NO03G01810.1, NO03G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01810.1
Unique NameNO03G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1497
Alignment locationchr3:561880..563376 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:561880..563376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01810.1 vs.
Match: EWM29647.1 (hypothetical protein Naga_100050g14 [Nannochloropsis gaditana])

HSP 1 Score: 409.8 bits (1052), Expect = 1.200e-110
Identity = 267/501 (53.29%), Postives = 328/501 (65.47%), Query Frame = 0 
Query:    8 TLLLFLLVALDIQAFYHLPNAPCRTASHTCRYFFGGRQQPKAEQDLVRASSSSNLPGTTLVLRHPTTGSQVYIVGCVHGSEASEEDVATVFRSHNPAAVVLELCQSRFESMQAEEAKYQAAIIEEDKQLKAARKIKLEIGASTAAAAGTDSPNINAAATTRV--ATGGPTGTLSHVAGGLAEWGRNLHTFSKQHGPMQTVLIALLSSSAEVQRVLTTSSSSSSTSSSRRRRRRRRASCEFRTSVELALEGKAGIVLGDQDLNITLSRFKEGIWQWGTRGEEEEEKRRGG--------GQQALREFASIRNALLGPSDLPRTQRVNVLRLLFTQERYIREVVKVLVPVGLVVLVALRAVETMGDAAIASLNQVLPSLPSSSAVDFISSLILSTFPTGDAAVTTITAAAAAAATAAAPSLLDAEWVSNLSWGGMNAFMLLYFVAINRYILVERDLFLADSIAEASLKGVYKGGKIAAVVGLLHGNGVARHLREKHGFELLDRP 499
            +LL  +L+  + +AF+H P A  R A  T   FFGG +QP  ++      S+  LPGTTLVL HP+TGSQVYIVGCVHGSEASEEDV+TVFR H+PAAVVLELC +RFE MQAEEAKY AA+   +++  A    K E   +T  +    S  + A+ ++    A G  + TL  +  GL E G  L TFSKQHG MQT+LIALLSSSAEVQRVL++ SS ++        RRRR SCEFRTSVELA   KA +VLGDQDL +TL RFK+GIW  G    EE    +GG        G++A+ E  S R+ALLGP+DLPRT RV+VLRLLFT+ERY+REV  VLVPVGLVVL ALRA+E  GD  +AS  Q+LPS              L++      ++   +A     A      +L A+ ++N+ W  +NA ML YFVAINRYILVERD FLADSIA A+     KG  +AAVVGLLHGNG+ARHLRE+HGF L DRP
Sbjct:   10 SLLSLVLLLSNTRAFFHCPVA-LRPAL-TRLSFFGGSRQPHGQER--GPPSAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVA----KTETRGTTPQSTHGGSGGVKASPSSHPVDAWGEASRTLGRLREGLTEVGSTLQTFSKQHGLMQTLLIALLSSSAEVQRVLSSCSSRAAGLP-----RRRRGSCEFRTSVELAQAAKATVVLGDQDLVVTLGRFKQGIWPGGGPRLEEVRAGQGGREERPSNMGRRAMMELTSFRDALLGPADLPRTCRVDVLRLLFTEERYLREVATVLVPVGLVVLGALRAMEAAGDTVLASAAQILPS-------------SLTSLGELAPSIPLFSAGVGVGAGVGLEGVLGADVLANIGWAALNASMLCYFVAINRYILVERDAFLADSIARAAATKETKGRVVAAVVGLLHGNGIARHLRERHGFVLRDRP 484
The following BLAST results are available for this feature:
