NO03G01250, NO03G01250 (gene) Nannochloropsis oceanica

Overview
NameNO03G01250
Unique NameNO03G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2154
Alignment locationchr3:384513..386666 +

Link to JBrowse

Properties
Property NameValue
DescriptionProteasome, subunit alpha/beta
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:384513..386666 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0019774proteasome core complex, beta-subunit complex
GO:0005839proteasome core complex
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR033811Proteasome_beta_3
IPR001353Proteasome_sua/b
Homology
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BLAST of NO03G01250 vs. NCBI_GenBank
Match: EWM29522.1 (Proteasome, subunit alpha/beta [Nannochloropsis gaditana])

HSP 1 Score: 222.2 bits (565), Expect = 1.700e-54
Identity = 123/178 (69.10%), Postives = 144/178 (80.90%), Query Frame = 0 
Query:   38 SRARLSFFGLDTISVVL--FCIVLALHLR--SVNAVKLQGGSALALAGKGCVVLAMDQRVGTSGQLLLGGDGGGEENDAEGGTSGSQRVLKVNGRLLLGMVGYDSMARAFFDLLQAELYLRSMRLQHHALGETSTAISPKALSLLVSHLLYFKFRGSGTAPIIAGLDQDGTSVLCTQG 212
            S AR S + L  +SVV    CI+  L  R   VNAVKLQGGSALALAGK C VLAMD+RVGTS QLL+GG+    E++ EG   GSQR+LKVNGRLLLGMVGYD+MA AFFD+L+AEL+LRSMRL+ HALGE +T I+PKALSLLVSH+LY++FRGSGTAPI+AGL+ DGT VLCTQG
Sbjct:    8 SSARPS-YPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQG 184
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BLAST of NO03G01250 vs. NCBI_GenBank
Match: EWM29521.1 (Proteasome, subunit alpha/beta [Nannochloropsis gaditana])

