NO03G01810, NO03G01810 (gene) Nannochloropsis oceanica

Overview
NameNO03G01810
Unique NameNO03G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1497
Alignment locationchr3:561880..563376 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:561880..563376 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO03G01810 vs. NCBI_GenBank
Match: EWM29647.1 (hypothetical protein Naga_100050g14 [Nannochloropsis gaditana])

HSP 1 Score: 369.4 bits (947), Expect = 1.800e-98
Identity = 243/501 (48.50%), Postives = 298/501 (59.48%), Query Frame = 0 
Query:    8 TLLLFLLVALDIQAFYHLPNAPCRTASHTCRYFFGGRQQPKAEQDLVRASSSSNLPGTTLVLRHPTTGSQVYIVGCVHGSEASEEDVATVFRSHNPAAVVLELCQSRFESMQAEEAKYQAAIIEEDKQLKAARKIKLEIGASTAAAAGTDSPNINAAATTRV--ATGGPTGTLSHVAGGLAEWGRNLHTFSKQHGPMQTVLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCEFRTSVELALEGKAGIVLGDQDLNITLSRFKEGIWQWG-------TRGE-XXXXXXXXXXXXALREFASIRNALLGPSDLPRTQRVNVLRLLFTQERYIREVVKVLVPVGLVVLVALRAVETMGDAAIASLNQVLPSLPSSSAVDFISSLILSTFPTGDAXXXXXXXXXXXXXXXXXXSLLDAEWVSNLSWGGMNAFMLLYFVAINRYILVERDLFLADSIAEASLKGVYKGGKIAAVVGLLHGNGVARHLREKHGFELLDRP 499
            +LL  +L+  + +AF+H P A     + T   FFGG +QP  ++      S+  LPGTTLVL HP+TGSQVYIVGCVHGSEASEEDV+TVFR H+PAAVVLELC +RFE MQAEEAKY AA+   +++  A    K E   +T  +    S  + A+ ++    A G  + TL  +  GL E G  L TFSKQHG MQT+LI                                  SCEFRTSVELA   KA +VLGDQDL +TL RFK+GIW  G         G+             A+ E  S R+ALLGP+DLPRT RV+VLRLLFT+ERY+REV  VLVPVGLVVL ALRA+E  GD  +AS  Q+LPS   +S  +   S+ L +   G                     +L A+ ++N+ W  +NA ML YFVAINRYILVERD FLADSIA A+     KG  +AAVVGLLHGNG+ARHLRE+HGF L DRP
Sbjct:   10 SLLSLVLLLSNTRAFFHCPVA--LRPALTRLSFFGGSRQPHGQER--GPPSAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVA----KTETRGTTPQSTHGGSGGVKASPSSHPVDAWGEASRTLGRLREGLTEVGSTLQTFSKQHGLMQTLLI-----ALLSSSAEVQRVLSSCSSRAAGLPRRRRGSCEFRTSVELAQAAKATVVLGDQDLVVTLGRFKQGIWPGGGPRLEEVRAGQGGREERPSNMGRRAMMELTSFRDALLGPADLPRTCRVDVLRLLFTEERYLREVATVLVPVGLVVLGALRAMEAAGDTVLASAAQILPS-SLTSLGELAPSIPLFSAGVG------------VGAGVGLEGVLGADVLANIGWAALNASMLCYFVAINRYILVERDAFLADSIARAAATKETKGRVVAAVVGLLHGNGIARHLRERHGFVLRDRP 484
[Close]
BLAST of NO03G01810 vs. NCBI_GenBank
Match: CBJ28745.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.2 bits (165), Expect = 8.400e-8
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0 
Query:   58 SSSNLPGTTLVLRHPTTGSQVYIVGCVHGSEASEEDVATVFRSHNPAAVVLELCQSRFESMQAEEAK 125
            S  N+P T+LVLR   TG  +Y+VGC+HGS AS  DV  V     P AVVLELC+SR ++++ +  K
Sbjct:   98 SLQNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEK 164
[Close]
BLAST of NO03G01810 vs. NCBI_GenBank
Match: XP_019871227.1 (PREDICTED: LOW QUALITY PROTEIN: traB domain-containing protein-like [Aethina tumida] >XP_019879854.1 PREDICTED: traB domain-containing protein-like [Aethina tumida])

