NO03G02580, NO03G02580 (gene) Nannochloropsis oceanica

Overview
NameNO03G02580
Unique NameNO03G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1634
Alignment locationchr3:743153..744786 -

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Properties
Property NameValue
DescriptionIron-sulfur cluster assembly protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:743153..744786 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0005506iron ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR002871NIF_FeS_clus_asmbl_NifU_N
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Homology
BLAST of NO03G02580 vs. NCBI_GenBank
Match: EWM29688.1 (iron-sulfur cluster assembly enzyme mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 4.300e-68
Identity = 134/161 (83.23%), Postives = 146/161 (90.68%), Query Frame = 0
Query:    1 MLALAMCRNAAASASGMLCRAPQGFTGVATASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGS 162
            ML+ A+  NAAA+ASG + R P+G+TG+A   +RR YHENIVDHYENPRNVGSLDK D NVGTGLVGAPACGDVMKLQIRVD DGKI ESKFKTFGCGSAIASSSVATEWLKGKTV+EC+ IKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLA+KKG+
Sbjct:    1 MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGT 161          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: CBJ33232.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 223.8 bits (569), Expect = 4.200e-55
Identity = 112/146 (76.71%), Postives = 123/146 (84.25%), Query Frame = 0
Query:   26 TGVATASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGSASAGQEQLSA 172
            +G A A  RR+YH+NIV+HYENPRNVGS+DK D  VGTGLVGAPACGDVMKLQI+VD +G I ESKFKTFGCGSAIASSSVATEWLKG++VDE L IKNTDIA HLKLPPVKLHCSMLAEDAIKAA+KDL  K   A   Q  L+A
Sbjct:    4 SGAAVAHQRRSYHDNIVEHYENPRNVGSMDKKDKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGAVAKPAQHALAA 149          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: OQR86904.1 (iron sulfur cluster assembly protein 1, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 223.4 bits (568), Expect = 5.500e-55
Identity = 113/148 (76.35%), Postives = 122/148 (82.43%), Query Frame = 0
Query:   17 MLCRAPQGFTGVATASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGSASA 165
            ML R+      VA  S  R YHENI+DHYENPRNVG+LDK   NVGTGLVGAPACGDVMKLQI VD +G IV+SKFKTFGCGSAIASSSVATEWLKGK +D+CL IKNTDIA+HLKLPPVKLHCSMLAEDAIKAAV D   K+  ASA
Sbjct:    3 MLQRSTARVLSVAKRSNVRMYHENIIDHYENPRNVGALDKKATNVGTGLVGAPACGDVMKLQIEVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKNIDDCLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAVNDYKKKQQMASA 150          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: CCI48707.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 221.9 bits (564), Expect = 1.600e-54
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 0
Query:   26 TGVA-TASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKK 160
            TG+A     +R YHEN++DHYENPRNVGSLDK   +VGTGLVGAPACGDVMKLQI+VD +GKIV+SKFKTFGCGSAIASSSVATEWLKG+TVDEC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+KD   K+
Sbjct:   25 TGIAINTIQQRQYHENVIDHYENPRNVGSLDKAAKDVGTGLVGAPACGDVMKLQIKVDENGKIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAIKDYKKKQ 159          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: CCA20082.1 (iron sulfur cluster assembly protein 1 putative [Albugo laibachii Nc14])