BLAST of NO03G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29647.11.200e-11053.29hypothetical protein Naga_100050g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01810NO03G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01810.1NO03G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01810.1.cds1NO03G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01810.1 ID=NO03G01810.1|Name=NO03G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
ATGTTGCGGTCCCTATTCGGTACCCTCCTCCTCTTCCTCCTCGTTGCCCT
TGATATCCAAGCCTTTTACCATCTTCCCAACGCGCCGTGTCGCACCGCCA
GCCACACCTGTCGCTACTTTTTTGGCGGCCGGCAACAACCCAAAGCAGAA
CAAGACCTCGTCCGCGCTTCTTCATCCTCAAACCTCCCTGGAACCACCCT
CGTGCTCCGCCATCCCACCACAGGCTCGCAAGTCTACATTGTGGGGTGCG
TGCACGGATCGGAGGCATCGGAAGAGGACGTCGCCACGGTCTTCCGTTCG
CACAACCCGGCGGCGGTGGTACTGGAGTTGTGTCAGTCCCGCTTTGAGAG
TATGCAAGCGGAAGAAGCCAAATATCAAGCCGCGATCATCGAAGAAGACA
AACAACTGAAAGCTGCAAGGAAAATAAAGTTAGAAATTGGTGCTTCCACC
GCCGCCGCGGCAGGCACAGACTCGCCAAATATAAATGCAGCAGCAACGAC
GAGGGTAGCGACGGGAGGGCCTACAGGGACCTTGAGCCACGTCGCGGGCG
GTCTCGCCGAATGGGGCCGCAACCTCCACACCTTCTCAAAACAACACGGA
CCGATGCAAACTGTCCTTATTGCTCTCCTCTCCTCCTCCGCCGAAGTCCA
ACGGGTCCTCACCACCTCCAGCAGCAGCAGCAGCACCAGCAGCAGTCGTC
GTCGTCGTCGTCGTCGTCGTGCGTCGTGTGAGTTCCGGACTTCCGTCGAG
CTAGCACTGGAAGGTAAAGCAGGAATAGTCCTGGGCGATCAAGACCTAAA
CATAACACTCAGTAGATTTAAGGAGGGGATTTGGCAATGGGGCACACGTG
GAGAGGAGGAGGAAGAAAAAAGACGAGGAGGAGGACAGCAGGCCCTGAGG
GAGTTCGCGTCTATCCGCAATGCGCTTTTGGGGCCTTCGGATTTACCGCG
CACACAACGGGTGAATGTCTTGAGACTATTGTTTACGCAAGAGAGGTACA
TTAGAGAAGTTGTCAAGGTGTTGGTGCCTGTAGGGTTAGTGGTGCTTGTG
GCCTTGCGCGCTGTGGAGACGATGGGGGATGCGGCGATCGCCTCTTTGAA
TCAAGTGTTGCCTTCCCTGCCCTCCTCCTCAGCCGTAGATTTTATCTCTT
CACTTATTTTGTCTACTTTTCCGACTGGTGACGCTGCTGTAACCACAATT
ACTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCGCCGTCGCTGCTTGA
TGCTGAATGGGTATCTAATTTGAGTTGGGGTGGGATGAATGCTTTTATGC
TTCTTTATTTCGTGGCCATTAATAGGTATATATTGGTTGAGCGTGATTTG
TTTCTTGCAGATTCGATTGCGGAGGCGTCGTTAAAGGGTGTGTACAAGGG
AGGAAAGATAGCGGCGGTGGTTGGGTTGTTGCATGGCAATGGGGTGGCGA
GGCATCTGAGGGAAAAGCATGGCTTTGAGTTGCTTGATCGGCCTTAA
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protein sequence of NO03G01810.1

