NO03G02470, NO03G02470 (gene) Nannochloropsis oceanica

Overview
NameNO03G02470
Unique NameNO03G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr3:710259..711110 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:710259..711110 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0097196Shu complex
GO:0097196Shu complex
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0003697single-stranded DNA binding
GO:0016887ATPase activity
GO:0003697single-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000725recombinational repair
GO:0000725recombinational repair
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR033586SWSAP1
Homology
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BLAST of NO03G02470 vs. NCBI_GenBank
Match: EWM29689.1 (hypothetical protein Naga_100114g10 [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 7.000e-68
Identity = 143/267 (53.56%), Postives = 176/267 (65.92%), Query Frame = 0 
Query:   23 QPHQ-DHDALLHPFLRAHGVDGVCLVGPRQSGKSSLGFDVCYKMAQSQPDRQMLFIHRHEDARLVAKTVRFVVLPPPFSSSPSAMQHPKRDPPVP-------GWDFSVLENVFLKRFTTVQQLCWYFGSLHQQPDHLLPSVIVVDDLDKFRSTTPRGDNPLRAPCKVLSVMRDAAMHIKRRTGRACVLVVTMEFADRGLMAPLTRQLGIVLRVVRQQQQQGERTGEWAWSLQEDKECLQLLGKSSYSVRDTYCFTF---EGGLIQVL 279
            +PHQ  H A++  FLRA G +G CL+GP++ GKSSL F +CY MAQ  P+RQ +FIHRH D+R V KT R VV     SSSP+   H + +   P       GWDFSVL+NVFLKRFT+ Q LCWYFGSLH QPD LLPSVIVVDDLD++ STT R D+ L A C+VLSV+RDAA HI++RTG  C LVVTME A RGL+ PL RQLG+VLR+   Q  +G  +    W L+EDKE               YC  +   E G+++VL
Sbjct:   18 EPHQGQHVAVVLRFLRARGTEGACLLGPQECGKSSLAFQLCYTMAQQDPNRQAIFIHRHRDSRHVVKTTRLVVASSRPSSSPAVEPHHQSEQTGPSCVGRAKGWDFSVLDNVFLKRFTSFQGLCWYFGSLHNQPDALLPSVIVVDDLDRYISTTNRDDDSLSAYCQVLSVIRDAAEHIRQRTGHHCSLVVTMEQASRGLLLPLIRQLGMVLRISGDQNHKGGESMA-IWKLEEDKESRNGDTVGGEGAVSCYCCRYDATEKGVLRVL 283
The following BLAST results are available for this feature:
BLAST of NO03G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29689.17.000e-6853.56hypothetical protein Naga_100114g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005652NSK005652Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02470.1NO03G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572077gene_1434Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100114g10gene945Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02470.1NO03G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02470 ID=NO03G02470|Name=NO03G02470|organism=Nannochloropsis oceanica|type=gene|length=852bp
ATGGTGCCGCCTTTTCTCTTCCACGGCGAAGGATCAATGCCACCATCTCT
ACAGCCCGCACTTTCACAACCGCATCAGGACCATGACGCCCTTCTTCATC
CTTTCCTACGAGCGCATGGCGTCGACGGGGTCTGCCTCGTGGGGCCCCGG
CAGAGCGGTAAGAGCAGTTTGGGCTTTGACGTGTGCTACAAGATGGCTCA
ATCCCAGCCAGATAGGCAAATGCTCTTCATCCACCGGCATGAGGATGCCC
GGCTGGTGGCCAAGACGGTCCGTTTCGTCGTCCTCCCTCCTCCCTTCTCC
TCCTCCCCCTCGGCCATGCAGCACCCCAAACGCGATCCCCCCGTTCCCGG
TTGGGATTTTTCCGTCCTCGAAAATGTCTTCCTCAAGCGTTTTACAACTG
TGCAACAACTTTGCTGGTATTTTGGGAGCCTCCACCAACAGCCCGACCAC
TTACTCCCCTCCGTCATCGTCGTGGACGATCTCGACAAGTTCCGTAGCAC
CACCCCTCGTGGCGACAACCCCTTGCGAGCCCCTTGTAAGGTGTTGAGCG
TGATGCGGGACGCAGCTATGCACATTAAACGCCGTACAGGCCGGGCATGT
GTGTTGGTGGTGACAATGGAGTTTGCTGACCGAGGGTTGATGGCGCCCTT
GACGAGGCAGCTAGGGATCGTCTTGAGGGTTGTCAGACAGCAGCAGCAGC
AGGGGGAAAGAACAGGAGAATGGGCATGGTCACTGCAGGAGGATAAGGAG
TGTCTACAGTTATTGGGAAAGTCGTCTTATTCAGTGAGGGATACATATTG
TTTTACTTTCGAAGGAGGATTGATCCAGGTGCTTGGGGAGGATCAGAAAT
GA
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protein sequence of NO03G02470.1

>NO03G02470.1-protein ID=NO03G02470.1-protein|Name=NO03G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MVPPFLFHGEGSMPPSLQPALSQPHQDHDALLHPFLRAHGVDGVCLVGPR
QSGKSSLGFDVCYKMAQSQPDRQMLFIHRHEDARLVAKTVRFVVLPPPFS
SSPSAMQHPKRDPPVPGWDFSVLENVFLKRFTTVQQLCWYFGSLHQQPDH
LLPSVIVVDDLDKFRSTTPRGDNPLRAPCKVLSVMRDAAMHIKRRTGRAC
VLVVTMEFADRGLMAPLTRQLGIVLRVVRQQQQQGERTGEWAWSLQEDKE
CLQLLGKSSYSVRDTYCFTFEGGLIQVLGEDQK*
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Synonyms
Publications