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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:784456..786819 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02770.2 vs.
Match: EWM29709.1 (wd repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 659.8 bits (1701), Expect = 5.700e-186 Identity = 343/433 (79.21%), Postives = 366/433 (84.53%), Query Frame = 0
Query: 1 MKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGG---EEAPVTDEASVSA--DVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSQHKAAAAAASLS-SLSTFGPSTTGGNNTNSSSSSSSSVVSSTGILAG-------GAGSEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQRHSLT 421
MKFS+ GEFLASAGQSG+VYVW+VG +G S +GG EAPVTDEA DV+KLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTAR+ECLHVYPHVDCVT+V FHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACF+PEG+MAVAGLYRGQVFFYQ EGMKYYTQVECRNRHGALKGGKKVTGLCYDTSS AAA S S +T GP G +T+ SSS V S G GAG EQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKA+FSEDG+YVISGSENGQIYIWKGTTPQ G AGGLAGLSAPLTFKKDRNTAYEFFP+TEIGG NPPIVSVALFVPA AV ++KGT +EE+ + G G +SKMII+ADYSGKIRVFQRH LT
Sbjct: 139 MKFSIGGEFLASAGQSGIVYVWSVGHSGFSRSGGDGSDREAPVTDEAEAPGGLDVLKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARSECLHVYPHVDCVTAVDFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFSPEGSMAVAGLYRGQVFFYQTEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSHTVAAAFPPSSSGGATTPGPRLQGAPSTSGGHSSSFPVSSGPVSAPGPTPHSVTGAGCEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKASFSEDGKYVISGSENGQIYIWKGTTPQHGHAGGLAGLSAPLTFKKDRNTAYEFFPSTEIGGINPPIVSVALFVPANAVWHAMKGTSYEEEALNAGPGLPISKMIISADYSGKIRVFQRHVLT 571
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp
AAACACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGA
GCTGCCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCC
GACCAGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATG
CGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACG
GGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGC
ATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCA
GCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCC
CCAGGAAGTGGCCTGTCGGCAGCAGGACTGTCCGCCTTGTCATCTATGCT
GGGATTCACCAAGCGAAAGAGCGTACAGCGGCAGGACACGATCGAAGGGC
AAGTGCGCGTGAGCACCGTCAAGAAGGATGGTCCGGACTTTGGGGACCTG
AAGGTCTCTCAGTGCTTGCAGGTGCGTACTTTCTTGCTTTTGCATCTCTT
CTTTCCGAACCCCTCAACCCCTTTCAACTTGGCCATTTCTTCTCTTACCC
ACCTATTCTTCTCCTCTGTCCTTACCTCACGAGGCGCACGACGGGCCCAT
CTGGACGATGAAGTTCAGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGAC
AAAGTGGAGTGGTGTATGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGT
GCTGGGGGAGGAGAGGAGGCACCTGTGACGGACGAAGCAAGTGTGAGCGC
GGATGTCATCAAGCTGTTGCGTCTGTCGCCCCACCGGCGATTCCGTGATC
ACACTGCCGACGTGATTGATCTGTCGTGGAACAAAGAGAATTTTCTGCTT
TCGGCATCAATTGACAAGACCGTGCGGCTGTGGCACACGGCCCGAGCGGA
GTGTTTGCATGTCTACCCGCACGTGGACTGCGTCACCTCTGTGCATTTTC
ACCCCAAGATCGACCATTTGTTTTTATCGGGCAATTTTGATAAAAAGCTG
CGTGTCTGGAATGTGACCGACGGGCGGGTCAAGGAGTGGGCGAACACCCC
CGACATGATTACAGCCGCCTGCTTCAACCCCGAGGGTACCATGGCCGTCG
CCGGTCTTTATCGGGGCCAGGTATTTTTTTATCAGGCGGAAGGCATGAAG
TATTACACCCAAGTTGAATGCCGCAACCGCCATGGAGCCCTCAAGGGCGG
