NO03G01650, NO03G01650 (gene) Nannochloropsis oceanica

Overview
NameNO03G01650
Unique NameNO03G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length860
Alignment locationchr3:519259..520118 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:519259..520118 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G01650 vs. NCBI_GenBank
Match: EWM29540.1 (hypothetical protein Naga_100006g109 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 3.600e-17
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:    1 MRTVGAIVIRSARSALRTSSGLGEGVGKRMSKGPGGPSLAGPSRTASGMPSASRGSSRMQRQYEFGMALRRQAMPACALMLDAAAGPEARVAALYMGGGLDDDDGT 107
            MRT+G++V+R AR+A R S   G G       G  GP +   +R    +PSA R + R+QRQYEFGMALR+QA+PA  +MLDAA G E R+AAL+MGGGLDDDDGT
Sbjct:   41 MRTMGSVVMRGARNARRASQASGSGGRTHNVVGFAGPRIT-LTRRGVTIPSA-RANRRLQRQYEFGMALRQQALPASVVMLDAATGVETRIAALFMGGGLDDDDGT 144
The following BLAST results are available for this feature:
BLAST of NO03G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29540.13.600e-1755.66hypothetical protein Naga_100006g109 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005738NSK005738Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01650.2NO03G01650.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G01650.1NO03G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100006g109gene1020Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01650.2NO03G01650.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G01650.1NO03G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01650 ID=NO03G01650|Name=NO03G01650|organism=Nannochloropsis oceanica|type=gene|length=860bp
AGACCACCAACACAGAGCGCCGGTCACACAACGATGAGGACCGTTGGGGC
CATTGTTATACGCAGTGCTCGGAGCGCCTTGAGAACAAGCAGCGGCCTAG
GTGAAGGCGTGGGCAAGAGAATGAGTAAAGGCCCGGGGGGGCCATCACTC
GCAGGACCCTCTCGGACAGCCTCTGGCATGCCTTCCGCTTCACGGGGCAG
CAGCCGCATGCAACGTCAGTACGAGTTCGGAATGGCCTTGCGACGGCAAG
CAATGCCGGCGTGCGCTTTGATGCTGGACGCGGCAGCAGGGCCAGAGGCC
CGGGTGGCAGCGCTTTACATGGGGGGAGGACTCGATGACGACGATGGAAC
gtgagtgcccgtgagtatgtgttgatgggtgtgaagagttgagagaaagg
ggccgacatttctttttcattgcctcataaatttatctgtcctcttctcc
ctattaccccttcgttcctattcctcgccacaaatagTTAATTAGCCTTC
CTTCCTTCCTTTCTCCATCACCTCCATCCCCTCCGCGCGCGCAGATAATG
AAAGTTTGGCTGCCTTTCAGCCCAATGTCTCCTTTATTTCCTCTTCTTCT
TCCGTCTTCACTTCCAATACCGCTGGGTTTTTTTTGTCTTGTTCAAGAGC
AACCTACTATGGCAAGCAGGAGCATCGAAGGGAGGAGGGAAGGGAAGGAA
GGATGGAAGAAGGGAGTGAGGGAGGGGAGGACGGCTCTCTTTCGTTGTAA
ATACAGGACAAAGTAAAGCTTGAGTCATAGTATGTCGCTAGAGCAGAAGA
AAATAGAAAGGAAAGGGGGATAATCCCCATAAAGAAGCAGCCTCTTTACG
CCTTCAGGTG
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protein sequence of NO03G01650.2

>NO03G01650.2-protein ID=NO03G01650.2-protein|Name=NO03G01650.2|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MRTVGAIVIRSARSALRTSSGLGEGVGKRMSKGPGGPSLAGPSRTASGMP
SASRGSSRMQRQYEFGMALRRQAMPACALMLDAAAGPEARVAALYMGGGL
DDDDGT*
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protein sequence of NO03G01650.1

>NO03G01650.1-protein ID=NO03G01650.1-protein|Name=NO03G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MRTVGAIVIRSARSALRTSSGLGEGVGKRMSKGPGGPSLAGPSRTASGMP
SASRGSSRMQRQYEFGMALRRQAMPACALMLDAAAGPEARVAALYMGGGL
DDDDGT*
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Synonyms
Publications