HSP 1 Score: 220.3 bits (560), Expect = 6.400e-54
Identity = 122/177 (68.93%), Postives = 143/177 (80.79%), Query Frame = 0 
Query:   38 SRARLSFFGLDTISVVL--FCIVLALHLR--SVNAVKLQGGSALALAGKGCVVLAMDQRVGTSGQLLLGGDGGGEENDAEGGTSGSQRVLKVNGRLLLGMVGYDSMARAFFDLLQAELYLRSMRLQHHALGETSTAISPKALSLLVSHLLYFKFRGSGTAPIIAGLDQDGTSVLCTQ 211
            S AR S + L  +SVV    CI+  L  R   VNAVKLQGGSALALAGK C VLAMD+RVGTS QLL+GG+    E++ EG   GSQR+LKVNGRLLLGMVGYD+MA AFFD+L+AEL+LRSMRL+ HALGE +T I+PKALSLLVSH+LY++FRGSGTAPI+AGL+ DGT VLCTQ
Sbjct:    8 SSARPS-YPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQ 183
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BLAST of NO03G01250 vs. NCBI_GenBank
Match: CBN74723.1 (proteasome beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 88.2 bits (217), Expect = 3.800e-14
Identity = 62/150 (41.33%), Postives = 82/150 (54.67%), Query Frame = 0 
Query:   63 LRSVNAVKLQGGSALALAGKGCVVLAMDQRVGTSGQLLLGGDGGGEENDAEGGTSGSQRVLKVNGRLLLGMVGYDSMARAFFDLLQAELYLRSMRLQHHALGETSTAISPKALSLLVSHLLYFKFRGSG--TAPIIAGLDQDGTSVLCTQ 211
            L S N ++L GGS LA+AGKGCV LA+D+R G  GQL+               ++ ++RVLKVNG+LL G  G  +        L +E+ L+S       L E    I+P AL+ L+S LLY + RGS     PI+AGLD  G   LC Q
Sbjct:   13 LASSNPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLV---------------STEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKS-------LAEADRPIAPAALAGLLSTLLYSR-RGSPWFVEPIVAGLDPRGRPYLCGQ 139
The following BLAST results are available for this feature:
BLAST of NO03G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29522.11.700e-5469.10Proteasome, subunit alpha/beta [Nannochloropsis ga... [more]
EWM29521.16.400e-5468.93Proteasome, subunit alpha/beta [Nannochloropsis ga... [more]
CBN74723.13.800e-1441.33proteasome beta subunit [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005785NSK005785Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01250.1NO03G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G01250.2NO03G01250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571660gene_1301Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g59gene1067Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01250.1NO03G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G01250.2NO03G01250.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01250 ID=NO03G01250|Name=NO03G01250|organism=Nannochloropsis oceanica|type=gene|length=2154bp
GTGCCACTCCATCGCTCTGTCCTGGGAATGAGGTCGCGAATGTGGGTTAA
GGTTAGCAGGGCACGCATCAGTGGGATGTAAATGGAGGTTCCCCTTCGGG
AAAAGACCTTGTGAGGTGGGTGCATCCAGTGATGACACGAGTGGTTCCGT
ACCACAAAAAATACCCTGTGTGGGAAGCAGCACTCTGTGTGTGCAATGGA
CACTCGGGAGACATGCAAAGCAAGCCAGCAAAACACGCTCTACGCCGACA
AGGGTATATTTCTTTACTTTCAAAGTTGGTTCGAGTTATGTCTCCTCCAG
TTCTAGACCCGATTTATCAGTCCTCAGAGGCATAGGAGAGGTCTTCATGC
CCCCAAAAATGCCTTGCCCACGTCTATAACAGCCTCCGCTCGACCACAAA
CTGCGAACAACATCACACATGAAACAGGTAGAATCTATGACAGCCCCTTT
CTGCCGATCCCTGCATCTCGAAAGGACGGTCATGGAGCCATCAATACCCC
GTAGGAGCATCTTCACCCGCTGCCGACACTCAAGGGCAAGGCTTTCCTTT
TTTGGTCTAGACACGATCTCCGTCGTCCTGTTTTGCATCGTGCTAGCCTT
GCACCTCCGCAGCGTCAACGCAGTGAAGCTACAAGGTGGAAGTGCCTTGG
CTTTGGCAGGGAAGGGCTGCGTGGTGCTCGCCATGGATCAACGCGTGGGC
ACGAGgtgagaaggaaagcggcttgattggagaggtgggatacgcaggga
gtctgtcacctacaggctattcgggcctccttttttgaaataagaacggg
caaaatctccccctctttcatgcatacagTGGACAACTTTTGCTGGGTGG
GGATGGGGGCGGCGAAGAGAACGACGCGGAAGGCGGCACCAGCGGGAGCC
AGCGCGTGCTCAAGgtatgacatgggtgtccgtataggagtactggcggg
ctgaaacgaaattctctgcagaggttcgaagcttattccacgatttctac
gagaatgatacataatcacgctctcactcctcattttctcttctttttag
GTGAACGGCCGACTGCTTCTGGGCATGGTGGGATACGACTCTATGGCAAG
AGCCTTCTTCGATTTGCTTCAAGCTGAGCTGTACTTGCGGAGCATGCGCC
TGCAACATCATgtacgttgctctattacctctgtctcccatgctgtaacc
gttcctgttcttccatgctcacattcccctccatctcttcccatattcct
cctgtcccttcctcagGCACTAGGCGAGACCTCAACAGCTATTTCGCCCA
AGGCGCTCTCCCTTCTCGTCTCCCACCTCCTTTACTTTAAATTTCGGGGC
AGTGGCACCGCCCCGATCATTGCCGGGCTTGACCAGGATGGAACGTCGGT
GTTATGCACGCAGGGTGGGGAGAAGAAGACAAGGAGGGCAAGAAATGCAG
GGGATTTGGGGAGGATAGGAATGAGAGATGGGATGGATGCCTTAACTCCC
AAATAAATACGCGCATACACTCATGATACATACCTACCCTTGTCTCACGT
CTGTCCCTTCCCCATTCACTCCTCTTTGTCATTTGCACAGATTCCCTCGG
CGCGTATTCTTTCCAAGCTGATTTTGTGGCTTTGGGATCCTCGGCCAAAT
CGTTGCTAGGGGCATGCGAAgtacgttttggtgtcgagatagagagcata
attttcatctttgttgatgtactccatccacacgttttttctgaaccccc
cgctacttctaccctctgtaatttttccttgtcgagtacttcctccgctt
tctatctatcttctcgttcttctggttctaatcctcgtgttctccccccc
cccccacacacctacagGCTCTCTACCGTCCCAATTTGGAAGGGGAGGCC
CTGATGGAGCTTGCCTGCCGCTGTCTTAGGGCGGGGCTCGAGCGTGACTG
TGTGAGTGGGTACGGTATAGTGGTATACTTGGTCACAAAGCAGGGGGTGG
CACGCACACGGTTGCAAGGACGGATGGATTAGAGGGATTAGATTAGTTTT
ATAGGCGGATGTACAGAGAAATGATGATCAAAGCAACAAAACTGATTAGT
TGCTCAAGCGAAATGTTTGCAAGCAGGAGGGCGTCCTTGCTTGGCACATT
TACC
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protein sequence of NO03G01250.1

>NO03G01250.1-protein ID=NO03G01250.1-protein|Name=NO03G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MKQVESMTAPFCRSLHLERTVMEPSIPRRSIFTRCRHSRARLSFFGLDTI
SVVLFCIVLALHLRSVNAVKLQGGSALALAGKGCVVLAMDQRVGTSGQLL
LGGDGGGEENDAEGGTSGSQRVLKVNGRLLLGMVGYDSMARAFFDLLQAE
LYLRSMRLQHHALGETSTAISPKALSLLVSHLLYFKFRGSGTAPIIAGLD
QDGTSVLCTQDSLGAYSFQADFVALGSSAKSLLGACEALYRPNLEGEALM
ELACRCLRAGLERDCVSGYGIVVYLVTKQGVARTRLQGRMD*
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protein sequence of NO03G01250.2

>NO03G01250.2-protein ID=NO03G01250.2-protein|Name=NO03G01250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MKQVESMTAPFCRSLHLERTVMEPSIPRRSIFTRCRHSRARLSFFGLDTI
SVVLFCIVLALHLRSVNAVKLQGGSALALAGKGCVVLAMDQRVGTSGQLL
LGGDGGGEENDAEGGTSGSQRVLKVNGRLLLGMVGYDSMARAFFDLLQAE
LYLRSMRLQHHALGETSTAISPKALSLLVSHLLYFKFRGSGTAPIIAGLD
QDGTSVLCTQGGEKKTRRARNAGDLGRIGMRDGMDALTPK*
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Synonyms
Publications