NO03G02470.1, NO03G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02470.1
Unique NameNO03G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr3:710259..711110 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:710259..711110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02470.1 vs.
Match: EWM29689.1 (hypothetical protein Naga_100114g10 [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 7.000e-68
Identity = 143/267 (53.56%), Postives = 176/267 (65.92%), Query Frame = 0
Query:   23 QPHQ-DHDALLHPFLRAHGVDGVCLVGPRQSGKSSLGFDVCYKMAQSQPDRQMLFIHRHEDARLVAKTVRFVVLPPPFSSSPSAMQHPKRDPPVP-------GWDFSVLENVFLKRFTTVQQLCWYFGSLHQQPDHLLPSVIVVDDLDKFRSTTPRGDNPLRAPCKVLSVMRDAAMHIKRRTGRACVLVVTMEFADRGLMAPLTRQLGIVLRVVRQQQQQGERTGEWAWSLQEDKECLQLLGKSSYSVRDTYCFTF---EGGLIQVL 279
            +PHQ  H A++  FLRA G +G CL+GP++ GKSSL F +CY MAQ  P+RQ +FIHRH D+R V KT R VV     SSSP+   H + +   P       GWDFSVL+NVFLKRFT+ Q LCWYFGSLH QPD LLPSVIVVDDLD++ STT R D+ L A C+VLSV+RDAA HI++RTG  C LVVTME A RGL+ PL RQLG+VLR+   Q  +G  +    W L+EDKE               YC  +   E G+++VL
Sbjct:   18 EPHQGQHVAVVLRFLRARGTEGACLLGPQECGKSSLAFQLCYTMAQQDPNRQAIFIHRHRDSRHVVKTTRLVVASSRPSSSPAVEPHHQSEQTGPSCVGRAKGWDFSVLDNVFLKRFTSFQGLCWYFGSLHNQPDALLPSVIVVDDLDRYISTTNRDDDSLSAYCQVLSVIRDAAEHIRQRTGHHCSLVVTMEQASRGLLLPLIRQLGMVLRISGDQNHKGGESMA-IWKLEEDKESRNGDTVGGEGAVSCYCCRYDATEKGVLRVL 283          
The following BLAST results are available for this feature:
BLAST of NO03G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29689.17.000e-6853.56hypothetical protein Naga_100114g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02470NO03G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02470.1NO03G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02470.1.cds1NO03G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02470.1 ID=NO03G02470.1|Name=NO03G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
ATGGTGCCGCCTTTTCTCTTCCACGGCGAAGGATCAATGCCACCATCTCT
ACAGCCCGCACTTTCACAACCGCATCAGGACCATGACGCCCTTCTTCATC
CTTTCCTACGAGCGCATGGCGTCGACGGGGTCTGCCTCGTGGGGCCCCGG
CAGAGCGGTAAGAGCAGTTTGGGCTTTGACGTGTGCTACAAGATGGCTCA
ATCCCAGCCAGATAGGCAAATGCTCTTCATCCACCGGCATGAGGATGCCC
GGCTGGTGGCCAAGACGGTCCGTTTCGTCGTCCTCCCTCCTCCCTTCTCC
TCCTCCCCCTCGGCCATGCAGCACCCCAAACGCGATCCCCCCGTTCCCGG
TTGGGATTTTTCCGTCCTCGAAAATGTCTTCCTCAAGCGTTTTACAACTG
TGCAACAACTTTGCTGGTATTTTGGGAGCCTCCACCAACAGCCCGACCAC
TTACTCCCCTCCGTCATCGTCGTGGACGATCTCGACAAGTTCCGTAGCAC
CACCCCTCGTGGCGACAACCCCTTGCGAGCCCCTTGTAAGGTGTTGAGCG
TGATGCGGGACGCAGCTATGCACATTAAACGCCGTACAGGCCGGGCATGT
GTGTTGGTGGTGACAATGGAGTTTGCTGACCGAGGGTTGATGGCGCCCTT
GACGAGGCAGCTAGGGATCGTCTTGAGGGTTGTCAGACAGCAGCAGCAGC
AGGGGGAAAGAACAGGAGAATGGGCATGGTCACTGCAGGAGGATAAGGAG
TGTCTACAGTTATTGGGAAAGTCGTCTTATTCAGTGAGGGATACATATTG
TTTTACTTTCGAAGGAGGATTGATCCAGGTGCTTGGGGAGGATCAGAAAT
GA
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protein sequence of NO03G02470.1

