NO03G02730.1, NO03G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02730.1
Unique NameNO03G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length774
Alignment locationchr3:778012..778927 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:778012..778927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02730.1 vs.
Match: EWM29708.1 (hypothetical protein Naga_100124g7 [Nannochloropsis gaditana])

HSP 1 Score: 75.9 bits (185), Expect = 1.300e-10
Identity = 56/114 (49.12%), Postives = 69/114 (60.53%), Query Frame = 0
Query:    1 MGNCLGGGGVGGAAALTHSPPPAA----VAPAAAPTPQP--SLPPPPDRPMPTFDEERLRELSTVVDLRDTLLGFIKHGRALVEEVAASCTESAEDCTSRTAKAAHALKGAAKT 109
            MGNC GGGG           P A+    VA +  P+PQ          + +PTFDE RL+ELS VV LR+T+L F+KHGR L+++VA SC   A+    RTAK AHALKGAAKT
Sbjct:    1 MGNCFGGGGGRDTRHEGILNPVASEDLLVAQSPLPSPQHFNQKTSNESKLVPTFDEGRLKELSQVVPLRETMLDFVKHGRCLLDDVADSCAAPAQKTWDRTAKGAHALKGAAKT 114          
The following BLAST results are available for this feature:
BLAST of NO03G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29708.11.300e-1049.12hypothetical protein Naga_100124g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02730NO03G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02730.1NO03G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02730.1.cds1NO03G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02730.1 ID=NO03G02730.1|Name=NO03G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
ACTTGAAGATGACGAAAGAAGACTGAGCAGCGAAAAAACAACACTCCCTC
TCACAGATGGCCACGCAACAGTCCTCATGTACAAGGCAACCATGAGCAAA
TGGGCCTGGGGACATATGCAAACAAGGCATGCAAAGGGAGGGTACAGGAG
TGTGAGGCTGCATGGGAAACTGTCTGGGTGGGGGAGGAGTGGGAGGAGCA
GCAGCGTTGACTCATTCTCCTCCTCCAGCCGCGGTCGCGCCCGCCGCCGC
TCCTACACCACAACCATCACTACCGCCGCCTCCAGACCGCCCCATGCCCA
CCTTTGACGAGGAACGCTTGCGGGAGCTAAGCACCGTAGTAGACTTGCGA
GATACATTGCTCGGATTTATCAAGCATGGTCGGGCGCTCGTGGAGGAGGT
GGCCGCGTCTTGCACAGAATCGGCCGAGGACTGCACCAGCAGGACGGCTA
AGGCAGCGCATGCCTTGAAAGGCGCCGCCAAGACAATCGGGGCCTCGCGG
CTCGCTCATAGCGCGGAAATTATCGAGTTGAGGGCAAAACAAGGAGAATC
ATGTGGTTCGTATGTACCAGATTTGAGCGCCGCCTATGAAGACTTGGCCA
CGGGAGTGTCTCAGCGGACGTGGTCCTGACCCATGAGTCTTGCAGTGCGA
GTTGTAGTGCTATCTTTACGAGCGAAAATGGGAAACTATCACCTGAACCT
TTTTCATTCAGCGAAATCAAATCAAAATATGAAATAAGATAAATAATTTG
GGCGTGAAAATTAGAACAACCACA
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protein sequence of NO03G02730.1

>NO03G02730.1-protein ID=NO03G02730.1-protein|Name=NO03G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MGNCLGGGGVGGAAALTHSPPPAAVAPAAAPTPQPSLPPPPDRPMPTFDE
ERLRELSTVVDLRDTLLGFIKHGRALVEEVAASCTESAEDCTSRTAKAAH
ALKGAAKTIGASRLAHSAEIIELRAKQGESCGSYVPDLSAAYEDLATGVS
QRTWS*
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mRNA from alignment at chr3:778012..778927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02730.1 ID=NO03G02730.1|Name=NO03G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=916bp|location=Sequence derived from alignment at chr3:778012..778927- (Nannochloropsis oceanica)
ACTTGAAGATGACGAAAGAAGACTGAGCAGCGAAAAAACAACACTCCCTC TCACAGATGGCCACGCAACAGTCCTCATGTACAAGGCAACCATGAGCAAA TGGGCCTGGGGACATATGCAAACAAGGCATGCAAAGGGAGGGTACAGGTA ACGCGGCAACAAACACACGACAGAAGTTATAATAAGAGGGAACTTCTTGA AGAAACCCCCCGCGGGAGTCTCAGAGAGGAGTCCTCCCCTAAAACAACCT CCCCCGCGCTAAAATGACCTTCCACCCATACAAATACAGGAGTGTGAGGC TGCATGGGAAACTGTCTGGGTGGGGGAGGAGTGGGAGGAGCAGCAGCGTT GACTCATTCTCCTCCTCCAGCCGCGGTCGCGCCCGCCGCCGCTCCTACAC CACAACCATCACTACCGCCGCCTCCAGACCGCCCCATGCCCACCTTTGAC GAGGAACGCTTGCGGGAGCTAAGCACCGTAGTAGACTTGCGAGATACATT GCTCGGATTTATCAAGCATGGTCGGGCGCTCGTGGAGGAGGTGGCCGCGT CTTGCACAGAATCGGCCGAGGACTGCACCAGCAGGACGGCTAAGGCAGCG CATGCCTTGAAAGGCGCCGCCAAGACAATCGGGGCCTCGCGGCTCGCTCA TAGCGCGGAAATTATCGAGTTGAGGGCAAAACAAGGAGAATCATGTGGTT CGTATGTACCAGATTTGAGCGCCGCCTATGAAGACTTGGCCACGGGAGTG TCTCAGCGGACGTGGTCCTGACCCATGAGTCTTGCAGTGCGAGTTGTAGT GCTATCTTTACGAGCGAAAATGGGAAACTATCACCTGAACCTTTTTCATT CAGCGAAATCAAATCAAAATATGAAATAAGATAAATAATTTGGGCGTGAA AATTAGAACAACCACA
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Coding sequence (CDS) from alignment at chr3:778012..778927-

>NO03G02730.1 ID=NO03G02730.1|Name=NO03G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at chr3:778012..778927- (Nannochloropsis oceanica)
ATGGGAAACTGTCTGGGTGGGGGAGGAGTGGGAGGAGCAGCAGCGTTGAC
TCATTCTCCTCCTCCAGCCGCGGTCGCGCCCGCCGCCGCTCCTACACCAC
AACCATCACTACCGCCGCCTCCAGACCGCCCCATGCCCACCTTTGACGAG
GAACGCTTGCGGGAGCTAAGCACCGTAGTAGACTTGCGAGATACATTGCT
CGGATTTATCAAGCATGGTCGGGCGCTCGTGGAGGAGGTGGCCGCGTCTT
GCACAGAATCGGCCGAGGACTGCACCAGCAGGACGGCTAAGGCAGCGCAT
GCCTTGAAAGGCGCCGCCAAGACAATCGGGGCCTCGCGGCTCGCTCATAG
CGCGGAAATTATCGAGTTGAGGGCAAAACAAGGAGAATCATGTGGTTCGT
ATGTACCAGATTTGAGCGCCGCCTATGAAGACTTGGCCACGGGAGTGTCT
CAGCGGACGTGGTCCTGA
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Synonyms
Publications