NO03G02040.1, NO03G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02040.1
Unique NameNO03G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr3:614221..614967 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:614221..614967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02040.1 vs.
Match: EWM29623.1 (hypothetical protein Naga_100050g39 [Nannochloropsis gaditana])

HSP 1 Score: 323.2 bits (827), Expect = 7.200e-85
Identity = 173/234 (73.93%), Postives = 195/234 (83.33%), Query Frame = 0
Query:   17 DAFTMKAGTHSSPTPHRHRRTISHG-TRKDALLQTSFGALALGFAASGVVMPSPRRAQA-FPFGGGEDVTGALDEVARARQKVEEVLSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQKRAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGGK-EVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVCVWPDELGAK 248
            +A+TMKAG   S    R   + S   +R+DAL   S  A+ LGFAASG+++  PRR +A FPFGG  DV G LD+VARARQKVEEVLSGLKSKQLKGGK+DSAT+VRYMDAHYKPLQEKM+ LAPK+K+ DEEKQKR E LPLLLKGHL ELAAAARTGVA+EQLQEMEEVAESVDEFLALA+E G+ +V+ YLGPAPEFDV REYGPFACEFWGKVRLPESNVCVWPDE+  K
Sbjct:   38 NAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK 271          
The following BLAST results are available for this feature:
BLAST of NO03G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29623.17.200e-8573.93hypothetical protein Naga_100050g39 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02040NO03G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02040.1NO03G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02040.1.cds1NO03G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02040.1 ID=NO03G02040.1|Name=NO03G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGCGGCTTGCTATCATTGTCACGGTGGGTTTTCTGTCATCATCGGCGGA
TGCCTTTACAATGAAGGCGGGTACCCATTCATCTCCTACCCCACATCGTC
ATCGTCGAACCATCTCCCATGGCACCCGCAAAGACGCTTTGTTGCAGACT
TCCTTCGGTGCTCTGGCTTTGGGTTTTGCGGCCAGTGGCGTGGTCATGCC
ATCACCACGCCGGGCGCAGGCCTTTCCGTTCGGCGGGGGGGAAGATGTGA
CAGGAGCCTTGGACGAAGTGGCCCGTGCCCGTCAAAAAGTGGAAGAGGTA
TTGAGCGGGTTGAAATCTAAGCAACTAAAGGGGGGCAAGGAAGACTCGGC
GACGATTGTTCGATACATGGATGCGCATTACAAGCCGTTGCAAGAAAAGA
TGCTGGTCTTGGCTCCCAAGTTGAAGCTTGCGGATGAAGAGAAGCAGAAG
CGCGCGGAGCTCTTGCCTCTGTTGTTAAAAGGGCACTTGGCCGAGCTAGC
AGCCGCGGCACGCACGGGTGTTGCCAGTGAACAGCTACAGGAGATGGAGG
AGGTGGCAGAGAGTGTGGATGAGTTTTTGGCCCTGGCGAAGGAGGGGGGA
AAGGAAGTGAAGAGCTACTTGGGCCCGGCGCCTGAATTTGACGTCACGAG
GGAGTATGGACCGTTTGCGTGCGAATTCTGGGGAAAAGTGAGGTTGCCCG
AAAGCAATGTATGTGTGTGGCCTGATGAATTGGGCGCGAAGAAGTAG
back to top

protein sequence of NO03G02040.1

>NO03G02040.1-protein ID=NO03G02040.1-protein|Name=NO03G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MRLAIIVTVGFLSSSADAFTMKAGTHSSPTPHRHRRTISHGTRKDALLQT
SFGALALGFAASGVVMPSPRRAQAFPFGGGEDVTGALDEVARARQKVEEV
LSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQK
RAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGG
KEVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVCVWPDELGAKK*
back to top

