NO03G02630.1, NO03G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02630.1
Unique NameNO03G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length297
Alignment locationchr3:753301..753597 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:753301..753597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02630.1 vs.
Match: EWM29716.1 (protein phosphatase 1 regulatory subunit 14d [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 5.900e-30
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 0
Query:    1 MEGMPKKLETKTLTGRYDMKQLIKVQQVEQWFTTQLIDLYKVEDEDALPISFDLLEVIEKPTDKRLAFLKEKLTACPSEAESVIKELLAKLDELNIEL 99
            ME + KKL+ KTLTGRYDMKQLIKVQQVEQWF + L++LYKV+DED LPI+FDLLEVIE   DKR  FL EK+T CPS+ +  IKELLAK+DELNI+L
Sbjct:   48 MENISKKLDNKTLTGRYDMKQLIKVQQVEQWFMSCLVELYKVDDEDKLPINFDLLEVIEMSKDKRPTFLAEKMTECPSDVQPAIKELLAKIDELNIQL 145          
The following BLAST results are available for this feature:
BLAST of NO03G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29716.15.900e-3071.43protein phosphatase 1 regulatory subunit 14d [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02630NO03G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02630.1NO03G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02630.1.cds1NO03G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02630.1 ID=NO03G02630.1|Name=NO03G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=297bp
ATGGAGGGCATGCCGAAGAAGCTGGAAACCAAAACCCTGACAGGGCGTTA
TGACATGAAGCAGCTGATCAAGGTGCAACAGGTGGAGCAGTGGTTTACGA
CGCAGCTCATAGACTTGTACAAGGTGGAGGACGAGGATGCGCTGCCAATA
AGCTTCGACTTGTTGGAAGTCATAGAGAAGCCCACTGATAAGCGCCTCGC
CTTCCTCAAGGAAAAATTAACGGCATGCCCTTCGGAGGCCGAGTCTGTCA
TCAAGGAGTTGTTGGCCAAACTCGATGAGCTGAACATTGAGTTGTAG
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protein sequence of NO03G02630.1

>NO03G02630.1-protein ID=NO03G02630.1-protein|Name=NO03G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MEGMPKKLETKTLTGRYDMKQLIKVQQVEQWFTTQLIDLYKVEDEDALPI
SFDLLEVIEKPTDKRLAFLKEKLTACPSEAESVIKELLAKLDELNIEL*
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mRNA from alignment at chr3:753301..753597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02630.1 ID=NO03G02630.1|Name=NO03G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=297bp|location=Sequence derived from alignment at chr3:753301..753597- (Nannochloropsis oceanica)
ATGGAGGGCATGCCGAAGAAGCTGGAAACCAAAACCCTGACAGGGCGTTA TGACATGAAGCAGCTGATCAAGGTGCAACAGGTGGAGCAGTGGTTTACGA CGCAGCTCATAGACTTGTACAAGGTGGAGGACGAGGATGCGCTGCCAATA AGCTTCGACTTGTTGGAAGTCATAGAGAAGCCCACTGATAAGCGCCTCGC CTTCCTCAAGGAAAAATTAACGGCATGCCCTTCGGAGGCCGAGTCTGTCA TCAAGGAGTTGTTGGCCAAACTCGATGAGCTGAACATTGAGTTGTAG
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Coding sequence (CDS) from alignment at chr3:753301..753597-

>NO03G02630.1 ID=NO03G02630.1|Name=NO03G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at chr3:753301..753597- (Nannochloropsis oceanica)
ATGGAGGGCATGCCGAAGAAGCTGGAAACCAAAACCCTGACAGGGCGTTA
TGACATGAAGCAGCTGATCAAGGTGCAACAGGTGGAGCAGTGGTTTACGA
CGCAGCTCATAGACTTGTACAAGGTGGAGGACGAGGATGCGCTGCCAATA
AGCTTCGACTTGTTGGAAGTCATAGAGAAGCCCACTGATAAGCGCCTCGC
CTTCCTCAAGGAAAAATTAACGGCATGCCCTTCGGAGGCCGAGTCTGTCA
TCAAGGAGTTGTTGGCCAAACTCGATGAGCTGAACATTGAGTTGTAG
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Synonyms
Publications