NO03G01650.2, NO03G01650.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01650.2
Unique NameNO03G01650.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr3:519259..520118 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:519259..520118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G01650.2 vs.
Match: EWM29540.1 (hypothetical protein Naga_100006g109 [Nannochloropsis gaditana])

HSP 1 Score: 96.7 bits (239), Expect = 4.700e-17
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:    1 MRTVGAIVIRSARSALRTSSGLGEGVGKRMSKGPGGPSLAGPSRTASGMPSASRGSSRMQRQYEFGMALRRQAMPACALMLDAAAGPEARVAALYMGGGLDDDDGT 107
            MRT+G++V+R AR+A R S   G G       G  GP +    R  + +PSA R + R+QRQYEFGMALR+QA+PA  +MLDAA G E R+AAL+MGGGLDDDDGT
Sbjct:   41 MRTMGSVVMRGARNARRASQASGSGGRTHNVVGFAGPRITLTRRGVT-IPSA-RANRRLQRQYEFGMALRQQALPASVVMLDAATGVETRIAALFMGGGLDDDDGT 144
The following BLAST results are available for this feature:
BLAST of NO03G01650.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29540.14.700e-1755.66hypothetical protein Naga_100006g109 [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01650NO03G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01650.2NO03G01650.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01650.2.cds1NO03G01650.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01650.2.cds2NO03G01650.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01650.2 ID=NO03G01650.2|Name=NO03G01650.2|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
AGACCACCAACACAGAGCGCCGGTCACACAACGATGAGGACCGTTGGGGC
CATTGTTATACGCAGTGCTCGGAGCGCCTTGAGAACAAGCAGCGGCCTAG
GTGAAGGCGTGGGCAAGAGAATGAGTAAAGGCCCGGGGGGGCCATCACTC
GCAGGACCCTCTCGGACAGCCTCTGGCATGCCTTCCGCTTCACGGGGCAG
CAGCCGCATGCAACGTCAGTACGAGTTCGGAATGGCCTTGCGACGGCAAG
CAATGCCGGCGTGCGCTTTGATGCTGGACGCGGCAGCAGGGCCAGAGGCC
CGGGTGGCAGCGCTTTACATGGGGGGAGGACTCGATGACGACGATGGAAC
ATAATGAAAGTTTGGCTGCCTTTCAGCCCAATGTCTCCTTTATTTCCTCT
TCTTCTTCCGTCTTCACTTCCAATACCGCTGGGTTTTTTTTGTCTTGTTC
AAGAGCAACCTACTATGGCAAGCAGGAGCATCGAAGGGAGGAGGGAAGGG
AAGGAAGGATGGAAGAAGGGAGTGAGGGAGGGGAGGACGGCTCTCTTTCG
TTGTAAATACAGGACAAAGTAAAGCTTGAGTCATAGTATGTCGCTAGAGC
AGAAGAAAATAGAAAGGAAAGGGGGATAATCCCCATAAAGAAGCAGCCTC
TTTACGCCTTCAGGTG
back to top

protein sequence of NO03G01650.2

>NO03G01650.2-protein ID=NO03G01650.2-protein|Name=NO03G01650.2|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MRTVGAIVIRSARSALRTSSGLGEGVGKRMSKGPGGPSLAGPSRTASGMP
SASRGSSRMQRQYEFGMALRRQAMPACALMLDAAAGPEARVAALYMGGGL
DDDDGT*
back to top

mRNA from alignment at chr3:519259..520118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01650.2 ID=NO03G01650.2|Name=NO03G01650.2|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at chr3:519259..520118- (Nannochloropsis oceanica)
AGACCACCAACACAGAGCGCCGGTCACACAACGATGAGGACCGTTGGGGC
CATTGTTATACGCAGTGCTCGGAGCGCCTTGAGAACAAGCAGCGGCCTAG
GTGAAGGCGTGGGCAAGAGAATGAGTAAAGGCCCGGGGGGGCCATCACTC
GCAGGACCCTCTCGGACAGCCTCTGGCATGCCTTCCGCTTCACGGGGCAG
CAGCCGCATGCAACGTCAGTACGAGTTCGGAATGGCCTTGCGACGGCAAG
CAATGCCGGCGTGCGCTTTGATGCTGGACGCGGCAGCAGGGCCAGAGGCC
CGGGTGGCAGCGCTTTACATGGGGGGAGGACTCGATGACGACGATGGAAC
GTGAGTGCCCGTGAGTATGTGTTGATGGGTGTGAAGAGTTGAGAGAAAGG
GGCCGACATTTCTTTTTCATTGCCTCATAAATTTATCTGTCCTCTTCTCC
CTATTACCCCTTCGTTCCTATTCCTCGCCACAAATAGTTAATTAGCCTTC
CTTCCTTCCTTTCTCCATCACCTCCATCCCCTCCGCGCGCGCAGATAATG
AAAGTTTGGCTGCCTTTCAGCCCAATGTCTCCTTTATTTCCTCTTCTTCT
TCCGTCTTCACTTCCAATACCGCTGGGTTTTTTTTGTCTTGTTCAAGAGC
AACCTACTATGGCAAGCAGGAGCATCGAAGGGAGGAGGGAAGGGAAGGAA
GGATGGAAGAAGGGAGTGAGGGAGGGGAGGACGGCTCTCTTTCGTTGTAA
ATACAGGACAAAGTAAAGCTTGAGTCATAGTATGTCGCTAGAGCAGAAGA
AAATAGAAAGGAAAGGGGGATAATCCCCATAAAGAAGCAGCCTCTTTACG
CCTTCAGGTG
back to top

Coding sequence (CDS) from alignment at chr3:519259..520118-

>NO03G01650.2 ID=NO03G01650.2|Name=NO03G01650.2|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at chr3:519259..520118- (Nannochloropsis oceanica)
ATGAGGACCGTTGGGGCCATTGTTATACGCAGTGCTCGGAGCGCCTTGAG
AACAAGCAGCGGCCTAGGTGAAGGCGTGGGCAAGAGAATGAGTAAAGGCC
CGGGGGGGCCATCACTCGCAGGACCCTCTCGGACAGCCTCTGGCATGCCT
TCCGCTTCACGGGGCAGCAGCCGCATGCAACGTCAGTACGAGTTCGGAAT
GGCCTTGCGACGGCAAGCAATGCCGGCGTGCGCTTTGATGCTGGACGCGG
CAGCAGGGCCAGAGGCCCGGGTGGCAGCGCTTTACATGGGGGGAGGACTC
GATGACGACGATGGAACATAA
back to top
Synonyms
Publications