mRNA from alignment at chr3:614221..614967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02040.1 ID=NO03G02040.1|Name=NO03G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp|location=Sequence derived from alignment at chr3:614221..614967- (Nannochloropsis oceanica)
ATGCGGCTTGCTATCATTGTCACGGTGGGTTTTCTGTCATCATCGGCGGA TGCCTTTACAATGAAGGCGGGTACCCATTCATCTCCTACCCCACATCGTC ATCGTCGAACCATCTCCCATGGCACCCGCAAAGACGCTTTGTTGCAGACT TCCTTCGGTGCTCTGGCTTTGGGTTTTGCGGCCAGTGGCGTGGTCATGCC ATCACCACGCCGGGCGCAGGCCTTTCCGTTCGGCGGGGGGGAAGATGTGA CAGGAGCCTTGGACGAAGTGGCCCGTGCCCGTCAAAAAGTGGAAGAGGTA TTGAGCGGGTTGAAATCTAAGCAACTAAAGGGGGGCAAGGAAGACTCGGC GACGATTGTTCGATACATGGATGCGCATTACAAGCCGTTGCAAGAAAAGA TGCTGGTCTTGGCTCCCAAGTTGAAGCTTGCGGATGAAGAGAAGCAGAAG CGCGCGGAGCTCTTGCCTCTGTTGTTAAAAGGGCACTTGGCCGAGCTAGC AGCCGCGGCACGCACGGGTGTTGCCAGTGAACAGCTACAGGAGATGGAGG AGGTGGCAGAGAGTGTGGATGAGTTTTTGGCCCTGGCGAAGGAGGGGGGA AAGGAAGTGAAGAGCTACTTGGGCCCGGCGCCTGAATTTGACGTCACGAG GGAGTATGGACCGTTTGCGTGCGAATTCTGGGGAAAAGTGAGGTTGCCCG AAAGCAATGTATGTGTGTGGCCTGATGAATTGGGCGCGAAGAAGTAG
back to top

Coding sequence (CDS) from alignment at chr3:614221..614967-

>NO03G02040.1 ID=NO03G02040.1|Name=NO03G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr3:614221..614967- (Nannochloropsis oceanica)
ATGCGGCTTGCTATCATTGTCACGGTGGGTTTTCTGTCATCATCGGCGGA
TGCCTTTACAATGAAGGCGGGTACCCATTCATCTCCTACCCCACATCGTC
ATCGTCGAACCATCTCCCATGGCACCCGCAAAGACGCTTTGTTGCAGACT
TCCTTCGGTGCTCTGGCTTTGGGTTTTGCGGCCAGTGGCGTGGTCATGCC
ATCACCACGCCGGGCGCAGGCCTTTCCGTTCGGCGGGGGGGAAGATGTGA
CAGGAGCCTTGGACGAAGTGGCCCGTGCCCGTCAAAAAGTGGAAGAGGTA
TTGAGCGGGTTGAAATCTAAGCAACTAAAGGGGGGCAAGGAAGACTCGGC
GACGATTGTTCGATACATGGATGCGCATTACAAGCCGTTGCAAGAAAAGA
TGCTGGTCTTGGCTCCCAAGTTGAAGCTTGCGGATGAAGAGAAGCAGAAG
CGCGCGGAGCTCTTGCCTCTGTTGTTAAAAGGGCACTTGGCCGAGCTAGC
AGCCGCGGCACGCACGGGTGTTGCCAGTGAACAGCTACAGGAGATGGAGG
AGGTGGCAGAGAGTGTGGATGAGTTTTTGGCCCTGGCGAAGGAGGGGGGA
AAGGAAGTGAAGAGCTACTTGGGCCCGGCGCCTGAATTTGACGTCACGAG
GGAGTATGGACCGTTTGCGTGCGAATTCTGGGGAAAAGTGAGGTTGCCCG
AAAGCAATGTATGTGTGTGGCCTGATGAATTGGGCGCGAAGAAGTAG
back to top
Synonyms
Publications