NO03G02010, NO03G02010 (gene) Nannochloropsis oceanica

Overview
NameNO03G02010
Unique NameNO03G02010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr3:609825..610493 -

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Properties
Property NameValue
Description4-hydroxy-4-methyl-2-oxoglutarate aldolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:609825..610493 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036704RraA/RraA-like_sf
IPR005493RNase_E_inh/diMeMenaQ_MeTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
BLAST of NO03G02010 vs. NCBI_GenBank
Match: EWM29634.1 (regulator of ribonuclease activity a [Nannochloropsis gaditana])

HSP 1 Score: 287.0 bits (733), Expect = 5.200e-74
Identity = 147/204 (72.06%), Postives = 169/204 (82.84%), Query Frame = 0
Query:   20 TSSPRVVISSRTTTLALLLAASTANPLCHSTA-AHMMSSVQAVPKMFATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATALH 223
            TSS   + +SR +  AL +AA+T   LC   A AHMMS+  + P   ATADLCD HE +LQVA+GNAF S+GQ +SF G+IVTIKCFENNPLVR  LSEPG G+VLVVDGGGSLRRALFGDNIAALAVKNGWAGV+IYGAIRDSAV++ +PLGVKALGTNP+KS+KQHPGDR+VVV FAGVTF PGHYVY+D DGI+VS T LH
Sbjct:   22 TSSSHALSASRNSNAALFMAATTFT-LCQPIAIAHMMSTCASRPP--ATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLH 222          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: XP_005855741.1 (regulator of ribonuclease activity a, partial [Nannochloropsis gaditana CCMP526] >EKU20623.1 regulator of ribonuclease activity a, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.5 bits (711), Expect = 1.800e-71
Identity = 137/178 (76.97%), Postives = 154/178 (86.52%), Query Frame = 0
Query:   46 LCHSTA-AHMMSSVQAVPKMFATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATALH 223
            LC   A AHMMS+  + P   ATADLCD HE +LQVA+GNAF S+GQ +SF G+IVTIKCFENNPLVR  LSEPG G+VLVVDGGGSLRRALFGDNIAALAVKNGWAGV+IYGAIRDSAV++ +PLGVKALGTNP+KS+KQHPGDR+VVV FAGVTF PGHYVY+D DGI+VS T LH
Sbjct:    3 LCQPIAIAHMMSTCASRPP--ATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLH 178          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_053422471.1 (RraA family protein [Azoarcus sp. PA01] >KON80291.1 ribonuclease activity regulator protein RraA [Azoarcus sp. PA01])

HSP 1 Score: 202.6 bits (514), Expect = 1.300e-48
Identity = 98/157 (62.42%), Postives = 119/157 (75.80%), Query Frame = 0
Query:   65 FATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            F TADLCD+HE +++V     FRSYG   +F G I T+K FE+N LVR  L EPG GKVLVVDGGGSLR AL GD +A L VKNGWAGVI+YG IRDS  +  + LGV ALGT+P+KS K+  G+RD+ V F GVTFTPGH++YAD+DGIVVS ++L
Sbjct:    3 FQTADLCDAHETRVKVV-SPMFRSYGARTAFCGPITTLKVFEDNSLVRAALEEPGEGKVLVVDGGGSLRCALVGDQLALLGVKNGWAGVIVYGCIRDSKPIGTMELGVFALGTHPLKSIKKGAGERDIAVTFGGVTFTPGHFLYADEDGIVVSESSL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: OHC71448.1 (ribonuclease activity regulator protein RraA [Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24])

HSP 1 Score: 200.3 bits (508), Expect = 6.300e-48
Identity = 91/156 (58.33%), Postives = 122/156 (78.21%), Query Frame = 0
Query:   67 TADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATALH 223
            T DLCD+HE +++V E   F S+G  A+F G+I T+K FE+N LVR  L  PGN +VLV+DGGGSLRRAL GD +AALAVKNGWAG+++YG IRDS  +D + +GV A+ T+P+K+ K++ G+ D+ V F GVTFTPG ++YAD+DG++VSATALH
Sbjct:    5 TTDLCDAHEDKVRVVE-PMFSSFGGRAAFFGRIATLKLFEDNSLVRKTLESPGNNRVLVIDGGGSLRRALVGDQLAALAVKNGWAGIVVYGCIRDSRAIDEMDIGVFAIDTHPMKTVKKNVGEADIPVTFGGVTFTPGEWLYADEDGVIVSATALH 159          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_069037763.1 (RraA family protein [Methyloversatilis sp. RAC08] >AOF80617.1 RraA family protein [Methyloversatilis sp. RAC08])

