NO03G02310, NO03G02310 (gene) Nannochloropsis oceanica

Overview
NameNO03G02310
Unique NameNO03G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1099
Alignment locationchr3:672576..673674 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:672576..673674 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025067DUF4079
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_005838494.1 (hypothetical protein GUITHDRAFT_85017 [Guillardia theta CCMP2712] >EKX51514.1 hypothetical protein GUITHDRAFT_85017 [Guillardia theta CCMP2712])

HSP 1 Score: 160.2 bits (404), Expect = 6.900e-36
Identity = 84/178 (47.19%), Postives = 111/178 (62.36%), Query Frame = 0
Query:   41 AVQMNGVTDAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIR---NGEGEIEF---TGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            A    G+ DA+T+Y+ ++ P  + +    N+P  ++ WFH  NMG+VL +M ++G  LGW+IR      GE+      GKT  ELH TLMG   L FFLG  GGLVL  VQ+ PI+ STH  + ++G ALLA QA L  LF G + +TARTAHA+LGSATM +   HA  GLQLG  +
Sbjct:   65 AAYPQGLVDAVTAYMNLYVPLFKGL----NLPPFMLHWFHALNMGVVLASMGTYGTILGWQIRQNPKSAGELAVGPNLGKTTSELHSTLMGAMGLIFFLGANGGLVLSLVQDKPIMQSTHFTSAMVGFALLAAQASLTTLFKGGNAKTARTAHAFLGSATMGVFLFHAYQGLQLGLEY 238          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_002294460.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88294.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 156.0 bits (393), Expect = 1.300e-34
Identity = 83/172 (48.26%), Postives = 105/172 (61.05%), Query Frame = 0
Query:   45 NGVTDAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEGEIEFT----GKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            +G+ + + SYV IW+P  +       +P  L+ W HGA M  VL ++   GAY+GW+IR G GE E T    G T RE HP ++G AF       QGGLVLLD Q   IL S HA+T  + +ALLA QA+LPKLF   +G+ AR  HAYLG+ATM +LF H   GL LG SF
Sbjct:    5 DGIKEPVQSYVDIWTPLFKQASESGLLPDFLLHWGHGAAMATVLLSLGVVGAYMGWQIRFGNGE-EVTPLTLGDTIREAHPKIIGGAFXXXXXXXQGGLVLLDTQGQSILESPHAMTAALSVALLATQAVLPKLFATENGKLARDVHAYLGTATMTVLFAHLVTGLNLGLSF 175          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: KOO29814.1 (hypothetical protein Ctob_005419 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 156.0 bits (393), Expect = 1.300e-34
Identity = 83/177 (46.89%), Postives = 105/177 (59.32%), Query Frame = 0
Query:   39 AGAVQMNGVTDAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEGEIEFT---GKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            A  + ++ +  A++SYV IW P   +  A    P  L+ W HGA M  VL  M  FGA+LGW+IR G+GE  ++   G+T RELHP LMG    FF LGGQGGLVLL     PIL S H+ T +IG++LL  QA +         E  RT HAYLG+ T+  L +HA FGL LG SF
Sbjct:    3 AAFLALDAIEPAVSSYVNIWVPLFESAKASGLAPDFLLHWGHGAAMATVLFAMGGFGAFLGWQIRFGKGEEVYSLTLGETVRELHPKLMGAMLFFFLLGGQGGLVLLATGGQPILQSAHSSTAVIGLSLLLAQAAIGVTM--KDSELGRTVHAYLGTGTLLALVVHAYFGLNLGQSF 177          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_002181743.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46957.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 155.6 bits (392), Expect = 1.700e-34
Identity = 80/170 (47.06%), Postives = 107/170 (62.94%), Query Frame = 0
Query:   46 GVTDAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEG-EIE--FTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            GV + + +YV IW+P           P  L+ W HG  M  VL +M   GA++GW+IR G G E+     G+T RE HP ++G A  FF LGGQGGLVLL  Q  PIL S HAV+ ++ ++L+  QA+LP+LF+   G+ AR AHAYLG+AT+A LF+H   G+ LG SF
Sbjct:   59 GVNEPVQNYVNIWTPLFEQAKQAGIAPEVLLHWGHGGAMASVLLSMGLIGAWMGWQIRLGNGNEVNALTLGETMREAHPKIIGGALFFFLLGGQGGLVLLASQGQPILESPHAVSAVVVLSLMGIQAILPQLFE-TGGQLARNAHAYLGTATIAALFVHLATGVNLGLSF 227          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: GAX12234.1 (hypothetical protein FisN_1Hu163 [Fistulifera solaris])

