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Properties
| Property Name | Value |
|---|
| Description | Protein nlrc3 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr3 | genome | chr3:641561..644707 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001611 | Leu-rich_rpt |
Homology
BLAST of NO03G02160 vs. NCBI_GenBank
Match: EWM29682.1 (protein nlrc3 [Nannochloropsis gaditana]) HSP 1 Score: 120.9 bits (302), Expect = 2.300e-23 Identity = 224/386 (58.03%), Postives = 244/386 (63.21%), Query Frame = 0
Query: 640 VLAHLGGAYPQALEALSNDQSLEFLRMRRREPAADYRHLVATAAATVTVSRGVVSFPPPPLPVHSMVFGQNGVREGGRGEMGKASTTHSGSNCDEVAMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVNSPYTCPYPQSXXXXXXXXXXXXPSVIHGLVACTHAPFDPAELFSLHQFYFSPPPNPVGATPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESEAHLPPTKRQCNNTTRVRVGVYPRLQQQLEVMLKENGSQDGKVLVLLRQLRFLEESVGAGGEPPYTPEMLEGVLLDALAMA 1026
VLA LGG PQ L+ALSN+QSL FLR++RREP AD R LVA AA + +R S P P AS + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXX P Q P++ GLV CT APFD AEL +LH F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESEAHLPPTKRQCN +RVRV YP LQ++LEVML G ++ +VL LLRQLRFLEE+VG +P YTPE LE VLL +L+ A
Sbjct: 606 VLARLGGGQPQGLDALSNEQSLAFLRLKRREPEADVRQLVAMVAARMPAARNSASSPRTP-----------------------ASWSVQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTFYSRSGGQEKHAHR---------------PRDQVHPPDGMAAGSLPPALACGLVNCTKAPFDGAELSALHHF--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESEAHLPPTKRQCNLNSRVRVAAYPHLQRRLEVMLSNRGREEPQVLTLLRQLRFLEENVGPASKPCYTPETLENVLLRSLSTA 939
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02160 ID=NO03G02160|Name=NO03G02160|organism=Nannochloropsis oceanica|type=gene|length=3147bp
ATGGCAACCACTACCACCACCCCTGCGACATTCTCCCCGCAGCAGCCCCC
ATCACTAGCACCACCAGCAGCAGCACCCCCAACGCCGGTGGCCGCCGCAA
TGGCTGCGTCGCTTGCGAGCTCGTCCTCCTCTTCCGGGGCGGGCCTATCT
CCCGCCCGACACGTGTACTCTTTTCCTCCCTGCGTCGTAGGCAGCGGAAA
CGGCAGTAGTAGCAGAATTGGTGATGCGAGCAGCAACAGTGATAATATGC
GCATGGGTTGCGTTACTCCTTACATCTCCCCCACCACTCGAAACCGGAAT
GGCGAACTCGCCTTGGGCCGCTCGTCGAGCGCACCCTTGCTAGCACCAGG