>NO03G01810.1-protein ID=NO03G01810.1-protein|Name=NO03G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MLRSLFGTLLLFLLVALDIQAFYHLPNAPCRTASHTCRYFFGGRQQPKAE
QDLVRASSSSNLPGTTLVLRHPTTGSQVYIVGCVHGSEASEEDVATVFRS
HNPAAVVLELCQSRFESMQAEEAKYQAAIIEEDKQLKAARKIKLEIGAST
AAAAGTDSPNINAAATTRVATGGPTGTLSHVAGGLAEWGRNLHTFSKQHG
PMQTVLIALLSSSAEVQRVLTTSSSSSSTSSSRRRRRRRRASCEFRTSVE
LALEGKAGIVLGDQDLNITLSRFKEGIWQWGTRGEEEEEKRRGGGQQALR
EFASIRNALLGPSDLPRTQRVNVLRLLFTQERYIREVVKVLVPVGLVVLV
ALRAVETMGDAAIASLNQVLPSLPSSSAVDFISSLILSTFPTGDAAVTTI
TAAAAAAATAAAPSLLDAEWVSNLSWGGMNAFMLLYFVAINRYILVERDL
FLADSIAEASLKGVYKGGKIAAVVGLLHGNGVARHLREKHGFELLDRP*
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mRNA from alignment at chr3:561880..563376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01810.1 ID=NO03G01810.1|Name=NO03G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at chr3:561880..563376+ (Nannochloropsis oceanica)
ATGTTGCGGTCCCTATTCGGTACCCTCCTCCTCTTCCTCCTCGTTGCCCT
TGATATCCAAGCCTTTTACCATCTTCCCAACGCGCCGTGTCGCACCGCCA
GCCACACCTGTCGCTACTTTTTTGGCGGCCGGCAACAACCCAAAGCAGAA
CAAGACCTCGTCCGCGCTTCTTCATCCTCAAACCTCCCTGGAACCACCCT
CGTGCTCCGCCATCCCACCACAGGCTCGCAAGTCTACATTGTGGGGTGCG
TGCACGGATCGGAGGCATCGGAAGAGGACGTCGCCACGGTCTTCCGTTCG
CACAACCCGGCGGCGGTGGTACTGGAGTTGTGTCAGTCCCGCTTTGAGAG
TATGCAAGCGGAAGAAGCCAAATATCAAGCCGCGATCATCGAAGAAGACA
AACAACTGAAAGCTGCAAGGAAAATAAAGTTAGAAATTGGTGCTTCCACC
GCCGCCGCGGCAGGCACAGACTCGCCAAATATAAATGCAGCAGCAACGAC
GAGGGTAGCGACGGGAGGGCCTACAGGGACCTTGAGCCACGTCGCGGGCG
GTCTCGCCGAATGGGGCCGCAACCTCCACACCTTCTCAAAACAACACGGA
CCGATGCAAACTGTCCTTATTGCTCTCCTCTCCTCCTCCGCCGAAGTCCA
ACGGGTCCTCACCACCTCCAGCAGCAGCAGCAGCACCAGCAGCAGTCGTC
GTCGTCGTCGTCGTCGTCGTGCGTCGTGTGAGTTCCGGACTTCCGTCGAG
CTAGCACTGGAAGGTAAAGCAGGAATAGTCCTGGGCGATCAAGACCTAAA
CATAACACTCAGTAGATTTAAGGAGGGGATTTGGCAATGGGGCACACGTG
GAGAGGAGGAGGAAGAAAAAAGACGAGGAGGAGGACAGCAGGCCCTGAGG
GAGTTCGCGTCTATCCGCAATGCGCTTTTGGGGCCTTCGGATTTACCGCG
CACACAACGGGTGAATGTCTTGAGACTATTGTTTACGCAAGAGAGGTACA
TTAGAGAAGTTGTCAAGGTGTTGGTGCCTGTAGGGTTAGTGGTGCTTGTG
GCCTTGCGCGCTGTGGAGACGATGGGGGATGCGGCGATCGCCTCTTTGAA
TCAAGTGTTGCCTTCCCTGCCCTCCTCCTCAGCCGTAGATTTTATCTCTT
CACTTATTTTGTCTACTTTTCCGACTGGTGACGCTGCTGTAACCACAATT
ACTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCGCCGTCGCTGCTTGA
