NO03G02580.1, NO03G02580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02580.1
Unique NameNO03G02580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr3:743153..744786 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:743153..744786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G02580.1 vs.
Match: EWM29688.1 (iron-sulfur cluster assembly enzyme mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 4.300e-68
Identity = 134/161 (83.23%), Postives = 146/161 (90.68%), Query Frame = 0 
Query:    1 MLALAMCRNAAASASGMLCRAPQGFTGVATASTRRAYHENIVDHYENPRNVGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSAIASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLATKKGS 162
            ML+ A+  NAAA+ASG + R P+G+TG+A   +RR YHENIVDHYENPRNVGSLDK D NVGTGLVGAPACGDVMKLQIRVD DGKI ESKFKTFGCGSAIASSSVATEWLKGKTV+EC+ IKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLA+KKG+
Sbjct:    1 MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGT 161
The following BLAST results are available for this feature:
BLAST of NO03G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29688.14.300e-6883.23iron-sulfur cluster assembly enzyme mitochondrial-... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02580NO03G02580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02580.1NO03G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02580.1.cds1NO03G02580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02580.1.cds2NO03G02580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02580.1.cds3NO03G02580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02580.1 ID=NO03G02580.1|Name=NO03G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
GGAGAATTATCGCTCGCTCATCAAATAACTCTTGAAGGGGAATTCTCCCC
AATAGATGACCAAGCATCCTAACTCTAACCACAATGACGCCAGACGCAAG
ACCCGCATAATATAACGCATAGGTACTTCCTAGCATCCTTCATCCCCTTC
GGACAGCTTGAGGTGCCTGCGGATCGGTCTTTTGGAGACGGCGGACGACG
GGGCGTCGGGGTCTGCGTCCTTCGTTCGTGAGAGTGCACGTTCTGCCCAA
CAGCCGCGTCGAGCATTTGCCATTTTACTCACCACAGTCACTGCACCACC
GCACACACATCAGCAAAAGACTTCTATCAAGACACCGCAACAGCTCCGCA
TTTCTTGTCACCATGCTCGCTCTGGCAATGTGCAGGAACGCGGCCGCCTC
CGCTAGTGGCATGCTTTGTCGGGCTCCGCAAGGGTTCACCGGCGTGGCGA
CGGCCAGCACTCGGCGGGCGTACCATGAGAACATTGTGGACCACTATGAG
AATCCCCGGAACGTGGGCTCTTTGGACAAGAACGACGTCAATGTGGGAAC
GGGCTTAGTGGGCGCCCCCGCCTGTGGTGATGTGATGAAACTTCAGATCC
GCGTGGACGCAGATGGAAAGATCGTGGAGAGCAAGTTCAAGACTTTTGGG
TGTGGCTCGGCGATTGCCTCCAGTTCGGTTGCAACTGAATGGCTCAAGGG
GAAAACCGTGGACGAATGCCTGACGATCAAGAACACTGATATTGCCGCAC
ACTTGAAGTTGCCCCCTGTAAAGCTGCATTGTTCCATGTTGGCGGAGGAT
GCCATCAAGGCGGCAGTCAAGGATCTGGCGACGAAGAAGGGAAGTGCGAG
CGCTGGCCAGGAGCAGCTGTCCGCGATGGCCTAAATGAAAGAGGTTGGAA
CGAGAGAACAAGCGAAGATATGACAACAACAATAAATTCCGAGTGACTCT
TTCCGGCACAACCAATGGCAGAAGTATAAACACACAATCTAGATTTGCTG
CTGCAAGAACTACCCCTTAAAAAAACAAAGTAGGCTACATGAGGAATCAT
CACGGGGTAGAGAGAGACACAGAGCCCAGCAAGAACCAGACGCCCCGGTG
CCTGTTTGGTTTTCCTGTGCGGTTAAGACTTTTTTACGAGACGAGACATT
ACAGCTGCCAGGATGTGGAACGAAAGGCATTCGCACGGTACCGAAGAAAG
GAGGATAATCAAAAAGAGTAGGATGAAAAAAGAAGGAATGCTGTCCTGGA
ATAGGCCAGAAGGACAAGGAAAAGGGAGGAGGGAGAGAGTCAGAAAGGAA
AGGGATGTAAGTAGGCGAGTGAACACGAATACAAAAAGGTATTGTGCGTG
CAAATCGAAGAAAACCCATGAGCGAGAAGTTGAGAA
back to top

protein sequence of NO03G02580.1

>NO03G02580.1-protein ID=NO03G02580.1-protein|Name=NO03G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MLALAMCRNAAASASGMLCRAPQGFTGVATASTRRAYHENIVDHYENPRN
VGSLDKNDVNVGTGLVGAPACGDVMKLQIRVDADGKIVESKFKTFGCGSA
IASSSVATEWLKGKTVDECLTIKNTDIAAHLKLPPVKLHCSMLAEDAIKA
AVKDLATKKGSASAGQEQLSAMA*
back to top

