NO03G02740, NO03G02740 (gene) Nannochloropsis oceanica

Overview
NameNO03G02740
Unique NameNO03G02740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length314
Alignment locationchr3:779191..779504 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:779191..779504 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0007275multicellular organism development
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
IPR006780YABBY
Homology
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BLAST of NO03G02740 vs. NCBI_GenBank
Match: KDQ06719.1 (hypothetical protein BOTBODRAFT_39377 [Botryobasidium botryosum FD-172 SS1])

HSP 1 Score: 73.2 bits (178), Expect = 3.800e-10
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:    4 KDTNKSTPKKTTPAKKAAGAKKEPTLYMLYMKKQIAVFKAKNPSLSHKEAFTQLAKAWKTAPENPNKGK 73
            K   K+ PKKTT       AKK P+ Y LYMK  +  +K +NP  +HKEAF ++AK WK APENPN+GK
Sbjct:   14 KPARKAAPKKTTD----GAAKKSPSQYQLYMKNNLPTYKGENPDKTHKEAFAEVAKLWKDAPENPNRGK 78
The following BLAST results are available for this feature:
BLAST of NO03G02740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
KDQ06719.13.800e-1052.17hypothetical protein BOTBODRAFT_39377 [Botryobasid... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02740.1NO03G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02740.1NO03G02740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02740 ID=NO03G02740|Name=NO03G02740|organism=Nannochloropsis oceanica|type=gene|length=314bp
ATGGCTGGCAAAGACACCAATAAGTCTACTCCCAAGAAGACGACCCCCGC
CAAGAAGGCTGCGGGTGCCAAGAAGGAGCCTACCCTTTACATGTTGTACA
TGAAGAAGCAAATTGCCGTCTTCAAGGCTAAGAACCCTTCCCTCTCACAC
AAGGAGGCCTTCACCCAGgttggtgcttcaagacgttcactagcatttat
ttcctgaagcacgtccctccacccacacaagtacacataaatgtattcac
cccattcttacagTTGGCCAAGGCCTGGAAGACCGCCCCCGAGAACCCCA
ACAAGGGCAAGTAA
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protein sequence of NO03G02740.1

>NO03G02740.1-protein ID=NO03G02740.1-protein|Name=NO03G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MAGKDTNKSTPKKTTPAKKAAGAKKEPTLYMLYMKKQIAVFKAKNPSLSH
KEAFTQLAKAWKTAPENPNKGK*
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Synonyms
Publications