NO03G01250.2, NO03G01250.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01250.2
Unique NameNO03G01250.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1592
Alignment locationchr3:384513..386666 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:384513..386666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01250.2 vs.
Match: EWM29522.1 (Proteasome, subunit alpha/beta [Nannochloropsis gaditana])

HSP 1 Score: 222.2 bits (565), Expect = 1.700e-54
Identity = 123/178 (69.10%), Postives = 144/178 (80.90%), Query Frame = 0 
Query:   38 SRARLSFFGLDTISVVL--FCIVLALHLRS--VNAVKLQGGSALALAGKGCVVLAMDQRVGTSGQLLLGGDGGGEENDAEGGTSGSQRVLKVNGRLLLGMVGYDSMARAFFDLLQAELYLRSMRLQHHALGETSTAISPKALSLLVSHLLYFKFRGSGTAPIIAGLDQDGTSVLCTQG 212
            S AR S+  L  +SVV    CI+  L  R   VNAVKLQGGSALALAGK C VLAMD+RVGTS QLL+GG+    E++ EG   GSQR+LKVNGRLLLGMVGYD+MA AFFD+L+AEL+LRSMRL+ HALGE +T I+PKALSLLVSH+LY++FRGSGTAPI+AGL+ DGT VLCTQG
Sbjct:    8 SSARPSY-PLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQG 184
The following BLAST results are available for this feature:
BLAST of NO03G01250.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29522.11.700e-5469.10Proteasome, subunit alpha/beta [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01250NO03G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01250.2NO03G01250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01250.2.cds1NO03G01250.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01250.2.cds2NO03G01250.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01250.2.cds3NO03G01250.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01250.2.cds4NO03G01250.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01250.2 ID=NO03G01250.2|Name=NO03G01250.2|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp
GTGCCACTCCATCGCTCTGTCCTGGGAATGAGGTCGCGAATGTGGGTTAA
GGTTAGCAGGGCACGCATCAGTGGGATGTAAATGGAGGTTCCCCTTCGGG
AAAAGACCTTGTGAGGTGGGTGCATCCAGTGATGACACGAGTGGTTCCGT
ACCACAAAAAATACCCTGTGTGGGAAGCAGCACTCTGTGTGTGCAATGGA
CACTCGGGAGACATGCAAAGCAAGCCAGCAAAACACGCTCTACGCCGACA
AGGGTATATTTCTTTACTTTCAAAGTTGGTTCGAGTTATGTCTCCTCCAG
TTCTAGACCCGATTTATCAGTCCTCAGAGGCATAGGAGAGGTCTTCATGC
CCCCAAAAATGCCTTGCCCACGTCTATAACAGCCTCCGCTCGACCACAAA
CTGCGAACAACATCACACATGAAACAGGTAGAATCTATGACAGCCCCTTT
CTGCCGATCCCTGCATCTCGAAAGGACGGTCATGGAGCCATCAATACCCC
GTAGGAGCATCTTCACCCGCTGCCGACACTCAAGGGCAAGGCTTTCCTTT
TTTGGTCTAGACACGATCTCCGTCGTCCTGTTTTGCATCGTGCTAGCCTT
GCACCTCCGCAGCGTCAACGCAGTGAAGCTACAAGGTGGAAGTGCCTTGG
CTTTGGCAGGGAAGGGCTGCGTGGTGCTCGCCATGGATCAACGCGTGGGC
