NO03G01110, NO03G01110 (gene) Nannochloropsis oceanica

Overview
NameNO03G01110
Unique NameNO03G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr3:348654..349310 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:348654..349310 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038084GlcG-like_sf
IPR005624DUF336
Homology
BLAST of NO03G01110 vs. NCBI_GenBank
Match: EWM29549.1 (protein of unknown function DUF336 [Nannochloropsis gaditana])

HSP 1 Score: 240.0 bits (611), Expect = 5.200e-60
Identity = 115/155 (74.19%), Postives = 133/155 (85.81%), Query Frame = 0
Query:    5 LSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLEGVVTEPIHHALK 160
            LSLAQAV+ICE  VA C ++GF PIT+VVMDP GH I+MQRMD+CAP A+PKFA AKAFTC+SLGVSTR FRDKYT AKDP K+CQML M D+TGGQMAPFPGGVVI+ A +G +VGAVGVSGASADEDEYCAL G++ A LEG+ TEP+ H+LK
Sbjct:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIR-AREGKVVGAVGVSGASADEDEYCALAGIEAANLEGMFTEPVCHSLK 155          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: EJK66045.1 (hypothetical protein THAOC_13052 [Thalassiosira oceanica])

HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30
Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = 0
Query:    2 PGGLSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLEGVVTEPIHHA 158
            P  ++L  A ++ +  + T    GF PI V V+D   + I  +RMD     A+P+F++AKAFTCV++  S+R FRDKYTA  DPAK  Q+ SM  ++   MA FPGGV++K    GD+VGA+GVSGA+ DEDEYCAL  V ++GL G+ T+P  H+
Sbjct:   65 PASMNLELADKLADRVIETAKRNGFAPIVVSVLDSNANQIVQKRMDGPVHAAFPEFSRAKAFTCVTMKTSSREFRDKYTADGDPAKMLQLTSM--MSIADMAAFPGGVLVKNM-SGDVVGAIGVSGAAGDEDEYCALRSVWDSGL-GLTTQPTEHS 216          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_062086874.1 (heme-binding protein [Caballeronia udeis] >SAL37016.1 hypothetical protein AWB69_03573 [Caballeronia udeis])

HSP 1 Score: 103.6 bits (257), Expect = 5.800e-19
Identity = 58/143 (40.56%), Postives = 93/143 (65.03%), Query Frame = 0
Query:    5 LSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLE 148
            LSL+QA +I + T+A     G  P+TV V+D  GH+++++R D+ +    P+ AQAKA+  + +G+  R   ++  AA+ PA F    ++ D++ G++ P PGGV+I+  E GD++GAVGVSG   +EDE CA  G++ AGL+
Sbjct:    4 LSLSQASKIMDETLAKARKLGCAPMTVAVLDAGGHLLALKREDH-SSIMRPQIAQAKAWGALGMGMGGRALAER--AAQAPAFFA---ALTDISQGRIVPVPGGVLIRNGE-GDVIGAVGVSGDHPEEDEMCAAFGIESAGLK 139          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_092849320.1 (GlcG protein [Halomonas xianhensis] >SFI06357.1 Uncharacterized conserved protein GlcG, DUF336 family [Halomonas xianhensis])

HSP 1 Score: 98.2 bits (243), Expect = 2.500e-17
Identity = 58/143 (40.56%), Postives = 87/143 (60.84%), Query Frame = 0
Query:    5 LSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLE 148
            +S  QA +I EA      +    P+TVVV+D  G+VI+ +R D CAP  +P  A+ KA+  +  GV++RV  ++   A+ PA    + +  D   G+  P PGGVVI   E+  ++GAVG+SGAS+DEDE  A+ G++EAG +
Sbjct:   12 ISRLQARQIIEAAFGNARNAAMEPLTVVVLDLGGNVIAAEREDGCAPLRFP-VAKGKAYAALGNGVASRVVGER--NAERPAFLASVAAASD---GKFVPVPGGVVILD-ENSQVIGAVGISGASSDEDEQAAMAGIREAGFQ 147          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_025240725.1 (GlcG protein [Pseudomonas stutzeri] >AHL74550.1 GlcG protein [Pseudomonas stutzeri])

HSP 1 Score: 97.1 bits (240), Expect = 5.500e-17
Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 0
Query:    8 AQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLE-GVV 151
            AQA +I +A  A   ++   P+TV VMD  G++I+ +R D CAP  +P  A+ KAF  +  GVS+R   ++  +   PA    + +  D   G   P PGGV+I  + D +++GAVG SGAS+DEDE  A+VG++ AGL  G+V
Sbjct:   15 AQARQIIDAAFAEARAKNMEPLTVFVMDAGGNLIAAEREDGCAPLRFP-VARGKAFAALGNGVSSRTVGERNESR--PAFLASVAAASD---GHFVPVPGGVLILSSND-EVIGAVGASGASSDEDEQVAVVGIEAAGLRAGIV 151          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_092962409.1 (GlcG protein [Roseomonas stagni] >SFK97321.1 Uncharacterized conserved protein GlcG, DUF336 family [Roseomonas stagni DSM 19981])

