFMPTPFVVYEGHTADVLDLSWSKSYFVLSSSMDKTVRLWHISRAECLCVFHHVEFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVHLWNELEGTHTKLITCANFCQNGKFAVVGSYDGRCVFYTTDQLKYYTQIAVRSSRGKNSAGKKISGI--------------------------------------------------EPMPGEDKILVTSNDSRIRLYDLRDLSLSCKYRGLVNVSSQIKATFSPDGRYVISGSENAFTYIWKTYHDH----------STFSSARRDRNAFWENIKVHEAS------VTSAVFAPKADII--MKQLDDALIPPSVASETAKNYVIVSADFRGDIRVF-AHSM 780          
The following BLAST results are available for this feature:
BLAST of NO03G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29709.17.200e-20571.13wd repeat protein [Nannochloropsis gaditana][more]
XP_002997586.12.700e-6633.92conserved hypothetical protein [Phytophthora infes... [more]
XP_002286154.11.100e-6432.34predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK69706.13.600e-6330.30hypothetical protein THAOC_09008, partial [Thalass... [more]
CBN78060.14.700e-6345.93conserved unknown protein [Ectocarpus siliculosus][more]
XP_005643702.15.400e-5931.53WD40 repeat-like protein [Coccomyxa subellipsoidea... [more]
CEO98319.12.000e-5830.93hypothetical protein PBRA_006433 [Plasmodiophora b... [more]
XP_008911165.11.000e-5729.86hypothetical protein PPTG_15645 [Phytophthora para... [more]
ETL84955.11.000e-5729.86hypothetical protein L917_15353 [Phytophthora para... [more]
XP_018496726.11.000e-5733.61PREDICTED: WD repeat-containing protein 44 [Galend... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005619NSK005619Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02770.2NO03G02770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G02770.1NO03G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667405gene_1468Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100124g3gene919Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02770.2NO03G02770.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G02770.1NO03G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02770 ID=NO03G02770|Name=NO03G02770|organism=Nannochloropsis oceanica|type=gene|length=2364bp
AAACACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGA
GCTGCCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCC
GACCAGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATG
CGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACG
GGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGC
ATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCA
GCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCC
CCAGGAAgtaagtagtgatgcgtgaatagtaacgttgcctctctatttgc
caaagcgatgtatgttatgaattccgaccttcttcactgatgtggtagaa
agcttgtcgctggggatatcgcagcttatctctcacagccccctttgccc
ttcatcgttcaagtgcacatgcttctctgctcacgacactcctcactcta
ttcacatccacttttgcccgcaattactcagGTGGCCTGTCGGCAGCAGG
ACTGTCCGCCTTGTCATCTATGCTGGGATTCACCAAGCGAAAGAGCGTAC
AGCGGCAGGACACGATCGAAGGGCAAGTGCGCGTGAGCACCGTCAAGAAG
GATGGTCCGGACTTTGGGGACCTGAAGGTCTCTCAGTGCTTGCAGgtgcg
tactttcttgcttttgcatctcttctttccgaacccctcaacccctttca
acttggccatttcttctcttacccacctattcttctcctctgtccttacc
tcacgagGCGCACGACGGGCCCATCTGGACGATGAAGTTCAGTTTGCGGG
GAGAGTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTATGTGTGGACG
GTAGGTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGGAGGCACCTGT
GACGGACGAAGCAAGTGTGAGCGCGGATGTCATCAAGCTGTTGCGTCTGT
CGCCCCACCGGCGATTCCGTGATCACACTGCCGACGTGATTGATCTGTCG
TGGAACAAAGAGAATTTTCTGCTTTCGGCATCAATTGACAAGACCGTGCG
GCTGTGGCACACGGCCCGAGCGGAGTGTTTGCATGTCTACCCGCACGTGG
ACTGCGTCACCTCTGTGCATTTTCACCCCAAGATCGACCATTTGTTTTTA
TCGGGCAATTTTGATAAAAAGCTGCGTGTCTGGAATGTGACCGACGGGCG
GGTCAAGGAGTGGGCGAACACCCCCGACATGATTACAGCCGCCTGCTTCA
ACCCCGAGGGTACCATGGCCGTCGCCGGTCTTTATCGGGGCCAGGTATTT
TTTTATCAGGCGGAAGGCATGAAGTATTACACCCAAGTTGAATGCCGCAA
CCGCCATGGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGCCTGTGCTACG
ACACTTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTCCCTATCCTCT
TTGTCCACATTCGGGCCATCAACCACAGGAGGGAATAACACAAATTCCTC
CTCCTCATCTTCCTCTAGCGTCGTCTCCTCCACGGGCATCCTAGCCGGCG
GGGCAGGCTCGGAACAACTTCTCATTACCACAAACGACTCGCGCCTCCGT
CTGTACCAAACCGAAGATTATTCCATGCTCTGCAAATACAAGGGCCTGAC
GAATGACCACATGCAGATCAAAGCCACTTTTAGTGAGGACGGGGAGTACG
TGATTTCTGGTTCTGAGAACGGACAGATATATATCTGGAAAGGCACCACT
CCGCAACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCGCTCCGCTTAC
CTTCAAGAAGGATCGGAACACAGCCTATGAGTTTTTCCCTGCCACGGAGA
TAGGTGGTGCAAATCCACCAATTGTTTCGGTGGCTCTGTTTGTGCCCGCA
GCCGCTGTGATGCAATCTTTGAAGGGGACGCGGCATGAGGAGCAATGGGT
GGGGGTGGGGGCGGGGGCAGCTGTGAGTAAGATGATCATTGCTGCGGATT
ACTCGGGCAAGATTCGCGTGTTCCAGCGGCATTCCCTGACTGTAGGAAGT
AGTGGGGGAACTAGTCCTGTGAAGACGGCATGAGAAAGGGGAATGGGAAT
GTATTAAGAACACCTGAGAAGAAGGGAGCGCTTGATCGGCGGGCATGTAT
GCATATGCATGGCAAGGTCAGACACACAGGGCTTTTATTTTGGTGGTTTT
AAGGCATCTTCGCGAGGGATGTTGATTTCAGAACGACACAACAAAGCAAT
ATACACCGGAAAGA
back to top

protein sequence of NO03G02770.2

>NO03G02770.2-protein ID=NO03G02770.2-protein|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADV
IKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECL
HVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDM
ITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKK
VTGLCYDTSSQHKAAAAAASLSSLSTFGPSTTGGNNTNSSSSSSSSVVSS
TGILAGGAGSEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATF
SEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYE
FFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSK
MIIAADYSGKIRVFQRHSLTVGSSGGTSPVKTA*
back to top

protein sequence of NO03G02770.1

>NO03G02770.1-protein ID=NO03G02770.1-protein|Name=NO03G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MADDAPINVEQLRFQVVDKDTGQVFRIDEMEQHININAYTLFPSRDELAQ
RLASSTAGQGGEDSDDESTSSPGSGLSAAGLSALSSMLGFTKRKSVQRQD
TIEGQVRVSTVKKDGPDFGDLKVSQCLQAHDGPIWTMKFSLRGEFLASAG
QSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADVIKLLRLSPHRRFRD
HTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHF
HPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAV
AGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSQHKA
AAAAASLSSLSTFGPSTTGGNNTNSSSSSSSSVVSSTGILAGGAGSEQLL
ITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENG
QIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPI
VSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVF
QRHSLTVGSSGGTSPVKTA*
back to top
Synonyms
Publications