>NO03G02470.1-protein ID=NO03G02470.1-protein|Name=NO03G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MVPPFLFHGEGSMPPSLQPALSQPHQDHDALLHPFLRAHGVDGVCLVGPR
QSGKSSLGFDVCYKMAQSQPDRQMLFIHRHEDARLVAKTVRFVVLPPPFS
SSPSAMQHPKRDPPVPGWDFSVLENVFLKRFTTVQQLCWYFGSLHQQPDH
LLPSVIVVDDLDKFRSTTPRGDNPLRAPCKVLSVMRDAAMHIKRRTGRAC
VLVVTMEFADRGLMAPLTRQLGIVLRVVRQQQQQGERTGEWAWSLQEDKE
CLQLLGKSSYSVRDTYCFTFEGGLIQVLGEDQK*
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mRNA from alignment at chr3:710259..711110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02470.1 ID=NO03G02470.1|Name=NO03G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at chr3:710259..711110+ (Nannochloropsis oceanica)
ATGGTGCCGCCTTTTCTCTTCCACGGCGAAGGATCAATGCCACCATCTCT ACAGCCCGCACTTTCACAACCGCATCAGGACCATGACGCCCTTCTTCATC CTTTCCTACGAGCGCATGGCGTCGACGGGGTCTGCCTCGTGGGGCCCCGG CAGAGCGGTAAGAGCAGTTTGGGCTTTGACGTGTGCTACAAGATGGCTCA ATCCCAGCCAGATAGGCAAATGCTCTTCATCCACCGGCATGAGGATGCCC GGCTGGTGGCCAAGACGGTCCGTTTCGTCGTCCTCCCTCCTCCCTTCTCC TCCTCCCCCTCGGCCATGCAGCACCCCAAACGCGATCCCCCCGTTCCCGG TTGGGATTTTTCCGTCCTCGAAAATGTCTTCCTCAAGCGTTTTACAACTG TGCAACAACTTTGCTGGTATTTTGGGAGCCTCCACCAACAGCCCGACCAC TTACTCCCCTCCGTCATCGTCGTGGACGATCTCGACAAGTTCCGTAGCAC CACCCCTCGTGGCGACAACCCCTTGCGAGCCCCTTGTAAGGTGTTGAGCG TGATGCGGGACGCAGCTATGCACATTAAACGCCGTACAGGCCGGGCATGT GTGTTGGTGGTGACAATGGAGTTTGCTGACCGAGGGTTGATGGCGCCCTT GACGAGGCAGCTAGGGATCGTCTTGAGGGTTGTCAGACAGCAGCAGCAGC AGGGGGAAAGAACAGGAGAATGGGCATGGTCACTGCAGGAGGATAAGGAG TGTCTACAGTTATTGGGAAAGTCGTCTTATTCAGTGAGGGATACATATTG TTTTACTTTCGAAGGAGGATTGATCCAGGTGCTTGGGGAGGATCAGAAAT GA
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Coding sequence (CDS) from alignment at chr3:710259..711110+

>NO03G02470.1 ID=NO03G02470.1|Name=NO03G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr3:710259..711110+ (Nannochloropsis oceanica)
ATGGTGCCGCCTTTTCTCTTCCACGGCGAAGGATCAATGCCACCATCTCT
ACAGCCCGCACTTTCACAACCGCATCAGGACCATGACGCCCTTCTTCATC
CTTTCCTACGAGCGCATGGCGTCGACGGGGTCTGCCTCGTGGGGCCCCGG
CAGAGCGGTAAGAGCAGTTTGGGCTTTGACGTGTGCTACAAGATGGCTCA
ATCCCAGCCAGATAGGCAAATGCTCTTCATCCACCGGCATGAGGATGCCC
GGCTGGTGGCCAAGACGGTCCGTTTCGTCGTCCTCCCTCCTCCCTTCTCC
TCCTCCCCCTCGGCCATGCAGCACCCCAAACGCGATCCCCCCGTTCCCGG
TTGGGATTTTTCCGTCCTCGAAAATGTCTTCCTCAAGCGTTTTACAACTG
TGCAACAACTTTGCTGGTATTTTGGGAGCCTCCACCAACAGCCCGACCAC
TTACTCCCCTCCGTCATCGTCGTGGACGATCTCGACAAGTTCCGTAGCAC
CACCCCTCGTGGCGACAACCCCTTGCGAGCCCCTTGTAAGGTGTTGAGCG
TGATGCGGGACGCAGCTATGCACATTAAACGCCGTACAGGCCGGGCATGT
GTGTTGGTGGTGACAATGGAGTTTGCTGACCGAGGGTTGATGGCGCCCTT
GACGAGGCAGCTAGGGATCGTCTTGAGGGTTGTCAGACAGCAGCAGCAGC
AGGGGGAAAGAACAGGAGAATGGGCATGGTCACTGCAGGAGGATAAGGAG
TGTCTACAGTTATTGGGAAAGTCGTCTTATTCAGTGAGGGATACATATTG
TTTTACTTTCGAAGGAGGATTGATCCAGGTGCTTGGGGAGGATCAGAAAT
GA
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Synonyms
Publications