HSP 1 Score: 198.7 bits (504), Expect = 1.800e-47
Identity = 93/155 (60.00%), Postives = 118/155 (76.13%), Query Frame = 0
Query:   67 TADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            TADLCD  E  L++     FRS+G  ++F G I T+K FE+N LVR  L  PGNGKVLVVDGGGS+RRAL GD IAALAVKNGWAG+++YG IRDSA + ++ +GV ALGT+P+K+ K++ G  D+ V+F G+ F PGHY+YAD DGI+VSA AL
Sbjct:    5 TADLCDQFEADLRIC-APMFRSFGGHSAFGGPISTLKLFEDNGLVRKALETPGNGKVLVVDGGGSMRRALVGDQIAALAVKNGWAGIVVYGCIRDSAAISQMTIGVMALGTHPLKTVKRNEGQSDITVSFGGIDFVPGHYLYADGDGIIVSARAL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_008061048.1 (RraA family protein [Methyloversatilis universalis] >EGK71848.1 Regulator of ribonuclease activity A [Methyloversatilis universalis FAM5])

HSP 1 Score: 197.6 bits (501), Expect = 4.100e-47
Identity = 93/156 (59.62%), Postives = 118/156 (75.64%), Query Frame = 0
Query:   66 ATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            +TADLCD  E +L++     FRSYG   SF G I T+K FE+N LVR  L  PGNG+VLVVDGGGS+RRAL GD IAALAVKNGWAG+++YG IRDSA +  + LGV ALGT+P+K+ K++ G  D+ V+F G+ F PGH++YAD DG++VSA AL
Sbjct:    4 STADLCDQFESELRIC-APMFRSYGGRTSFGGPITTLKLFEDNGLVRKALEAPGNGRVLVVDGGGSMRRALVGDQIAALAVKNGWAGIVVYGCIRDSAAIGEMDLGVFALGTHPLKTVKRNEGQADLTVSFGGIDFVPGHHLYADGDGVIVSARAL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: PKO82399.1 (ribonuclease activity regulator protein RraA [Betaproteobacteria bacterium HGW-Betaproteobacteria-13])

HSP 1 Score: 196.4 bits (498), Expect = 9.200e-47
Identity = 92/155 (59.35%), Postives = 117/155 (75.48%), Query Frame = 0
Query:   67 TADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            TADLCD+HE ++ V     FRS+G C++F G I T+K FE+N LVR  L   GNG+VLVVDGGGS+R AL GD +A L VKNGWAG+++YG IRDS  +  + LGV ALGT+P K+ K++ G+ D+ V F GVTFTPGHYVYAD+DG++VSAT L
Sbjct:    5 TADLCDAHEDKVSVL-APMFRSFGGCSAFGGAISTLKLFEDNSLVRKTLESAGNGRVLVVDGGGSMRCALVGDQLAELGVKNGWAGILVYGCIRDSKAIGEMNLGVFALGTHPRKTVKRNTGELDLAVTFGGVTFTPGHYVYADEDGVIVSATPL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_055424153.1 (RraA family protein [Tepidiphilus thermophilus] >CUB07898.1 RraA famliy [Tepidiphilus thermophilus])

HSP 1 Score: 195.3 bits (495), Expect = 2.000e-46
Identity = 93/157 (59.24%), Postives = 118/157 (75.16%), Query Frame = 0
Query:   65 FATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            F TADLCD+HE +++V      RSYG   +  G + T+K FE+N LVR +L+EPG G +LV+DGGGSLRRAL GDN+A LAVKNGWAGV++YG IRDSA + RLPLGV AL T+P+K+ K+  G RDV V+F GVTF PG + YAD+DG++VS   L
Sbjct:    3 FHTADLCDAHEDRVRVL-APMLRSYGGARAAGGPVRTLKIFEDNALVREMLAEPGQGAMLVIDGGGSLRRALLGDNLAELAVKNGWAGVVVYGCIRDSAAIGRLPLGVWALATHPMKTVKRGEGQRDVPVSFGGVTFAPGMFAYADEDGVIVSDAPL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: XP_002949311.1 (hypothetical protein VOLCADRAFT_120739 [Volvox carteri f. nagariensis] >EFJ49804.1 hypothetical protein VOLCADRAFT_120739 [Volvox carteri f. nagariensis])

