NO03G02040, NO03G02040 (gene) Nannochloropsis oceanica

Overview
NameNO03G02040
Unique NameNO03G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr3:614221..614967 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:614221..614967 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO03G02040 vs. NCBI_GenBank
Match: EWM29623.1 (hypothetical protein Naga_100050g39 [Nannochloropsis gaditana])

HSP 1 Score: 323.2 bits (827), Expect = 7.200e-85
Identity = 173/234 (73.93%), Postives = 195/234 (83.33%), Query Frame = 0
Query:   17 DAFTMKAGTHSSPTPHRHRRTIS-HGTRKDALLQTSFGALALGFAASGVVMPSPRRAQ-AFPFGGGEDVTGALDEVARARQKVEEVLSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQKRAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGGK-EVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVCVWPDELGAK 248
            +A+TMKAG   S    R   + S   +R+DAL   S  A+ LGFAASG+++  PRR + AFPFGG  DV G LD+VARARQKVEEVLSGLKSKQLKGGK+DSAT+VRYMDAHYKPLQEKM+ LAPK+K+ DEEKQKR E LPLLLKGHL ELAAAARTGVA+EQLQEMEEVAESVDEFLALA+E G+ +V+ YLGPAPEFDV REYGPFACEFWGKVRLPESNVCVWPDE+  K
Sbjct:   38 NAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK 271          
BLAST of NO03G02040 vs. NCBI_GenBank
Match: CEM37397.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 136.7 bits (343), Expect = 9.600e-29
Identity = 96/236 (40.68%), Postives = 131/236 (55.51%), Query Frame = 0
Query:   14 SSADAFTMKAGTHSSPTPHRHRRTISHGTRK------DALLQTSFGALALG--FAASGVVMPSPRRAQAFPFGGGED--VTGALDEVARARQKVEEVLSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQKRAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGGKEVKSYLGPAPEFDVTRE-YGPFACEFWGKVRLPESNVC 239
            SS DAF   + +H     H  RR  S    K        L +    ++ALG   A S +  PSP  A + PF   E+  +  A+ E+A  R  V ++L  LK+ +LKGG  DS T+  ++  +Y+P+QEKM  L+ K+ L D  K +R  LLPLLLKGHLAEL  A  +     QL+E+EEV E+++EFL LA    K     +   P+F+  ++ YG F CEFWGK RLPESN C
Sbjct:   16 SSHDAFISPSASHMG-LRHALRRAPSSSLLKMTADESSTLPRRRMLSIALGSLVAPSLLASPSPSSAISLPFFESEEQKIERAVGEIADYRPYVLKILDKLKTGKLKGGTYDSGTVANFLGIYYRPMQEKMETLSAKIDLEDTTKTERLRLLPLLLKGHLAELREAVISQRPERQLEEVEEVGETLNEFLTLA--SAKYTIPPIPVPPDFNPEKDYYGIFGCEFWGKRRLPESNRC 248          
BLAST of NO03G02040 vs. NCBI_GenBank
Match: CBJ31333.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.4 bits (285), Expect = 5.100e-22
Identity = 75/201 (37.31%), Postives = 113/201 (56.22%), Query Frame = 0
Query:   41 GTRKDALLQTSFGALALGFAASGVVMPSPRRAQAFPFGGGEDVTGALDEVARA---RQKVEEVLSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQKRAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGGKEVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVC 239
            GT + A L+++ G    G AA   V+  P    AF    G      L+EV +     + V ++   LK+  LKGG EDS  ++R ++ + +P+QE+ML +AP ++LA  E ++R +LLPL++KGHL EL AA  T  A EQL+E++   E++DEF+ALAK   +        AP+ D   + G F C F+G  R   S+ C
Sbjct:   63 GTSRAAFLRSALG----GAAALATVVARPTETPAFALPFGPKDNPELEEVVKVAGYSRFVNKLEQDLKAGALKGGPEDSVVVLRVLEVYLEPMQEEMLKVAPLMQLAGRENRERVKLLPLIMKGHLLELKAACGTKDAKEQLEEVQXXRETLDEFIALAKTRYEIAPLDPEGAPDGD---QLGIFGCSFYGMKRTDGSSRC 256          
The following BLAST results are available for this feature:
BLAST of NO03G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29623.17.200e-8573.93hypothetical protein Naga_100050g39 [Nannochlorops... [more]
CEM37397.19.600e-2940.68unnamed protein product [Vitrella brassicaformis C... [more]
CBJ31333.15.100e-2237.31expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005695NSK005695Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02040.1NO03G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100050g39gene985Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02040.1NO03G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02040 ID=NO03G02040|Name=NO03G02040|organism=Nannochloropsis oceanica|type=gene|length=747bp
ATGCGGCTTGCTATCATTGTCACGGTGGGTTTTCTGTCATCATCGGCGGA
TGCCTTTACAATGAAGGCGGGTACCCATTCATCTCCTACCCCACATCGTC
ATCGTCGAACCATCTCCCATGGCACCCGCAAAGACGCTTTGTTGCAGACT
TCCTTCGGTGCTCTGGCTTTGGGTTTTGCGGCCAGTGGCGTGGTCATGCC
ATCACCACGCCGGGCGCAGGCCTTTCCGTTCGGCGGGGGGGAAGATGTGA
CAGGAGCCTTGGACGAAGTGGCCCGTGCCCGTCAAAAAGTGGAAGAGGTA
TTGAGCGGGTTGAAATCTAAGCAACTAAAGGGGGGCAAGGAAGACTCGGC
GACGATTGTTCGATACATGGATGCGCATTACAAGCCGTTGCAAGAAAAGA
TGCTGGTCTTGGCTCCCAAGTTGAAGCTTGCGGATGAAGAGAAGCAGAAG
CGCGCGGAGCTCTTGCCTCTGTTGTTAAAAGGGCACTTGGCCGAGCTAGC
AGCCGCGGCACGCACGGGTGTTGCCAGTGAACAGCTACAGGAGATGGAGG
AGGTGGCAGAGAGTGTGGATGAGTTTTTGGCCCTGGCGAAGGAGGGGGGA
AAGGAAGTGAAGAGCTACTTGGGCCCGGCGCCTGAATTTGACGTCACGAG
GGAGTATGGACCGTTTGCGTGCGAATTCTGGGGAAAAGTGAGGTTGCCCG
AAAGCAATGTATGTGTGTGGCCTGATGAATTGGGCGCGAAGAAGTAG
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protein sequence of NO03G02040.1

>NO03G02040.1-protein ID=NO03G02040.1-protein|Name=NO03G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MRLAIIVTVGFLSSSADAFTMKAGTHSSPTPHRHRRTISHGTRKDALLQT
SFGALALGFAASGVVMPSPRRAQAFPFGGGEDVTGALDEVARARQKVEEV
LSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQK
RAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGG
KEVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVCVWPDELGAKK*
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Synonyms
Publications