NO03G02010.1, NO03G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02010.1
Unique NameNO03G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr3:609825..610493 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:609825..610493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02010.1 vs.
Match: EWM29634.1 (regulator of ribonuclease activity a [Nannochloropsis gaditana])

HSP 1 Score: 287.0 bits (733), Expect = 5.200e-74
Identity = 147/204 (72.06%), Postives = 169/204 (82.84%), Query Frame = 0 
Query:   20 TSSPRVVISSRTTTLALLLAASTANPLCHSTA-AHMMSSVQAVPKMFATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATALH 223
            TSS   + +SR +  AL +AA+T   LC   A AHMMS+  + P   ATADLCD HE +LQVA+GNAF S+GQ +SF G+IVTIKCFENNPLVR  LSEPG G+VLVVDGGGSLRRALFGDNIAALAVKNGWAGV+IYGAIRDSAV++ +PLGVKALGTNP+KS+KQHPGDR+VVV FAGVTF PGHYVY+D DGI+VS T LH
Sbjct:   22 TSSSHALSASRNSNAALFMAATTFT-LCQPIAIAHMMSTCASRPP--ATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLH 222
The following BLAST results are available for this feature:
BLAST of NO03G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29634.15.200e-7472.06regulator of ribonuclease activity a [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02010NO03G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02010.1NO03G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02010.1.cds1NO03G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02010.1 ID=NO03G02010.1|Name=NO03G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
ATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCACGAGCTCTTCC
TCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGGACCACCACCC
TCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATGTCACTCTACC
GCCGCACACATGATGAGTTCTGTACAAGCTGTCCCCAAAATGTTTGCCAC
AGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTGGCGGAAGGAA
ACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGGAAAAATTGTC
ACCATCAAGTGCTTCGAGAACAATCCCTTAGTCCGCACGATTCTGAGTGA
GCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGTTCCTTGCGCC
GGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAAGAATGGGTGG
GCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGGTGGTGGATCG
TCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATCAAAAGCTCGA
AGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGCAGGGGTGACG
TTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAATCGTGGTGTC
GGCGACGGCGCTTCATTAG
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protein sequence of NO03G02010.1

>NO03G02010.1-protein ID=NO03G02010.1-protein|Name=NO03G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MQRIALHSLRRVARALPQPTSSPRVVISSRTTTLALLLAASTANPLCHST
AAHMMSSVQAVPKMFATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIV
TIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGW
AGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVT
FTPGHYVYADQDGIVVSATALH*
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mRNA from alignment at chr3:609825..610493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02010.1 ID=NO03G02010.1|Name=NO03G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=669bp|location=Sequence derived from alignment at chr3:609825..610493- (Nannochloropsis oceanica)
ATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCACGAGCTCTTCC
TCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGGACCACCACCC
TCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATGTCACTCTACC
GCCGCACACATGATGAGTTCTGTACAAGCTGTCCCCAAAATGTTTGCCAC
AGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTGGCGGAAGGAA
ACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGGAAAAATTGTC
ACCATCAAGTGCTTCGAGAACAATCCCTTAGTCCGCACGATTCTGAGTGA
GCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGTTCCTTGCGCC
GGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAAGAATGGGTGG
GCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGGTGGTGGATCG
TCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATCAAAAGCTCGA
AGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGCAGGGGTGACG
TTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAATCGTGGTGTC
GGCGACGGCGCTTCATTAG
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Coding sequence (CDS) from alignment at chr3:609825..610493-

>NO03G02010.1 ID=NO03G02010.1|Name=NO03G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr3:609825..610493- (Nannochloropsis oceanica)
ATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCACGAGCTCTTCC
TCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGGACCACCACCC
TCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATGTCACTCTACC
GCCGCACACATGATGAGTTCTGTACAAGCTGTCCCCAAAATGTTTGCCAC
AGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTGGCGGAAGGAA
ACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGGAAAAATTGTC
ACCATCAAGTGCTTCGAGAACAATCCCTTAGTCCGCACGATTCTGAGTGA
GCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGTTCCTTGCGCC
GGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAAGAATGGGTGG
GCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGGTGGTGGATCG
TCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATCAAAAGCTCGA
AGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGCAGGGGTGACG
TTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAATCGTGGTGTC
GGCGACGGCGCTTCATTAG
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Synonyms
Publications