ACGAGTGGACAACTTTTGCTGGGTGGGGATGGGGGCGGCGAAGAGAACGA
CGCGGAAGGCGGCACCAGCGGGAGCCAGCGCGTGCTCAAGGTGAACGGCC
GACTGCTTCTGGGCATGGTGGGATACGACTCTATGGCAAGAGCCTTCTTC
GATTTGCTTCAAGCTGAGCTGTACTTGCGGAGCATGCGCCTGCAACATCA
TGCACTAGGCGAGACCTCAACAGCTATTTCGCCCAAGGCGCTCTCCCTTC
TCGTCTCCCACCTCCTTTACTTTAAATTTCGGGGCAGTGGCACCGCCCCG
ATCATTGCCGGGCTTGACCAGGATGGAACGTCGGTGTTATGCACGCAGGG
TGGGGAGAAGAAGACAAGGAGGGCAAGAAATGCAGGGGATTTGGGGAGGA
TAGGAATGAGAGATGGGATGGATGCCTTAACTCCCAAATAAATACGCGCA
TACACTCATGATACATACCTACCCTTGTCTCACGTCTGTCCCTTCCCCAT
TCACTCCTCTTTGTCATTTGCACAGATTCCCTCGGCGCGTATTCTTTCCA
AGCTGATTTTGTGGCTTTGGGATCCTCGGCCAAATCGTTGCTAGGGGCAT
GCGAAGCTCTCTACCGTCCCAATTTGGAAGGGGAGGCCCTGATGGAGCTT
GCCTGCCGCTGTCTTAGGGCGGGGCTCGAGCGTGACTGTGTGAGTGGGTA
CGGTATAGTGGTATACTTGGTCACAAAGCAGGGGGTGGCACGCACACGGT
TGCAAGGACGGATGGATTAGAGGGATTAGATTAGTTTTATAGGCGGATGT
ACAGAGAAATGATGATCAAAGCAACAAAACTGATTAGTTGCTCAAGCGAA
ATGTTTGCAAGCAGGAGGGCGTCCTTGCTTGGCACATTTACC
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protein sequence of NO03G01250.2

>NO03G01250.2-protein ID=NO03G01250.2-protein|Name=NO03G01250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MKQVESMTAPFCRSLHLERTVMEPSIPRRSIFTRCRHSRARLSFFGLDTI
SVVLFCIVLALHLRSVNAVKLQGGSALALAGKGCVVLAMDQRVGTSGQLL
LGGDGGGEENDAEGGTSGSQRVLKVNGRLLLGMVGYDSMARAFFDLLQAE
LYLRSMRLQHHALGETSTAISPKALSLLVSHLLYFKFRGSGTAPIIAGLD
QDGTSVLCTQGGEKKTRRARNAGDLGRIGMRDGMDALTPK*
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mRNA from alignment at chr3:384513..386666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01250.2 ID=NO03G01250.2|Name=NO03G01250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at chr3:384513..386666+ (Nannochloropsis oceanica)
GTGCCACTCCATCGCTCTGTCCTGGGAATGAGGTCGCGAATGTGGGTTAA
GGTTAGCAGGGCACGCATCAGTGGGATGTAAATGGAGGTTCCCCTTCGGG
AAAAGACCTTGTGAGGTGGGTGCATCCAGTGATGACACGAGTGGTTCCGT
ACCACAAAAAATACCCTGTGTGGGAAGCAGCACTCTGTGTGTGCAATGGA
CACTCGGGAGACATGCAAAGCAAGCCAGCAAAACACGCTCTACGCCGACA
AGGGTATATTTCTTTACTTTCAAAGTTGGTTCGAGTTATGTCTCCTCCAG
TTCTAGACCCGATTTATCAGTCCTCAGAGGCATAGGAGAGGTCTTCATGC
CCCCAAAAATGCCTTGCCCACGTCTATAACAGCCTCCGCTCGACCACAAA
CTGCGAACAACATCACACATGAAACAGGTAGAATCTATGACAGCCCCTTT
CTGCCGATCCCTGCATCTCGAAAGGACGGTCATGGAGCCATCAATACCCC
GTAGGAGCATCTTCACCCGCTGCCGACACTCAAGGGCAAGGCTTTCCTTT
TTTGGTCTAGACACGATCTCCGTCGTCCTGTTTTGCATCGTGCTAGCCTT
GCACCTCCGCAGCGTCAACGCAGTGAAGCTACAAGGTGGAAGTGCCTTGG
CTTTGGCAGGGAAGGGCTGCGTGGTGCTCGCCATGGATCAACGCGTGGGC
ACGAGGTGAGAAGGAAAGCGGCTTGATTGGAGAGGTGGGATACGCAGGGA
GTCTGTCACCTACAGGCTATTCGGGCCTCCTTTTTTGAAATAAGAACGGG