CGCATCAGCAACAGCAGCTATCACAGAACCAGACGCCAAGACCCTCTCGA
TGAGAGACGAATTGCAGTGCAGTAGCGGTCATTTATCGCGAACGGGACCG
TCGACGGTTGCTGGAGTAGGAGAGGTTCAGGGGAGCAACACTGCCAACAG
CCAGGCGTCAAAGTTAGCGACCACAACTTTCGCCTCCACGACCCGCAACA
CCACCAAAGCCTTGCTTCGAAAACTCGGCATTTTGTCATCGAATCCCTTG
TCATCCGACAAAAGCAGCATGGCTGCCGGAGTAGGAGCAGCAGGAGCAGG
AGCAGGGAAATCCGAGAAACACATACCACGACCACATTACGAGCATCAGT
ATCAGCAGCAACATCAGCAGCAACAGGACCGAGCGCACCATAGCAGCTGT
AACAGATTCCCATCTCCCTCTTCTCCATCATGCTTCATTAGCAGAAATAG
GACAGGGGAGCTGATACCCTCGAAACAAAACAGCAAAAACATAAACGGCA
ACAGCCACCATGGCGGTGTGCCCACCGACCTTGTCCTAGATAACAAGCAC
ATTACCGGCCCTCAGGCAAAAAAACTCTGTACGGCCTTAGGCAGCGACAC
GACCATTGTCAGCCTGAAGGTCGGTTGCAACGAATTAGGAGACGAAGGAG
CAGCAGCTGTGGCCCAAGCGCTGGCGCACCACCCTTCGTTAGTAACACTC
GATTTGGGATTTAATGGAATAGGAGATCGAGGAGCAGAAGCTTTGGGTCG
AAGTCTCTGCTTGAATCGTTGTCTGAAAACGCTATATCTATCTGGGAATT
GTATTGGTGCCGCAGGCGCTCAGGGACTTGGACAGGCTTTACGGCACAAT
GTCAGCTTGGAGGTGCTTCATCTGACAGGGAATGCGATAGGACAAGGGGG
GGCAGCGGCCTTAGCAGAAGGGTTAGTACAAAACCGGTCGCTCCAAAGAC
TTTATCTGGCGGGCAACGCGTTGGGTCCGCGCGGAAGTGCCGAGCTTTTC
CGTGGGTTGGCGCGAAACACGGGTTTGGTGTGTTTGTTTTTGAGTGATAA
TGGAATCGGAGACGAGGGGGCCATGGCGCTGGCAGGGGCGTTGGTGCAGC
ACGGGCGGTTGCAGGTGTTGGAGTTGGGTTTCAACGGATTGACTGCCATA
GGATTGGCTCCTCTCCTTGCTGCCTTGAAAGGTTGCACCTCCCTCCAATT
TCTTCGGTTGGACAACAATGAAGTGGACAATCGAGGCGCGGCGGAAATAG
CTCGTGCGCTGCCGGCACTACCCGGGCTGAGACTTTTGGATGTTGGATTC
AACTCGATTCGAACGGAGGGGATAGCGGCGCTCATGCGGTCTGTTGCAGG
GCATACGGGCCTCCGAGCGCTGACGTTATCCGGTAATACGCTCAAGACGG
AGGGAGCGAAGGCTGTTGCTGAGGCGCTGTTGCACAATAGCACCTTGCAA
GAGCTTCACCTCGATCATACATCCGTGGGGCAGGCGGGTGAGAGGTTTTT
GGCCTCTGGATTGGAAGGGAATCCGTACCCGAACTTGTGCGTGTTGACGG
GGTTGAGGCTCGGCTATGTCCTGGCGCATTTGGGAGGAGCATACCCGCAG
GCGTTGGAGGCTTTGAGCAACGATCAAAGCCTGGAGTTTTTGCGGATGAG
ACGCCGGGAGCCCGCGGCAGATTATCGGCATTTGGTAGCAACAGCTGCGG
CAACTGTGACCGTTTCTCGGGGCGTCGTATCGTTTCCTCCTCCTCCACTA
CCAGTGCATTCGATGGTGTTCGGACAGAATGGAGTTAGAGAGGGAGGAAG
AGGGGAAATGGGGAAAGCGAGCACTACTCACAGTGGAAGCAACTGTGACG
AAGTAGCCATGATGATGCTGAGCACCCCGCCCTTGCCAAACTTTTATTCC
CGGAGCAGCAATCATCAAGACAGACAGGGGAATCGTTCTCACCACCACCA
CAACCAGGAGCAGCAGCAGCAGCCGCAGCAGCAGCGGCAGCAGTACCACC
ATCAGCCACCACCACATCCCCCCCGCGTCAATTCCCCCTATACCTGCCCC
