NO03G02740.1, NO03G02740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02740.1
Unique NameNO03G02740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length219
Alignment locationchr3:779191..779504 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:779191..779504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G02740.1 vs.
Match: KDQ06719.1 (hypothetical protein BOTBODRAFT_39377 [Botryobasidium botryosum FD-172 SS1])

HSP 1 Score: 73.2 bits (178), Expect = 3.800e-10
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:    4 KDTNKSTPKKTTPAKKAAGAKKEPTLYMLYMKKQIAVFKAKNPSLSHKEAFTQLAKAWKTAPENPNKGK 73
            K   K+ PKKTT       AKK P+ Y LYMK  +  +K +NP  +HKEAF ++AK WK APENPN+GK
Sbjct:   14 KPARKAAPKKTTDG----AAKKSPSQYQLYMKNNLPTYKGENPDKTHKEAFAEVAKLWKDAPENPNRGK 78
The following BLAST results are available for this feature:
BLAST of NO03G02740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KDQ06719.13.800e-1052.17hypothetical protein BOTBODRAFT_39377 [Botryobasid... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02740NO03G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02740.1NO03G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02740.1.cds1NO03G02740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02740.1.cds2NO03G02740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02740.1 ID=NO03G02740.1|Name=NO03G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=219bp
ATGGCTGGCAAAGACACCAATAAGTCTACTCCCAAGAAGACGACCCCCGC
CAAGAAGGCTGCGGGTGCCAAGAAGGAGCCTACCCTTTACATGTTGTACA
TGAAGAAGCAAATTGCCGTCTTCAAGGCTAAGAACCCTTCCCTCTCACAC
AAGGAGGCCTTCACCCAGTTGGCCAAGGCCTGGAAGACCGCCCCCGAGAA
CCCCAACAAGGGCAAGTAA
back to top

protein sequence of NO03G02740.1

>NO03G02740.1-protein ID=NO03G02740.1-protein|Name=NO03G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MAGKDTNKSTPKKTTPAKKAAGAKKEPTLYMLYMKKQIAVFKAKNPSLSH
KEAFTQLAKAWKTAPENPNKGK*
back to top

mRNA from alignment at chr3:779191..779504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02740.1 ID=NO03G02740.1|Name=NO03G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=314bp|location=Sequence derived from alignment at chr3:779191..779504+ (Nannochloropsis oceanica)
ATGGCTGGCAAAGACACCAATAAGTCTACTCCCAAGAAGACGACCCCCGC
CAAGAAGGCTGCGGGTGCCAAGAAGGAGCCTACCCTTTACATGTTGTACA
TGAAGAAGCAAATTGCCGTCTTCAAGGCTAAGAACCCTTCCCTCTCACAC
AAGGAGGCCTTCACCCAGGTTGGTGCTTCAAGACGTTCACTAGCATTTAT
TTCCTGAAGCACGTCCCTCCACCCACACAAGTACACATAAATGTATTCAC
CCCATTCTTACAGTTGGCCAAGGCCTGGAAGACCGCCCCCGAGAACCCCA
ACAAGGGCAAGTAA
back to top

Coding sequence (CDS) from alignment at chr3:779191..779504+

>NO03G02740.1 ID=NO03G02740.1|Name=NO03G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at chr3:779191..779504+ (Nannochloropsis oceanica)
ATGGCTGGCAAAGACACCAATAAGTCTACTCCCAAGAAGACGACCCCCGC
CAAGAAGGCTGCGGGTGCCAAGAAGGAGCCTACCCTTTACATGTTGTACA
TGAAGAAGCAAATTGCCGTCTTCAAGGCTAAGAACCCTTCCCTCTCACAC
AAGGAGGCCTTCACCCAGTTGGCCAAGGCCTGGAAGACCGCCCCCGAGAA
CCCCAACAAGGGCAAGTAA
back to top
Synonyms
Publications