CAAAATCTCCCCCTCTTTCATGCATACAGTGGACAACTTTTGCTGGGTGG
GGATGGGGGCGGCGAAGAGAACGACGCGGAAGGCGGCACCAGCGGGAGCC
AGCGCGTGCTCAAGGTATGACATGGGTGTCCGTATAGGAGTACTGGCGGG
CTGAAACGAAATTCTCTGCAGAGGTTCGAAGCTTATTCCACGATTTCTAC
GAGAATGATACATAATCACGCTCTCACTCCTCATTTTCTCTTCTTTTTAG
GTGAACGGCCGACTGCTTCTGGGCATGGTGGGATACGACTCTATGGCAAG
AGCCTTCTTCGATTTGCTTCAAGCTGAGCTGTACTTGCGGAGCATGCGCC
TGCAACATCATGTACGTTGCTCTATTACCTCTGTCTCCCATGCTGTAACC
GTTCCTGTTCTTCCATGCTCACATTCCCCTCCATCTCTTCCCATATTCCT
CCTGTCCCTTCCTCAGGCACTAGGCGAGACCTCAACAGCTATTTCGCCCA
AGGCGCTCTCCCTTCTCGTCTCCCACCTCCTTTACTTTAAATTTCGGGGC
AGTGGCACCGCCCCGATCATTGCCGGGCTTGACCAGGATGGAACGTCGGT
GTTATGCACGCAGGGTGGGGAGAAGAAGACAAGGAGGGCAAGAAATGCAG
GGGATTTGGGGAGGATAGGAATGAGAGATGGGATGGATGCCTTAACTCCC
AAATAAATACGCGCATACACTCATGATACATACCTACCCTTGTCTCACGT
CTGTCCCTTCCCCATTCACTCCTCTTTGTCATTTGCACAGATTCCCTCGG
CGCGTATTCTTTCCAAGCTGATTTTGTGGCTTTGGGATCCTCGGCCAAAT
CGTTGCTAGGGGCATGCGAAGTACGTTTTGGTGTCGAGATAGAGAGCATA
ATTTTCATCTTTGTTGATGTACTCCATCCACACGTTTTTTCTGAACCCCC
CGCTACTTCTACCCTCTGTAATTTTTCCTTGTCGAGTACTTCCTCCGCTT
TCTATCTATCTTCTCGTTCTTCTGGTTCTAATCCTCGTGTTCTCCCCCCC
CCCCCACACACCTACAGGCTCTCTACCGTCCCAATTTGGAAGGGGAGGCC
CTGATGGAGCTTGCCTGCCGCTGTCTTAGGGCGGGGCTCGAGCGTGACTG
TGTGAGTGGGTACGGTATAGTGGTATACTTGGTCACAAAGCAGGGGGTGG
CACGCACACGGTTGCAAGGACGGATGGATTAGAGGGATTAGATTAGTTTT
ATAGGCGGATGTACAGAGAAATGATGATCAAAGCAACAAAACTGATTAGT
TGCTCAAGCGAAATGTTTGCAAGCAGGAGGGCGTCCTTGCTTGGCACATT
TACC
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Coding sequence (CDS) from alignment at chr3:384513..386666+

>NO03G01250.2 ID=NO03G01250.2|Name=NO03G01250.2|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr3:384513..386666+ (Nannochloropsis oceanica)
ATGAAACAGGTAGAATCTATGACAGCCCCTTTCTGCCGATCCCTGCATCT
CGAAAGGACGGTCATGGAGCCATCAATACCCCGTAGGAGCATCTTCACCC
GCTGCCGACACTCAAGGGCAAGGCTTTCCTTTTTTGGTCTAGACACGATC
TCCGTCGTCCTGTTTTGCATCGTGCTAGCCTTGCACCTCCGCAGCGTCAA
CGCAGTGAAGCTACAAGGTGGAAGTGCCTTGGCTTTGGCAGGGAAGGGCT
GCGTGGTGCTCGCCATGGATCAACGCGTGGGCACGAGTGGACAACTTTTG
CTGGGTGGGGATGGGGGCGGCGAAGAGAACGACGCGGAAGGCGGCACCAG
CGGGAGCCAGCGCGTGCTCAAGGTGAACGGCCGACTGCTTCTGGGCATGG
TGGGATACGACTCTATGGCAAGAGCCTTCTTCGATTTGCTTCAAGCTGAG
CTGTACTTGCGGAGCATGCGCCTGCAACATCATGCACTAGGCGAGACCTC
AACAGCTATTTCGCCCAAGGCGCTCTCCCTTCTCGTCTCCCACCTCCTTT
ACTTTAAATTTCGGGGCAGTGGCACCGCCCCGATCATTGCCGGGCTTGAC
CAGGATGGAACGTCGGTGTTATGCACGCAGGGTGGGGAGAAGAAGACAAG
GAGGGCAAGAAATGCAGGGGATTTGGGGAGGATAGGAATGAGAGATGGGA
TGGATGCCTTAACTCCCAAATAA
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Synonyms
Publications