HSP 1 Score: 150.6 bits (379), Expect = 5.500e-33
Identity = 93/208 (44.71%), Postives = 117/208 (56.25%), Query Frame = 0
Query:    8 VLTLLLCFQSVVSFLLPTPIVVRSATAPARGAGAVQMNGVTDAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEGE---IEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            +L LL  F +V +F++PT   VR    P+        +G+ + + +YV IW+P  +        P  L+ W HGA MG VL TM   GA++GW+IR G GE       G+T RE HP ++G A        QGGLVLLD Q   IL S HA++  + I LLA QA+LPK F   S   AR AHAYLGSATM  L  HA  GLQLG SF
Sbjct:    6 LLALLSTFLTVNAFVVPT-AYVRRQQKPSPLVMQSAFDGIKEPVQNYVNIWTPMFQQARDAGLAPDFLLHWGHGAAMGTVLLTMGMIGAWMGWQIRLGNGEQVNALTLGETIREQHPKIIGGAXXXXXXXXQGGLVLLDTQGQSILESPHALSAAVAIGLLAVQAILPKFF--ASTPVARDAHAYLGSATMVALVAHAVTGLQLGLSF 210          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_009035740.1 (hypothetical protein AURANDRAFT_63268 [Aureococcus anophagefferens] >EGB09696.1 hypothetical protein AURANDRAFT_63268 [Aureococcus anophagefferens])

HSP 1 Score: 142.5 bits (358), Expect = 1.500e-30
Identity = 82/192 (42.71%), Postives = 106/192 (55.21%), Query Frame = 0
Query:   25 TPIVVRSATAPARGAGAVQMNGVTDAITSYVGIWSPTI-RTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEG---EIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            TP +V     PA          + + +  Y   W+  + R  +    +P  L+ W HG  MG VL +M   G+++GW+IR G G        G+T R+ HP +MG A  FF LGGQGGLVL  VQ + +L STHA TGL  + LLA +A LP  F+   G+  R AHAYLGSA M LLF H   G+QLG SF
Sbjct:   31 TPQLVEQQALPAT---------IVEPLAGYAEFWNGLLFRPAIEAGLVPEFLLHWGHGLAMGTVLCSMGVIGSWMGWQIRGGNGGESNALTLGETIRDTHPKIMGGALFFFALGGQGGLVLNAVQGNAVLGSTHASTGLEALGLLAVEAALPLAFE--KGKPLRDAHAYLGSAIMVLLFAHMAAGIQLGMSF 211          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_002949267.1 (hypothetical protein VOLCADRAFT_89542 [Volvox carteri f. nagariensis] >EFJ49760.1 hypothetical protein VOLCADRAFT_89542 [Volvox carteri f. nagariensis])

HSP 1 Score: 141.0 bits (354), Expect = 4.400e-30
Identity = 81/166 (48.80%), Postives = 100/166 (60.24%), Query Frame = 0
Query:   49 DAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFG-AYLGWKIRNG-EGEIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            DAI  Y+   +    T+    NIP A++ W H  NM +VL  M  +G AYLGW+IR   +GE+      A+E HP L    F FF LG  GG++ L +Q  PI  S H  TGL+G+ LL FQ+LLP  F   +GE ARTAHAYLGSA MAL  +HA  GLQLG SF
Sbjct:   55 DAIYQYLKPQAEYFNTL----NIPEAIVHWGHPGNMAVVLFAMGGYGAAYLGWQIRTSTDGEVV---ARAKEAHPKLAAGMFFFFTLGALGGMLSLLMQGKPIFESPHVWTGLVGLGLLGFQSLLPLAFASGTGE-ARTAHAYLGSAIMALFLVHAALGLQLGLSF 212          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_012846337.1 (PREDICTED: uncharacterized protein LOC105966321 [Erythranthe guttata] >EYU29878.1 hypothetical protein MIMGU_mgv1a012544mg [Erythranthe guttata])

HSP 1 Score: 139.4 bits (350), Expect = 1.300e-29
Identity = 76/161 (47.20%), Postives = 99/161 (61.49%), Query Frame = 0
Query:   52 TSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEGEIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            T+   ++SP +  IV   N+P  L+ W H  NM +VL  M  +G YLG++IR  + ++E   K A++LHP L+   F FF LG  GG+  L   + PIL S HAVTGLIG+ALL  Q +LP LF+GNSG   R  HA LGS  M L  +HA  GLQLG S+
Sbjct:   92 TTVTSLFSPFVE-IVKSFNLPGWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRFSD-DVEEKAK-AKDLHPKLLAGMFFFFALGATGGVTSLLTSDKPILESPHAVTGLIGLALLTLQTVLPTLFEGNSG--LRNVHAILGSGIMTLFLVHAALGLQLGLSY 247          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_020094236.1 (uncharacterized protein LOC109714175 isoform X1 [Ananas comosus])

