NO03G02310.1, NO03G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02310.1
Unique NameNO03G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length639
Alignment locationchr3:672576..673674 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:672576..673674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02310.1 vs.
Match: XP_002294460.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED88294.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 169.5 bits (428), Expect = 1.100e-38
Identity = 88/172 (51.16%), Postives = 110/172 (63.95%), Query Frame = 0 
Query:   45 NGVTDAITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGWKIRNGEGEIEFT----GKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPILNSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFIHAGFGLQLGFSF 213
            +G+ + + SYV IW+P  +       +P  L+ W HGA M  VL ++   GAY+GW+IR G GE E T    G T RE HP ++G AF FF LGGQGGLVLLD Q   IL S HA+T  + +ALLA QA+LPKLF   +G+ AR  HAYLG+ATM +LF H   GL LG SF
Sbjct:    5 DGIKEPVQSYVDIWTPLFKQASESGLLPDFLLHWGHGAAMATVLLSLGVVGAYMGWQIRFGNGE-EVTPLTLGDTIREAHPKIIGGAFFFFLLGGQGGLVLLDTQGQSILESPHAMTAALSVALLATQAVLPKLFATENGKLARDVHAYLGTATMTVLFAHLVTGLNLGLSF 175
The following BLAST results are available for this feature:
BLAST of NO03G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002294460.11.100e-3851.16predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02310NO03G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02310.1NO03G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02310.1.cds1NO03G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02310.1.cds2NO03G02310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02310.1.cds3NO03G02310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02310.1.cds4NO03G02310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02310.1 ID=NO03G02310.1|Name=NO03G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
ATGCAGCGTCCTATTGCCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTC
TGTCGTTTCCTTTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCG
CGCCCGCCCGCGGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCC
ATTACGTCCTACGTGGGGATCTGGAGCCCGACCATTCGCACTATCGTGGC
AGACGCAAACATCCCTACGGCGCTGATCAAGTGGTTCCATGGCGCCAATA
TGGGCATTGTTTTGACCACCATGGCCTCCTTCGGCGCCTATCTTGGATGG
AAGATTCGCAACGGTGAGGGCGAGATTGAGTTTACCGGCAAGACCGCCCG
CGAGCTCCACCCAACCTTGATGGGCCTCGCTTTCCTTTTCTTCTTCCTCG
GCGGACAAGGTGGCCTTGTATTGCTCGATGTGCAGAATCACCCCATCTTG
AATAGCACGCATGCCGTTACAGGATTGATTGGCATTGCCCTTTTGGCGTT
TCAGGCGTTGCTGCCCAAGCTTTTTGACGGCAATAGCGGAGAGACCGCCC
GTACCGCCCACGCATACCTTGGCTCGGCGACTATGGCCTTATTGTTCATC
CACGCGGGCTTCGGCTTGCAGCTCGGGTTTTCGTTTTAA
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protein sequence of NO03G02310.1

>NO03G02310.1-protein ID=NO03G02310.1-protein|Name=NO03G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MQRPIAVVLTLLLCFQSVVSFLLPTPIVVRSATAPARGAGAVQMNGVTDA
ITSYVGIWSPTIRTIVADANIPTALIKWFHGANMGIVLTTMASFGAYLGW
KIRNGEGEIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPIL
NSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFI
HAGFGLQLGFSF*
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mRNA from alignment at chr3:672576..673674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02310.1 ID=NO03G02310.1|Name=NO03G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp|location=Sequence derived from alignment at chr3:672576..673674+ (Nannochloropsis oceanica)
ATGCAGCGTCCTATTGCCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTC
TGTCGTTTCCTTTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCG
CGCCCGCCCGCGGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCC
ATTACGTCCTACGTGGGGATCTGGAGCCCGACCATTCGCACGTACGTAGT
AGATCAGAGTATGTTAAAAAGGGGAAAATATGTGGGCATAGATTGTACGG
CGACTAAAACCCTTCCTTCCCCCTGTCCATCCACCTCCCTCTCCCTGAAC
GCGAAACAGTATCGTGGCAGACGCAAACATCCCTACGGCGCTGATCAAGT
GGTTCCATGTAAGAGACAATACAACAAGAATTTTATGAACTGACGCGTGG
GTGATGCATGCGCGCTAATTCTTTGGCAGAAACGATTCTATCTGAGCATG
TATGCAAGGGGCCACTCATACACATACATAGACTCATTTGACTCTTTACA
TCACCACCCATCACACCTGCGCCACATATACACCTCTATGTCAACTTTCA
AACGTCTAGGGCGCCAATATGTACGTATCGTGCTTGGAAAGATCCATCCC
CGTGACGACGGAACTGTCTCTTTGTTTCTTCTAAAAACCGTACCTCATCA
TTCACTTATCACTGGGTCTGTCCGGTCACATATTTGTAAATCTAACGACC
ATGTAAAATAGGGGCATTGTTTTGACCACCATGGCCTCCTTCGGCGCCTA
TCTTGGATGGAAGATTCGCAACGGTGAGGGCGAGATTGAGTTTACCGGCA
AGACCGCCCGCGAGCTCCACCCAACCTTGATGGGCCTCGCTTTCCTTTTC
TTCTTCCTCGGCGGACAAGGTGGCCTTGTATTGCTCGATGTGCAGAATCA
CCCCATCTTGAATAGCACGCATGCCGTTACAGGATTGATTGGCATTGCCC
TTTTGGCGTTTCAGGCGTTGCTGCCCAAGCTTTTTGACGGCAATAGCGGA
GAGACCGCCCGTACCGCCCACGCATACCTTGGCTCGGCGACTATGGCCTT
ATTGTTCATCCACGCGGGCTTCGGCTTGCAGCTCGGGTTTTCGTTTTAA
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Coding sequence (CDS) from alignment at chr3:672576..673674+

>NO03G02310.1 ID=NO03G02310.1|Name=NO03G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr3:672576..673674+ (Nannochloropsis oceanica)
ATGCAGCGTCCTATTGCCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTC
TGTCGTTTCCTTTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCG
CGCCCGCCCGCGGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCC
ATTACGTCCTACGTGGGGATCTGGAGCCCGACCATTCGCACTATCGTGGC
AGACGCAAACATCCCTACGGCGCTGATCAAGTGGTTCCATGGCGCCAATA
TGGGCATTGTTTTGACCACCATGGCCTCCTTCGGCGCCTATCTTGGATGG
AAGATTCGCAACGGTGAGGGCGAGATTGAGTTTACCGGCAAGACCGCCCG
CGAGCTCCACCCAACCTTGATGGGCCTCGCTTTCCTTTTCTTCTTCCTCG
GCGGACAAGGTGGCCTTGTATTGCTCGATGTGCAGAATCACCCCATCTTG
AATAGCACGCATGCCGTTACAGGATTGATTGGCATTGCCCTTTTGGCGTT
TCAGGCGTTGCTGCCCAAGCTTTTTGACGGCAATAGCGGAGAGACCGCCC
GTACCGCCCACGCATACCTTGGCTCGGCGACTATGGCCTTATTGTTCATC
CACGCGGGCTTCGGCTTGCAGCTCGGGTTTTCGTTTTAA
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Synonyms
Publications