NO03G02730, NO03G02730 (gene) Nannochloropsis oceanica

Overview
NameNO03G02730
Unique NameNO03G02730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length916
Alignment locationchr3:778012..778927 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:778012..778927 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000160phosphorelay signal transduction system
Vocabulary: INTERPRO
TermDefinition
IPR036641HPT_dom_sf
IPR008207Sig_transdc_His_kin_Hpt_dom
Homology
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BLAST of NO03G02730 vs. NCBI_GenBank
Match: EWM29708.1 (hypothetical protein Naga_100124g7 [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 3.000e-12
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 0 
Query:   45 MPTFDEERLRELSTVVDLRDTLLGFIKHGRALVEEVAASCTESAEDCTSRTAKAAHALKGAAKT 109
            +PTFDE RL+ELS VV LR+T+L F+KHGR L+++VA SC   A+    RTAK AHALKGAAKT
Sbjct:   51 VPTFDEGRLKELSQVVPLRETMLDFVKHGRCLLDDVADSCAAPAQKTWDRTAKGAHALKGAAKT 114
The following BLAST results are available for this feature:
BLAST of NO03G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29708.13.000e-1264.06hypothetical protein Naga_100124g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005622NSK005622Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02730.1NO03G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572161gene_1463Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100124g7gene922Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02730.1NO03G02730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02730 ID=NO03G02730|Name=NO03G02730|organism=Nannochloropsis oceanica|type=gene|length=916bp
ACTTGAAGATGACGAAAGAAGACTGAGCAGCGAAAAAACAACACTCCCTC
TCACAGATGGCCACGCAACAGTCCTCATGTACAAGGCAACCATGAGCAAA
TGGGCCTGGGGACATATGCAAACAAGGCATGCAAAGGGAGGGTACAGgta
acgcggcaacaaacacacgacagaagttataataagagggaacttcttga
agaaaccccccgcgggagtctcagagaggagtcctcccctaaaacaacct
cccccgcgctaaaatgaccttccacccatacaaatacagGAGTGTGAGGC
TGCATGGGAAACTGTCTGGGTGGGGGAGGAGTGGGAGGAGCAGCAGCGTT
GACTCATTCTCCTCCTCCAGCCGCGGTCGCGCCCGCCGCCGCTCCTACAC
CACAACCATCACTACCGCCGCCTCCAGACCGCCCCATGCCCACCTTTGAC
GAGGAACGCTTGCGGGAGCTAAGCACCGTAGTAGACTTGCGAGATACATT
GCTCGGATTTATCAAGCATGGTCGGGCGCTCGTGGAGGAGGTGGCCGCGT
CTTGCACAGAATCGGCCGAGGACTGCACCAGCAGGACGGCTAAGGCAGCG
CATGCCTTGAAAGGCGCCGCCAAGACAATCGGGGCCTCGCGGCTCGCTCA
TAGCGCGGAAATTATCGAGTTGAGGGCAAAACAAGGAGAATCATGTGGTT
CGTATGTACCAGATTTGAGCGCCGCCTATGAAGACTTGGCCACGGGAGTG
TCTCAGCGGACGTGGTCCTGACCCATGAGTCTTGCAGTGCGAGTTGTAGT
GCTATCTTTACGAGCGAAAATGGGAAACTATCACCTGAACCTTTTTCATT
CAGCGAAATCAAATCAAAATATGAAATAAGATAAATAATTTGGGCGTGAA
AATTAGAACAACCACA
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protein sequence of NO03G02730.1

>NO03G02730.1-protein ID=NO03G02730.1-protein|Name=NO03G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MGNCLGGGGVGGAAALTHSPPPAAVAPAAAPTPQPSLPPPPDRPMPTFDE
ERLRELSTVVDLRDTLLGFIKHGRALVEEVAASCTESAEDCTSRTAKAAH
ALKGAAKTIGASRLAHSAEIIELRAKQGESCGSYVPDLSAAYEDLATGVS
QRTWS*
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Synonyms
Publications