HSP 1 Score: 194.9 bits (494), Expect = 2.700e-46
Identity = 104/189 (55.03%), Postives = 126/189 (66.67%), Query Frame = 0
Query:   45 PLCHSTAAHMMSSVQAVP---KMFATADLCDSHEP---------QLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            P   STAA  MSS    P       TADL D + P          +QV   N FR +G    FSG+  T+KC+ENNPLVR  L EPGNG+VLVVDGGGSLR AL GD +A   VKNGW+G+++ G IRDSA + ++PLGVKALGT+P+KSSK+ PG RDV V+F GVT +PG +VYAD DGI+VS   L
Sbjct:   21 PGLSSTAARAMSSGATPPPDVDRKGTADLTDKYMPDPVDTVCTRSVQVVTPNLFRDFGGKLRFSGQASTVKCYENNPLVRKALEEPGNGRVLVVDGGGSLRCALLGDMLAENGVKNGWSGILVNGCIRDSADIAKMPLGVKALGTHPLKSSKRDPGQRDVPVSFGGVTVSPGDWVYADGDGILVSKEEL 209          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_020164069.1 (RraA family protein [Methyloversatilis discipulorum])

HSP 1 Score: 194.5 bits (493), Expect = 3.500e-46
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 0
Query:   67 TADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            TADLCD  E +L++     FRSYG  A+F G+I T+K FE+N LVR  L  PGNG+VLVVDGGGS+RRAL GD IAALAVKNGWAG+++YG IRDSA +  + +GV ALGT+P+K+ K++ G  D+ V+F G+ F PGHY+YAD DG++V   +L
Sbjct:    5 TADLCDQFESELRIC-APMFRSYGGRAAFGGQITTLKLFEDNGLVRKALEAPGNGRVLVVDGGGSMRRALVGDQIAALAVKNGWAGIVVYGCIRDSAAIGEMDIGVCALGTHPLKTVKRNEGQVDLTVSFGGIDFVPGHYLYADADGVIVCPRSL 158          
The following BLAST results are available for this feature:
BLAST of NO03G02010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29634.15.200e-7472.06regulator of ribonuclease activity a [Nannochlorop... [more]
XP_005855741.11.800e-7176.97regulator of ribonuclease activity a, partial [Nan... [more]
WP_053422471.11.300e-4862.42RraA family protein [Azoarcus sp. PA01] >KON80291.... [more]
OHC71448.16.300e-4858.33ribonuclease activity regulator protein RraA [Rhod... [more]
WP_069037763.11.800e-4760.00RraA family protein [Methyloversatilis sp. RAC08] ... [more]
WP_008061048.14.100e-4759.62RraA family protein [Methyloversatilis universalis... [more]
PKO82399.19.200e-4759.35ribonuclease activity regulator protein RraA [Beta... [more]
WP_055424153.12.000e-4659.24RraA family protein [Tepidiphilus thermophilus] >C... [more]
XP_002949311.12.700e-4655.03hypothetical protein VOLCADRAFT_120739 [Volvox car... [more]
WP_020164069.13.500e-4658.06RraA family protein [Methyloversatilis discipuloru... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005699NSK005699Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02010.1NO03G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571936gene_1387Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g35gene988Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02010.1NO03G02010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02010 ID=NO03G02010|Name=NO03G02010|organism=Nannochloropsis oceanica|type=gene|length=669bp
ATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCACGAGCTCTTCC
TCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGGACCACCACCC
TCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATGTCACTCTACC
GCCGCACACATGATGAGTTCTGTACAAGCTGTCCCCAAAATGTTTGCCAC
AGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTGGCGGAAGGAA
ACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGGAAAAATTGTC
ACCATCAAGTGCTTCGAGAACAATCCCTTAGTCCGCACGATTCTGAGTGA
GCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGTTCCTTGCGCC
GGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAAGAATGGGTGG
GCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGGTGGTGGATCG
TCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATCAAAAGCTCGA
AGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGCAGGGGTGACG
TTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAATCGTGGTGTC
GGCGACGGCGCTTCATTAG
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protein sequence of NO03G02010.1

>NO03G02010.1-protein ID=NO03G02010.1-protein|Name=NO03G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MQRIALHSLRRVARALPQPTSSPRVVISSRTTTLALLLAASTANPLCHST
AAHMMSSVQAVPKMFATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIV
TIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGW
AGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVT
FTPGHYVYADQDGIVVSATALH*
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Synonyms
Publications