HSP 1 Score: 137.5 bits (345), Expect = 4.800e-29
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 0
Query:   49 DAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEGEIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            +A+ S  G ++  ++T     N+P  L+ W H ANM +VL  M  +G YLG++IR  + ++E   K A++LHP L+G  F FF LG  GG+  L   + PI  S HAVTG IG+ALL  Q++LP LF+GN G   R AH  LGS+ M L  +HA  GLQLG SF
Sbjct:   92 EAVKSIFGPFAELVKT----WNLPDWLVHWGHPANMAVVLFAMGGYGTYLGFRIRFSD-DVEEKAK-AKDLHPKLLGGMFFFFALGATGGITALLTSDKPIFESPHAVTGFIGLALLTVQSILPALFEGNPG--LRMAHGLLGSSIMTLFLVHAALGLQLGLSF 247          
BLAST of NO03G02310 vs. NCBI_GenBank
Match: XP_010684032.1 (PREDICTED: uncharacterized protein LOC104898637 [Beta vulgaris subsp. vulgaris] >KMT06213.1 hypothetical protein BVRB_7g161430 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 137.1 bits (344), Expect = 6.300e-29
Identity = 73/164 (44.51%), Postives = 97/164 (59.15%), Query Frame = 0
Query:   49 DAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEGEIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            + + S  G ++  ++T     N+P  L+ W H  NM +VL  M  +G YLG++IR  + E E     A++LHP L+G  F FF LG  GG++ L   + PIL S HAVTGLIG+ALL  Q +LP LF+GN G   R  H  LGS  M L  +HA  GLQLG S+
Sbjct:  116 ETVRSVFGPFAELVKTF----NLPGWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRFSDDEEE--KAKAKDLHPKLLGGMFFFFGLGATGGIISLLTSDRPILESPHAVTGLIGLALLTLQTVLPSLFEGNPG--LRNVHGILGSGIMTLFVVHAALGLQLGLSY 271          
The following BLAST results are available for this feature:
BLAST of NO03G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005838494.16.900e-3647.19hypothetical protein GUITHDRAFT_85017 [Guillardia ... [more]
XP_002294460.11.300e-3448.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
KOO29814.11.300e-3446.89hypothetical protein Ctob_005419 [Chrysochromulina... [more]
XP_002181743.11.700e-3447.06predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX12234.15.500e-3344.71hypothetical protein FisN_1Hu163 [Fistulifera sola... [more]
XP_009035740.11.500e-3042.71hypothetical protein AURANDRAFT_63268 [Aureococcus... [more]
XP_002949267.14.400e-3048.80hypothetical protein VOLCADRAFT_89542 [Volvox cart... [more]
XP_012846337.11.300e-2947.20PREDICTED: uncharacterized protein LOC105966321 [E... [more]
XP_020094236.14.800e-2945.73uncharacterized protein LOC109714175 isoform X1 [A... [more]
XP_010684032.16.300e-2944.51PREDICTED: uncharacterized protein LOC104898637 [B... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005674NSK005674Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02310.1NO03G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572028gene_1416Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02310.1NO03G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02310 ID=NO03G02310|Name=NO03G02310|organism=Nannochloropsis oceanica|type=gene|length=1099bp
ATGCAGCGTCCTATTGCCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTC
TGTCGTTTCCTTTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCG
CGCCCGCCCGCGGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCC
ATTACGTCCTACGTGGGGATCTGGAGCCCGACCATTCGCACgtacgtagt
agatcagagtatgttaaaaaggggaaaatatgtgggcatagattgtacgg
cgactaaaacccttccttccccctgtccatccacctccctctccctgaac
gcgaaacagTATCGTGGCAGACGCAAACATCCCTACGGCGCTGATCAAGT
GGTTCCATgtaagagacaatacaacaagaattttatgaactgacgcgtgg
gtgatgcatgcgcgctaattctttggcagaaacgattctatctgagcatg
tatgcaaggggccactcatacacatacatagactcatttgactctttaca
tcaccacccatcacacctgcgccacatatacacctctatgtcaactttca
aacgtctagGGCGCCAATATgtacgtatcgtgcttggaaagatccatccc
cgtgacgacggaactgtctctttgtttcttctaaaaaccgtacctcatca
ttcacttatcactgggtctgtccggtcacatatttgtaaatctaacgacc
atgtaaaatagGGGCATTGTTTTGACCACCATGGCCTCCTTCGGCGCCTA
TCTTGGATGGAAGATTCGCAACGGTGAGGGCGAGATTGAGTTTACCGGCA
AGACCGCCCGCGAGCTCCACCCAACCTTGATGGGCCTCGCTTTCCTTTTC
TTCTTCCTCGGCGGACAAGGTGGCCTTGTATTGCTCGATGTGCAGAATCA
CCCCATCTTGAATAGCACGCATGCCGTTACAGGATTGATTGGCATTGCCC
TTTTGGCGTTTCAGGCGTTGCTGCCCAAGCTTTTTGACGGCAATAGCGGA
GAGACCGCCCGTACCGCCCACGCATACCTTGGCTCGGCGACTATGGCCTT
ATTGTTCATCCACGCGGGCTTCGGCTTGCAGCTCGGGTTTTCGTTTTAA
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protein sequence of NO03G02310.1

>NO03G02310.1-protein ID=NO03G02310.1-protein|Name=NO03G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MQRPIAVVLTLLLCFQSVVSFLLPTPIVVRSATAPARGAGAVQMNGVTDA
ITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGW
KIRNGEGEIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPIL
NSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFI
HAGFGLQLGFSF*
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Synonyms
Publications