TATCCTCAGTCCCAAACCCTACCCTATCCACACACCGCTCCCCTTCCTCC
TTCTGTCATACACGGACTTGTGGCCTGCACACATGCCCCTTTCGACCCTG
CTGAACTCTTCTCCTTGCACCAATTCTACTTCTCCCCCCCACCCAATCCT
GTTGGGGCGACCCCAATAAGCAATACATCATCTCCAGAACAGCATTACTA
TCACCATCGTGGGGCTCTGATGGGAGGAGGGAGGGAGAAAGGGGACGCGG
AAGCTGCCGCATTTTATGCGCAGCAGCAGCAACTACAACAACAACAGCAA
TTGTTGGCAGCGAGAGGGGCGGCGGGACAACCAGTGCAGGGGTTTGTGGT
TAATGGAGGAGGAGGGGAAGGAGGAGGGGAGAAGTTAGCAGTTGCTGGGA
ATAATGTCATGATGATGATGAGGGTCGAGAGCGAGGCGCACTTGCCACCG
ACGAAGAGGCAATGTAACAACACGACACGGGTGCGTGTGGGGGTTTACCC
GCGCTTGCAGCAGCAATTGGAGGTCATGTTGAAGGAGAATGGGAGCCAGG
ATGGGAAAGTGTTGGTGTTGTTGAGACAGTTGCGGTTTTTGGAAGAAAGC
GTGGGGGCGGGCGGGGAGCCACCTTACACACCCGAGATGCTCGAAGGTGT
TTTGTTGGATGCCTTGGCGATGGCGGAGGTTGGGTTGCTCCCCGGGGGGG
GAAACGGAGGGGGGGGAGGGCAGAAAGGGCAAAGCAATTTTAGATGA back to topprotein sequence of NO03G02160.1 >NO03G02160.1-protein ID=NO03G02160.1-protein|Name=NO03G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1049bp
MATTTTTPATFSPQQPPSLAPPAAAPPTPVAAAMAASLASSSSSSGAGLS
PARHVYSFPPCVVGSGNGSSSRIGDASSNSDNMRMGCVTPYISPTTRNRN
GELALGRSSSAPLLAPGASATAAITEPDAKTLSMRDELQCSSGHLSRTGP
STVAGVGEVQGSNTANSQASKLATTTFASTTRNTTKALLRKLGILSSNPL
SSDKSSMAAGVGAAGAGAGKSEKHIPRPHYEHQYQQQHQQQQDRAHHSSC
NRFPSPSSPSCFISRNRTGELIPSKQNSKNINGNSHHGGVPTDLVLDNKH
ITGPQAKKLCTALGSDTTIVSLKVGCNELGDEGAAAVAQALAHHPSLVTL
DLGFNGIGDRGAEALGRSLCLNRCLKTLYLSGNCIGAAGAQGLGQALRHN
VSLEVLHLTGNAIGQGGAAALAEGLVQNRSLQRLYLAGNALGPRGSAELF
RGLARNTGLVCLFLSDNGIGDEGAMALAGALVQHGRLQVLELGFNGLTAI
GLAPLLAALKGCTSLQFLRLDNNEVDNRGAAEIARALPALPGLRLLDVGF
NSIRTEGIAALMRSVAGHTGLRALTLSGNTLKTEGAKAVAEALLHNSTLQ
ELHLDHTSVGQAGERFLASGLEGNPYPNLCVLTGLRLGYVLAHLGGAYPQ
ALEALSNDQSLEFLRMRRREPAADYRHLVATAAATVTVSRGVVSFPPPPL
PVHSMVFGQNGVREGGRGEMGKASTTHSGSNCDEVAMMMLSTPPLPNFYS
RSSNHQDRQGNRSHHHHNQEQQQQPQQQRQQYHHQPPPHPPRVNSPYTCP
YPQSQTLPYPHTAPLPPSVIHGLVACTHAPFDPAELFSLHQFYFSPPPNP
VGATPISNTSSPEQHYYHHRGALMGGGREKGDAEAAAFYAQQQQLQQQQQ
LLAARGAAGQPVQGFVVNGGGGEGGGEKLAVAGNNVMMMMRVESEAHLPP
TKRQCNNTTRVRVGVYPRLQQQLEVMLKENGSQDGKVLVLLRQLRFLEES
VGAGGEPPYTPEMLEGVLLDALAMAEVGLLPGGGNGGGGGQKGQSNFR* back to top
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