NO03G02630, NO03G02630 (gene) Nannochloropsis oceanica

Overview
NameNO03G02630
Unique NameNO03G02630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length297
Alignment locationchr3:753301..753597 -

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Properties
Property NameValue
DescriptionProtein phosphatase 1 regulatory subunit 14d
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:753301..753597 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0042325regulation of phosphorylation
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036658CPI-17_sf
IPR008025PP1_inhibitor
Homology
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BLAST of NO03G02630 vs. NCBI_GenBank
Match: EWM29716.1 (protein phosphatase 1 regulatory subunit 14d [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 5.900e-30
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 0 
Query:    1 MEGMPKKLETKTLTGRYDMKQLIKVQQVEQWFTTQLIDLYKVEDEDALPISFDLLEVIEKPTDKRLAFLKEKLTACPSEAESVIKELLAKLDELNIEL 99
            ME + KKL+ KTLTGRYDMKQLIKVQQVEQWF + L++LYKV+DED LPI+FDLLEVIE   DKR  FL EK+T CPS+ +  IKELLAK+DELNI+L
Sbjct:   48 MENISKKLDNKTLTGRYDMKQLIKVQQVEQWFMSCLVELYKVDDEDKLPINFDLLEVIEMSKDKRPTFLAEKMTECPSDVQPAIKELLAKIDELNIQL 145
The following BLAST results are available for this feature:
BLAST of NO03G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29716.15.900e-3071.43protein phosphatase 1 regulatory subunit 14d [Nann... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005635NSK005635Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02630.1NO03G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667394gene_1454Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100124g17gene932Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02630.1NO03G02630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02630 ID=NO03G02630|Name=NO03G02630|organism=Nannochloropsis oceanica|type=gene|length=297bp
ATGGAGGGCATGCCGAAGAAGCTGGAAACCAAAACCCTGACAGGGCGTTA
TGACATGAAGCAGCTGATCAAGGTGCAACAGGTGGAGCAGTGGTTTACGA
CGCAGCTCATAGACTTGTACAAGGTGGAGGACGAGGATGCGCTGCCAATA
AGCTTCGACTTGTTGGAAGTCATAGAGAAGCCCACTGATAAGCGCCTCGC
CTTCCTCAAGGAAAAATTAACGGCATGCCCTTCGGAGGCCGAGTCTGTCA
TCAAGGAGTTGTTGGCCAAACTCGATGAGCTGAACATTGAGTTGTAG
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protein sequence of NO03G02630.1

>NO03G02630.1-protein ID=NO03G02630.1-protein|Name=NO03G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MEGMPKKLETKTLTGRYDMKQLIKVQQVEQWFTTQLIDLYKVEDEDALPI
SFDLLEVIEKPTDKRLAFLKEKLTACPSEAESVIKELLAKLDELNIEL*
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Synonyms
Publications