CAAGAAAGTCACCGGCCTGTGCTACGACACTTCTTCCCAGCACAAGGCTG
CTGCCGCTGCCGCCTCCCTATCCTCTTTGTCCACATTCGGGCCATCAACC
ACAGGAGGGAATAACACAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGT
CTCCTCCACGGGCATCCTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCA
TTACCACAAACGACTCGCGCCTCCGTCTGTACCAAACCGAAGATTATTCC
ATGCTCTGCAAATACAAGGGCCTGACGAATGACCACATGCAGATCAAAGC
CACTTTTAGTGAGGACGGGGAGTACGTGATTTCTGGTTCTGAGAACGGAC
AGATATATATCTGGAAAGGCACCACTCCGCAACAGGGAGCGGCGGGAGGG
CTGGCTGGTTTGAGCGCTCCGCTTACCTTCAAGAAGGATCGGAACACAGC
CTATGAGTTTTTCCCTGCCACGGAGATAGGTGGTGCAAATCCACCAATTG
TTTCGGTGGCTCTGTTTGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAG
GGGACGCGGCATGAGGAGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGT
GAGTAAGATGATCATTGCTGCGGATTACTCGGGCAAGATTCGCGTGTTCC
AGCGGCATTCCCTGACTGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAG
ACGGCATGAGAAAGGGGAATGGGAATGTATTAAGAACACCTGAGAAGAAG
GGAGCGCTTGATCGGCGGGCATGTATGCATATGCATGGCAAGGTCAGACA
CACAGGGCTTTTATTTTGGTGGTTTTAAGGCATCTTCGCGAGGGATGTTG
ATTTCAGAACGACACAACAAAGCAATATACACCGGAAAGA back to topprotein sequence of NO03G02770.2 >NO03G02770.2-protein ID=NO03G02770.2-protein|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADV
IKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECL
HVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDM
ITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKK
VTGLCYDTSSQHKAAAAAASLSSLSTFGPSTTGGNNTNSSSSSSSSVVSS
TGILAGGAGSEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATF
SEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYE
FFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSK
MIIAADYSGKIRVFQRHSLTVGSSGGTSPVKTA* back to topmRNA from alignment at chr3:784456..786819- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at chr3:784456..786819- (Nannochloropsis oceanica)
AAACACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGA
GCTGCCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCC
GACCAGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATG
CGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACG
GGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGC
ATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCA
GCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCC
CCAGGAAGTAAGTAGTGATGCGTGAATAGTAACGTTGCCTCTCTATTTGC
CAAAGCGATGTATGTTATGAATTCCGACCTTCTTCACTGATGTGGTAGAA
AGCTTGTCGCTGGGGATATCGCAGCTTATCTCTCACAGCCCCCTTTGCCC
TTCATCGTTCAAGTGCACATGCTTCTCTGCTCACGACACTCCTCACTCTA
TTCACATCCACTTTTGCCCGCAATTACTCAGGTGGCCTGTCGGCAGCAGG
ACTGTCCGCCTTGTCATCTATGCTGGGATTCACCAAGCGAAAGAGCGTAC
AGCGGCAGGACACGATCGAAGGGCAAGTGCGCGTGAGCACCGTCAAGAAG
GATGGTCCGGACTTTGGGGACCTGAAGGTCTCTCAGTGCTTGCAGGTGCG
TACTTTCTTGCTTTTGCATCTCTTCTTTCCGAACCCCTCAACCCCTTTCA
ACTTGGCCATTTCTTCTCTTACCCACCTATTCTTCTCCTCTGTCCTTACC
TCACGAGGCGCACGACGGGCCCATCTGGACGATGAAGTTCAGTTTGCGGG
GAGAGTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTATGTGTGGACG
GTAGGTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGGAGGCACCTGT
GACGGACGAAGCAAGTGTGAGCGCGGATGTCATCAAGCTGTTGCGTCTGT
CGCCCCACCGGCGATTCCGTGATCACACTGCCGACGTGATTGATCTGTCG
TGGAACAAAGAGAATTTTCTGCTTTCGGCATCAATTGACAAGACCGTGCG