HSP 1 Score: 221.1 bits (562), Expect = 2.700e-54
Identity = 104/126 (82.54%), Postives = 118/126 (93.65%), Query Frame = 0
Query:   34 RRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKK 160
            +R YHEN++DHYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VD +G+IV+SKFKTFGCGSAIASSSVATEWLKG+TVDEC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+ D   K+
Sbjct:   60 QRQYHENVIDHYENPRNVGSLDKADKDVGTGLVGAPACGDVMKLQIKVDENGRIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAINDYKQKQ 185          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: XP_002181136.1 (iron-sulphur assembly protein isc [Phaeodactylum tricornutum CCAP 1055/1] >EEC47059.1 iron-sulphur assembly protein isc [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 221.1 bits (562), Expect = 2.700e-54
Identity = 109/132 (82.58%), Postives = 118/132 (89.39%), Query Frame = 0
Query:   30 TASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGS 162
            TA +RR YHENIV+HYENPRNVGSLDKND +VGTGLVGAPACGDVMKLQI+VD +G I ESKFKTFGCGSAIASSSVATEW+KGKTVD+ L I+N DIAAHLKLPPVKLHCSMLAEDAIKAAV D   K+ S
Sbjct:   23 TALSRRGYHENIVEHYENPRNVGSLDKNDESVGTGLVGAPACGDVMKLQIKVDENGMITESKFKTFGCGSAIASSSVATEWVKGKTVDDILAIQNADIAAHLKLPPVKLHCSMLAEDAIKAAVADWKVKQSS 154          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: CCI49898.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 221.1 bits (562), Expect = 2.700e-54
Identity = 113/150 (75.33%), Postives = 128/150 (85.33%), Query Frame = 0
Query:   11 AASASGMLCRAPQGFTGVA-TASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKK 160
            A SAS  L    +  TG+A     +R YHEN++DHYENPRNVGSLDK   +VGTGLVGAPACGDVMKLQI+VD +GKIV+SKFKTFGCGSAIASSSVATEWLKG+TVDEC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+KD   K+
Sbjct:   14 ALSASSTL----RNSTGIAINTIQQRQYHENVIDHYENPRNVGSLDKAAKDVGTGLVGAPACGDVMKLQIKVDENGKIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAIKDYKKKQ 159          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: OEU20467.1 (FeS cluster assembly scaffold IscU [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 221.1 bits (562), Expect = 2.700e-54
Identity = 116/161 (72.05%), Postives = 132/161 (81.99%), Query Frame = 0
Query:   14 ASGMLCRAPQGF-TGVATASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGSASAGQEQLSAMA 174
            AS ++ R    F + +A +   R+YHENIV+HYENPRNVGSLDKN+++VGTGLVGAPACGDVMKLQI+VD DG I ESKFKTFGCGSAIA+SSVATEW+KGK VDE L IKN+DIAAHLKLPPVKLHCSMLAEDAIKAAVKD   K+       EQLS+ A
Sbjct:    9 ASRVITRRTTVFGSSIANSPFARSYHENIVEHYENPRNVGSLDKNELSVGTGLVGAPACGDVMKLQIKVDDDGNITESKFKTFGCGSAIAASSVATEWVKGKNVDEVLAIKNSDIAAHLKLPPVKLHCSMLAEDAIKAAVKDWKAKQA------EQLSSEA 163          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: XP_012205231.1 (iron-sulfur cluster assembly enzyme ISCU [Saprolegnia parasitica CBS 223.65] >XP_012211389.1 iron-sulfur cluster assembly enzyme ISCU [Saprolegnia parasitica CBS 223.65] >KDO17901.1 iron-sulfur cluster assembly enzyme ISCU [Saprolegnia parasitica CBS 223.65] >KDO24095.1 iron-sulfur cluster assembly enzyme ISCU [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 219.5 bits (558), Expect = 7.900e-54
Identity = 108/137 (78.83%), Postives = 116/137 (84.67%), Query Frame = 0
Query:   28 VATASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGSASA 165
            +  A   R YHENI+DHYENPRNVG+LDK   NVGTGLVGAPACGDVMKLQI VD  G IV+SKFKTFGCGSAIASSSVATEWLKGK +D+CL IKNTDIA+HLKLPPVKLHCSMLAEDAIKAAV D   K+  ASA
Sbjct:   24 LGAAGPVRMYHENIIDHYENPRNVGALDKKSTNVGTGLVGAPACGDVMKLQIEVDEHGTIVDSKFKTFGCGSAIASSSVATEWLKGKNIDDCLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAVNDYKKKQQKASA 160          
BLAST of NO03G02580 vs. NCBI_GenBank
Match: XP_008608595.1 (iron-sulfur cluster assembly enzyme ISCU, mitochondrial [Saprolegnia diclina VS20] >EQC38268.1 iron-sulfur cluster assembly enzyme ISCU, mitochondrial [Saprolegnia diclina VS20])