TGCTGAATGGGTATCTAATTTGAGTTGGGGTGGGATGAATGCTTTTATGC
TTCTTTATTTCGTGGCCATTAATAGGTATATATTGGTTGAGCGTGATTTG
TTTCTTGCAGATTCGATTGCGGAGGCGTCGTTAAAGGGTGTGTACAAGGG
AGGAAAGATAGCGGCGGTGGTTGGGTTGTTGCATGGCAATGGGGTGGCGA
GGCATCTGAGGGAAAAGCATGGCTTTGAGTTGCTTGATCGGCCTTAA
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Coding sequence (CDS) from alignment at chr3:561880..563376+

>NO03G01810.1 ID=NO03G01810.1|Name=NO03G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr3:561880..563376+ (Nannochloropsis oceanica)
ATGTTGCGGTCCCTATTCGGTACCCTCCTCCTCTTCCTCCTCGTTGCCCT
TGATATCCAAGCCTTTTACCATCTTCCCAACGCGCCGTGTCGCACCGCCA
GCCACACCTGTCGCTACTTTTTTGGCGGCCGGCAACAACCCAAAGCAGAA
CAAGACCTCGTCCGCGCTTCTTCATCCTCAAACCTCCCTGGAACCACCCT
CGTGCTCCGCCATCCCACCACAGGCTCGCAAGTCTACATTGTGGGGTGCG
TGCACGGATCGGAGGCATCGGAAGAGGACGTCGCCACGGTCTTCCGTTCG
CACAACCCGGCGGCGGTGGTACTGGAGTTGTGTCAGTCCCGCTTTGAGAG
TATGCAAGCGGAAGAAGCCAAATATCAAGCCGCGATCATCGAAGAAGACA
AACAACTGAAAGCTGCAAGGAAAATAAAGTTAGAAATTGGTGCTTCCACC
GCCGCCGCGGCAGGCACAGACTCGCCAAATATAAATGCAGCAGCAACGAC
GAGGGTAGCGACGGGAGGGCCTACAGGGACCTTGAGCCACGTCGCGGGCG
GTCTCGCCGAATGGGGCCGCAACCTCCACACCTTCTCAAAACAACACGGA
CCGATGCAAACTGTCCTTATTGCTCTCCTCTCCTCCTCCGCCGAAGTCCA
ACGGGTCCTCACCACCTCCAGCAGCAGCAGCAGCACCAGCAGCAGTCGTC
GTCGTCGTCGTCGTCGTCGTGCGTCGTGTGAGTTCCGGACTTCCGTCGAG
CTAGCACTGGAAGGTAAAGCAGGAATAGTCCTGGGCGATCAAGACCTAAA
CATAACACTCAGTAGATTTAAGGAGGGGATTTGGCAATGGGGCACACGTG
GAGAGGAGGAGGAAGAAAAAAGACGAGGAGGAGGACAGCAGGCCCTGAGG
GAGTTCGCGTCTATCCGCAATGCGCTTTTGGGGCCTTCGGATTTACCGCG
CACACAACGGGTGAATGTCTTGAGACTATTGTTTACGCAAGAGAGGTACA
TTAGAGAAGTTGTCAAGGTGTTGGTGCCTGTAGGGTTAGTGGTGCTTGTG
GCCTTGCGCGCTGTGGAGACGATGGGGGATGCGGCGATCGCCTCTTTGAA
TCAAGTGTTGCCTTCCCTGCCCTCCTCCTCAGCCGTAGATTTTATCTCTT
CACTTATTTTGTCTACTTTTCCGACTGGTGACGCTGCTGTAACCACAATT
ACTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCGCCGTCGCTGCTTGA
TGCTGAATGGGTATCTAATTTGAGTTGGGGTGGGATGAATGCTTTTATGC
TTCTTTATTTCGTGGCCATTAATAGGTATATATTGGTTGAGCGTGATTTG
TTTCTTGCAGATTCGATTGCGGAGGCGTCGTTAAAGGGTGTGTACAAGGG
AGGAAAGATAGCGGCGGTGGTTGGGTTGTTGCATGGCAATGGGGTGGCGA
GGCATCTGAGGGAAAAGCATGGCTTTGAGTTGCTTGATCGGCCTTAA
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Synonyms
Publications