GCTGTGGCACACGGCCCGAGCGGAGTGTTTGCATGTCTACCCGCACGTGG
ACTGCGTCACCTCTGTGCATTTTCACCCCAAGATCGACCATTTGTTTTTA
TCGGGCAATTTTGATAAAAAGCTGCGTGTCTGGAATGTGACCGACGGGCG
GGTCAAGGAGTGGGCGAACACCCCCGACATGATTACAGCCGCCTGCTTCA
ACCCCGAGGGTACCATGGCCGTCGCCGGTCTTTATCGGGGCCAGGTATTT
TTTTATCAGGCGGAAGGCATGAAGTATTACACCCAAGTTGAATGCCGCAA
CCGCCATGGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGCCTGTGCTACG
ACACTTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTCCCTATCCTCT
TTGTCCACATTCGGGCCATCAACCACAGGAGGGAATAACACAAATTCCTC
CTCCTCATCTTCCTCTAGCGTCGTCTCCTCCACGGGCATCCTAGCCGGCG
GGGCAGGCTCGGAACAACTTCTCATTACCACAAACGACTCGCGCCTCCGT
CTGTACCAAACCGAAGATTATTCCATGCTCTGCAAATACAAGGGCCTGAC
GAATGACCACATGCAGATCAAAGCCACTTTTAGTGAGGACGGGGAGTACG
TGATTTCTGGTTCTGAGAACGGACAGATATATATCTGGAAAGGCACCACT
CCGCAACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCGCTCCGCTTAC
CTTCAAGAAGGATCGGAACACAGCCTATGAGTTTTTCCCTGCCACGGAGA
TAGGTGGTGCAAATCCACCAATTGTTTCGGTGGCTCTGTTTGTGCCCGCA
GCCGCTGTGATGCAATCTTTGAAGGGGACGCGGCATGAGGAGCAATGGGT
GGGGGTGGGGGCGGGGGCAGCTGTGAGTAAGATGATCATTGCTGCGGATT
ACTCGGGCAAGATTCGCGTGTTCCAGCGGCATTCCCTGACTGTAGGAAGT
AGTGGGGGAACTAGTCCTGTGAAGACGGCATGAGAAAGGGGAATGGGAAT
GTATTAAGAACACCTGAGAAGAAGGGAGCGCTTGATCGGCGGGCATGTAT
GCATATGCATGGCAAGGTCAGACACACAGGGCTTTTATTTTGGTGGTTTT
AAGGCATCTTCGCGAGGGATGTTGATTTCAGAACGACACAACAAAGCAAT
ATACACCGGAAAGA back to topCoding sequence (CDS) from alignment at chr3:784456..786819- >NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr3:784456..786819- (Nannochloropsis oceanica)
ATGAAGTTCAGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGACAAAGTGG
AGTGGTGTATGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGTGCTGGGG
GAGGAGAGGAGGCACCTGTGACGGACGAAGCAAGTGTGAGCGCGGATGTC
ATCAAGCTGTTGCGTCTGTCGCCCCACCGGCGATTCCGTGATCACACTGC
CGACGTGATTGATCTGTCGTGGAACAAAGAGAATTTTCTGCTTTCGGCAT
CAATTGACAAGACCGTGCGGCTGTGGCACACGGCCCGAGCGGAGTGTTTG
CATGTCTACCCGCACGTGGACTGCGTCACCTCTGTGCATTTTCACCCCAA
GATCGACCATTTGTTTTTATCGGGCAATTTTGATAAAAAGCTGCGTGTCT
GGAATGTGACCGACGGGCGGGTCAAGGAGTGGGCGAACACCCCCGACATG
ATTACAGCCGCCTGCTTCAACCCCGAGGGTACCATGGCCGTCGCCGGTCT
TTATCGGGGCCAGGTATTTTTTTATCAGGCGGAAGGCATGAAGTATTACA
CCCAAGTTGAATGCCGCAACCGCCATGGAGCCCTCAAGGGCGGCAAGAAA
GTCACCGGCCTGTGCTACGACACTTCTTCCCAGCACAAGGCTGCTGCCGC
TGCCGCCTCCCTATCCTCTTTGTCCACATTCGGGCCATCAACCACAGGAG
GGAATAACACAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGTCTCCTCC
ACGGGCATCCTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCATTACCAC
AAACGACTCGCGCCTCCGTCTGTACCAAACCGAAGATTATTCCATGCTCT
GCAAATACAAGGGCCTGACGAATGACCACATGCAGATCAAAGCCACTTTT
AGTGAGGACGGGGAGTACGTGATTTCTGGTTCTGAGAACGGACAGATATA
TATCTGGAAAGGCACCACTCCGCAACAGGGAGCGGCGGGAGGGCTGGCTG
GTTTGAGCGCTCCGCTTACCTTCAAGAAGGATCGGAACACAGCCTATGAG
TTTTTCCCTGCCACGGAGATAGGTGGTGCAAATCCACCAATTGTTTCGGT
GGCTCTGTTTGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAGGGGACGC
GGCATGAGGAGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGTGAGTAAG
ATGATCATTGCTGCGGATTACTCGGGCAAGATTCGCGTGTTCCAGCGGCA
TTCCCTGACTGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAGACGGCAT
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