HSP 1 Score: 218.0 bits (554), Expect = 2.300e-53
Identity = 107/137 (78.10%), Postives = 116/137 (84.67%), Query Frame = 0
Query:   28 VATASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGSASA 165
            +  A   R YHENI+DHYENPRNVG+LDK   NVGTGLVGAPACGDVMKLQI VD  G IV+SKFKTFGCGSAIASSSVATEWLKGK +D+CL IKNTDIA+HLKLPPVKLHCSMLAEDAIKAAV D  +K+   SA
Sbjct:   20 LGAAGPVRMYHENIIDHYENPRNVGALDKKATNVGTGLVGAPACGDVMKLQIEVDEHGTIVDSKFKTFGCGSAIASSSVATEWLKGKNIDDCLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAVNDYKSKQQKVSA 156          
The following BLAST results are available for this feature:
BLAST of NO03G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29688.14.300e-6883.23iron-sulfur cluster assembly enzyme mitochondrial-... [more]
CBJ33232.14.200e-5576.71conserved unknown protein [Ectocarpus siliculosus][more]
OQR86904.15.500e-5576.35iron sulfur cluster assembly protein 1, mitochondr... [more]
CCI48707.11.600e-5480.00unnamed protein product [Albugo candida][more]
CCA20082.12.700e-5482.54iron sulfur cluster assembly protein 1 putative [A... [more]
XP_002181136.12.700e-5482.58iron-sulphur assembly protein isc [Phaeodactylum t... [more]
CCI49898.12.700e-5475.33unnamed protein product [Albugo candida][more]
OEU20467.12.700e-5472.05FeS cluster assembly scaffold IscU [Fragilariopsis... [more]
XP_012205231.17.900e-5478.83iron-sulfur cluster assembly enzyme ISCU [Saproleg... [more]
XP_008608595.12.300e-5378.10iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005641NSK005641Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02580.1NO03G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572110gene_1447Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100114g19gene936Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02580.1NO03G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02580 ID=NO03G02580|Name=NO03G02580|organism=Nannochloropsis oceanica|type=gene|length=1634bp
GGAGAATTATCGCTCGCTCATCAAATAACTCTTGAAGGGGAATTCTCCCC
AATAGATGACCAAGCATCCTAACTCTAACCACAATGACGCCAGACGCAAG
ACCCGCATAATATAACGCATAGGTACTTCCTAGCATCCTTCATCCCCTTC
GGACAGCTTGAGGTGCCTGCGGATCGGTCTTTTGGAGACGGCGGACGACG
GGGCGTCGGGGTCTGCGTCCTTCGTTCGTGAGAGTGCACGTTCTGCCCAA
CAGCCGCGTCGAGCATTTGCCATTTTACTCACCACAGTCACTGCACCACC
GCACACACATCAGCAAAAGACTTCTATCAAGACACCGCAACAGCTCCGCA
TTTCTTGTCACCATGCTCGCTCTGGCAATGTGCAGGAACGCGGCCGCCTC
CGCTAGTGGCATGCTTTGTCGGGCTCCGCAAGGGTTCACCGGCGTGgtaa
gtgctccggagcatgtaatctgtgccatttcttcataccttctatctgaa
gccaccttgtaatctttgctcctctccttcattcacgcctccctcccatt
caccactccctcaacagGCGACGGCCAGCACTCGGCGGGCGTACCATGAG
AACATTGTGGACCACTATGAGAATCCCCGGAACGTGGGCTCTTTGGACAA
GAACGACGTCAATGTGGGAACGgtacgtcattggagtagaggtggacagt
caacataggctttcgtctctcttgcctccctgtcgttttccctctgtccc
aaacttcatgcacaggtgctccgttcctttcccatttttacatttacagG
GCTTAGTGGGCGCCCCCGCCTGTGGTGATGTGATGAAACTTCAGATCCGC
GTGGACGCAGATGGAAAGATCGTGGAGAGCAAGTTCAAGACTTTTGGGTG
TGGCTCGGCGATTGCCTCCAGTTCGGTTGCAACTGAATGGCTCAAGGGGA
AAACCGTGGACGAATGCCTGACGATCAAGAACACTGATATTGCCGCACAC
TTGAAGTTGCCCCCTGTAAAGCTGCATTGTTCCATGTTGGCGGAGGATGC
CATCAAGGCGGCAGTCAAGGATCTGGCGACGAAGAAGGGAAGTGCGAGCG
CTGGCCAGGAGCAGCTGTCCGCGATGGCCTAAATGAAAGAGGTTGGAACG
AGAGAACAAGCGAAGATATGACAACAACAATAAATTCCGAGTGACTCTTT
CCGGCACAACCAATGGCAGAAGTATAAACACACAATCTAGATTTGCTGCT
GCAAGAACTACCCCTTAAAAAAACAAAGTAGGCTACATGAGGAATCATCA
CGGGGTAGAGAGAGACACAGAGCCCAGCAAGAACCAGACGCCCCGGTGCC
TGTTTGGTTTTCCTGTGCGGTTAAGACTTTTTTACGAGACGAGACATTAC
AGCTGCCAGGATGTGGAACGAAAGGCATTCGCACGGTACCGAAGAAAGGA
GGATAATCAAAAAGAGTAGGATGAAAAAAGAAGGAATGCTGTCCTGGAAT
AGGCCAGAAGGACAAGGAAAAGGGAGGAGGGAGAGAGTCAGAAAGGAAAG
GGATGTAAGTAGGCGAGTGAACACGAATACAAAAAGGTATTGTGCGTGCA
AATCGAAGAAAACCCATGAGCGAGAAGTTGAGAA
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protein sequence of NO03G02580.1

>NO03G02580.1-protein ID=NO03G02580.1-protein|Name=NO03G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MLALAMCRNAAASASGMLCRAPQGFTGVATASTRRAYHENIVDHYENPRN
VGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSA
IASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKA
AVKDLATKKGSASAGQEQLSAMA*
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Synonyms
Publications