HSP 1 Score: 68.2 bits (165), Expect = 8.400e-8
Identity = 34/84 (40.48%), Postives = 56/84 (66.67%), Query Frame = 0 
Query:   60 SNLPGTTLVLRHPTTGSQVYIVGCVHGSEASEEDVATVFRSHNPAAVVLELCQSRFESMQAEEAKYQAAIIEEDKQLKAARKIK 144
            +NLP T  +L HPT+G++VY+VG  H S+ S+EDV+ V ++  P  V+LELC+SR   +  +E    A ++EE K + +A+ ++
Sbjct:   52 NNLPPTVTLLTHPTSGAKVYLVGTAHFSKESQEDVSLVIQTVKPNVVILELCKSRTNILSLDE----ATVLEEAKNIDSAKILR 131
The following BLAST results are available for this feature:
BLAST of NO03G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29647.11.800e-9848.50hypothetical protein Naga_100050g14 [Nannochlorops... [more]
CBJ28745.18.400e-849.25conserved unknown protein [Ectocarpus siliculosus][more]
XP_019871227.18.400e-840.48PREDICTED: LOW QUALITY PROTEIN: traB domain-contai... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005720NSK005720Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01810.1NO03G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571880gene_1366Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g14gene1006Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01810.1NO03G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01810 ID=NO03G01810|Name=NO03G01810|organism=Nannochloropsis oceanica|type=gene|length=1497bp
ATGTTGCGGTCCCTATTCGGTACCCTCCTCCTCTTCCTCCTCGTTGCCCT
TGATATCCAAGCCTTTTACCATCTTCCCAACGCGCCGTGTCGCACCGCCA
GCCACACCTGTCGCTACTTTTTTGGCGGCCGGCAACAACCCAAAGCAGAA
CAAGACCTCGTCCGCGCTTCTTCATCCTCAAACCTCCCTGGAACCACCCT
CGTGCTCCGCCATCCCACCACAGGCTCGCAAGTCTACATTGTGGGGTGCG
TGCACGGATCGGAGGCATCGGAAGAGGACGTCGCCACGGTCTTCCGTTCG
CACAACCCGGCGGCGGTGGTACTGGAGTTGTGTCAGTCCCGCTTTGAGAG
TATGCAAGCGGAAGAAGCCAAATATCAAGCCGCGATCATCGAAGAAGACA
AACAACTGAAAGCTGCAAGGAAAATAAAGTTAGAAATTGGTGCTTCCACC
GCCGCCGCGGCAGGCACAGACTCGCCAAATATAAATGCAGCAGCAACGAC
GAGGGTAGCGACGGGAGGGCCTACAGGGACCTTGAGCCACGTCGCGGGCG
GTCTCGCCGAATGGGGCCGCAACCTCCACACCTTCTCAAAACAACACGGA
CCGATGCAAACTGTCCTTATTGCTCTCCTCTCCTCCTCCGCCGAAGTCCA
ACGGGTCCTCACCACCTCCAGCAGCAGCAGCAGCACCAGCAGCAGTCGTC
GTCGTCGTCGTCGTCGTCGTGCGTCGTGTGAGTTCCGGACTTCCGTCGAG
CTAGCACTGGAAGGTAAAGCAGGAATAGTCCTGGGCGATCAAGACCTAAA
CATAACACTCAGTAGATTTAAGGAGGGGATTTGGCAATGGGGCACACGTG
GAGAGGAGGAGGAAGAAAAAAGACGAGGAGGAGGACAGCAGGCCCTGAGG
GAGTTCGCGTCTATCCGCAATGCGCTTTTGGGGCCTTCGGATTTACCGCG
CACACAACGGGTGAATGTCTTGAGACTATTGTTTACGCAAGAGAGGTACA
TTAGAGAAGTTGTCAAGGTGTTGGTGCCTGTAGGGTTAGTGGTGCTTGTG
GCCTTGCGCGCTGTGGAGACGATGGGGGATGCGGCGATCGCCTCTTTGAA
TCAAGTGTTGCCTTCCCTGCCCTCCTCCTCAGCCGTAGATTTTATCTCTT
CACTTATTTTGTCTACTTTTCCGACTGGTGACGCTGCTGTAACCACAATT
ACTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCGCCGTCGCTGCTTGA
TGCTGAATGGGTATCTAATTTGAGTTGGGGTGGGATGAATGCTTTTATGC
TTCTTTATTTCGTGGCCATTAATAGGTATATATTGGTTGAGCGTGATTTG
TTTCTTGCAGATTCGATTGCGGAGGCGTCGTTAAAGGGTGTGTACAAGGG
AGGAAAGATAGCGGCGGTGGTTGGGTTGTTGCATGGCAATGGGGTGGCGA
GGCATCTGAGGGAAAAGCATGGCTTTGAGTTGCTTGATCGGCCTTAA
back to top

protein sequence of NO03G01810.1

>NO03G01810.1-protein ID=NO03G01810.1-protein|Name=NO03G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MLRSLFGTLLLFLLVALDIQAFYHLPNAPCRTASHTCRYFFGGRQQPKAE
QDLVRASSSSNLPGTTLVLRHPTTGSQVYIVGCVHGSEASEEDVATVFRS
HNPAAVVLELCQSRFESMQAEEAKYQAAIIEEDKQLKAARKIKLEIGAST
AAAAGTDSPNINAAATTRVATGGPTGTLSHVAGGLAEWGRNLHTFSKQHG
PMQTVLIALLSSSAEVQRVLTTSSSSSSTSSSRRRRRRRRASCEFRTSVE
LALEGKAGIVLGDQDLNITLSRFKEGIWQWGTRGEEEEEKRRGGGQQALR
EFASIRNALLGPSDLPRTQRVNVLRLLFTQERYIREVVKVLVPVGLVVLV
ALRAVETMGDAAIASLNQVLPSLPSSSAVDFISSLILSTFPTGDAAVTTI
TAAAAAAATAAAPSLLDAEWVSNLSWGGMNAFMLLYFVAINRYILVERDL
FLADSIAEASLKGVYKGGKIAAVVGLLHGNGVARHLREKHGFELLDRP*
back to top
Synonyms
Publications