mRNA from alignment at chr3:743153..744786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02580.1 ID=NO03G02580.1|Name=NO03G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp|location=Sequence derived from alignment at chr3:743153..744786- (Nannochloropsis oceanica)
GGAGAATTATCGCTCGCTCATCAAATAACTCTTGAAGGGGAATTCTCCCC
AATAGATGACCAAGCATCCTAACTCTAACCACAATGACGCCAGACGCAAG
ACCCGCATAATATAACGCATAGGTACTTCCTAGCATCCTTCATCCCCTTC
GGACAGCTTGAGGTGCCTGCGGATCGGTCTTTTGGAGACGGCGGACGACG
GGGCGTCGGGGTCTGCGTCCTTCGTTCGTGAGAGTGCACGTTCTGCCCAA
CAGCCGCGTCGAGCATTTGCCATTTTACTCACCACAGTCACTGCACCACC
GCACACACATCAGCAAAAGACTTCTATCAAGACACCGCAACAGCTCCGCA
TTTCTTGTCACCATGCTCGCTCTGGCAATGTGCAGGAACGCGGCCGCCTC
CGCTAGTGGCATGCTTTGTCGGGCTCCGCAAGGGTTCACCGGCGTGGTAA
GTGCTCCGGAGCATGTAATCTGTGCCATTTCTTCATACCTTCTATCTGAA
GCCACCTTGTAATCTTTGCTCCTCTCCTTCATTCACGCCTCCCTCCCATT
CACCACTCCCTCAACAGGCGACGGCCAGCACTCGGCGGGCGTACCATGAG
AACATTGTGGACCACTATGAGAATCCCCGGAACGTGGGCTCTTTGGACAA
GAACGACGTCAATGTGGGAACGGTACGTCATTGGAGTAGAGGTGGACAGT
CAACATAGGCTTTCGTCTCTCTTGCCTCCCTGTCGTTTTCCCTCTGTCCC
AAACTTCATGCACAGGTGCTCCGTTCCTTTCCCATTTTTACATTTACAGG
GCTTAGTGGGCGCCCCCGCCTGTGGTGATGTGATGAAACTTCAGATCCGC
GTGGACGCAGATGGAAAGATCGTGGAGAGCAAGTTCAAGACTTTTGGGTG
TGGCTCGGCGATTGCCTCCAGTTCGGTTGCAACTGAATGGCTCAAGGGGA
AAACCGTGGACGAATGCCTGACGATCAAGAACACTGATATTGCCGCACAC
TTGAAGTTGCCCCCTGTAAAGCTGCATTGTTCCATGTTGGCGGAGGATGC
CATCAAGGCGGCAGTCAAGGATCTGGCGACGAAGAAGGGAAGTGCGAGCG
CTGGCCAGGAGCAGCTGTCCGCGATGGCCTAAATGAAAGAGGTTGGAACG
AGAGAACAAGCGAAGATATGACAACAACAATAAATTCCGAGTGACTCTTT
CCGGCACAACCAATGGCAGAAGTATAAACACACAATCTAGATTTGCTGCT
GCAAGAACTACCCCTTAAAAAAACAAAGTAGGCTACATGAGGAATCATCA
CGGGGTAGAGAGAGACACAGAGCCCAGCAAGAACCAGACGCCCCGGTGCC
TGTTTGGTTTTCCTGTGCGGTTAAGACTTTTTTACGAGACGAGACATTAC
AGCTGCCAGGATGTGGAACGAAAGGCATTCGCACGGTACCGAAGAAAGGA
GGATAATCAAAAAGAGTAGGATGAAAAAAGAAGGAATGCTGTCCTGGAAT
AGGCCAGAAGGACAAGGAAAAGGGAGGAGGGAGAGAGTCAGAAAGGAAAG
GGATGTAAGTAGGCGAGTGAACACGAATACAAAAAGGTATTGTGCGTGCA
AATCGAAGAAAACCCATGAGCGAGAAGTTGAGAA
back to top

Coding sequence (CDS) from alignment at chr3:743153..744786-

>NO03G02580.1 ID=NO03G02580.1|Name=NO03G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at chr3:743153..744786- (Nannochloropsis oceanica)
ATGCTCGCTCTGGCAATGTGCAGGAACGCGGCCGCCTCCGCTAGTGGCAT
GCTTTGTCGGGCTCCGCAAGGGTTCACCGGCGTGGCGACGGCCAGCACTC
GGCGGGCGTACCATGAGAACATTGTGGACCACTATGAGAATCCCCGGAAC
GTGGGCTCTTTGGACAAGAACGACGTCAATGTGGGAACGGGCTTAGTGGG
CGCCCCCGCCTGTGGTGATGTGATGAAACTTCAGATCCGCGTGGACGCAG
ATGGAAAGATCGTGGAGAGCAAGTTCAAGACTTTTGGGTGTGGCTCGGCG
ATTGCCTCCAGTTCGGTTGCAACTGAATGGCTCAAGGGGAAAACCGTGGA
CGAATGCCTGACGATCAAGAACACTGATATTGCCGCACACTTGAAGTTGC
CCCCTGTAAAGCTGCATTGTTCCATGTTGGCGGAGGATGCCATCAAGGCG
GCAGTCAAGGATCTGGCGACGAAGAAGGGAAGTGCGAGCGCTGGCCAGGA
GCAGCTGTCCGCGATGGCCTAA
back to top
Synonyms
Publications