HSP 1 Score: 97.1 bits (240), Expect = 5.500e-17
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 0
Query:    4 GLSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGL 147
            G++ A A  I +AT+A     G  P+TVVV+D  GH+ +  R D C+    P  A  KAF  ++LG  +R    + TA         M ++ DL GG+  P PGGV+++ A DG ++GAVGVSG ++D+DE CA+ G+  AGL
Sbjct:   12 GITAAAARTIVDATLAKGRELGLAPLTVVVLDAGGHLKAALREDGCS-LLRPDIAWGKAFGAMALGFGSRELARRSTAMPG-----FMNALSDLAGGRAVPVPGGVLVRAA-DGAVLGAVGVSGDASDKDEVCAVAGITAAGL 147          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_003303434.1 (heme-binding protein [Pseudomonas stutzeri] >EMD98324.1 hypothetical protein B381_19771 [Pseudomonas stutzeri NF13])

HSP 1 Score: 96.7 bits (239), Expect = 7.100e-17
Identity = 56/143 (39.16%), Postives = 85/143 (59.44%), Query Frame = 0
Query:    5 LSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLE 148
            +S +QA RI +A  A   ++   P+T  VMD  GH+I+ +R D CAP   P  A+ KAF  +  GVS+R         ++  +   + S+   + G   P  GGV+I  A+D +++GAVGVSGAS+DEDE+ A+VG++ AG +
Sbjct:   12 ISRSQARRILDAAFAEARAKALEPLTAFVMDGGGHLIAAEREDGCAPLRLP-VARGKAFAALGNGVSSRT-----VGERNDLRPAFLASVAAASEGNFIPVAGGVLILNADD-EVIGAVGVSGASSDEDEHVAMVGIEAAGFK 147          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_024849318.1 (heme-binding protein [Aminobacter sp. J41])

HSP 1 Score: 96.7 bits (239), Expect = 7.100e-17
Identity = 64/141 (45.39%), Postives = 79/141 (56.03%), Query Frame = 0
Query:    5 LSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAG 146
            +SLAQA  I EAT+A        P+ VVV+D  GH IS QR D  +P    + A+ KAF   + G  TR       AA +   F    +   LTGG M P PGGV IK  +DGD VGAVGVSG ++D DE  A VG++ AG
Sbjct:    4 ISLAQANTIIEATLAKAAELKLNPLCVVVVDAGGHTISAQRQDG-SPFMRIEIARGKAFGAAATGADTRKLNQ---AAIERPHFVN--AFVALTGGNMIPVPGGVAIK-TKDGDFVGAVGVSGDTSDNDELVAKVGIEAAG 137          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_074293759.1 (GlcG protein [Paraburkholderia phenazinium] >SIN93163.1 Uncharacterized conserved protein GlcG, DUF336 family [Paraburkholderia phenazinium])

HSP 1 Score: 96.7 bits (239), Expect = 7.100e-17
Identity = 57/146 (39.04%), Postives = 92/146 (63.01%), Query Frame = 0
Query:    6 SLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLEGVVT 152
            +L QA  I +A +A     G  P+TV V+D  GH+++++R D  +    P+ AQAKA+  + +G   R   ++  AA  PA +    ++ D++GG++AP PGGV+++ A+ G++VGAVG+SG   D+DE CA+ G+  AGL+  VT
Sbjct:    5 TLDQASVIVDAALAHARELGCHPLTVAVLDAGGHLLALKREDG-SGILRPQIAQAKAWGALGMGHGGRTLAER--AASAPAFYA---ALTDISGGRIAPVPGGVLVRDAQ-GNVVGAVGISGDHPDKDEACAMRGIGRAGLQADVT 143          
BLAST of NO03G01110 vs. NCBI_GenBank
Match: WP_074294161.1 (GlcG protein [Paraburkholderia phenazinium] >SIO03152.1 Uncharacterized conserved protein GlcG, DUF336 family [Paraburkholderia phenazinium])

HSP 1 Score: 96.3 bits (238), Expect = 9.300e-17
Identity = 55/143 (38.46%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    5 LSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLE 148
            LSL+QA RI +  +    +    P+TV V+D  GH+++++R D  +    P+ AQAKA+  + +G+  RV  ++  AA  PA F    ++GD++GG++AP PGGV+++  E+ D+VGA+G+SG  ++ DE CA+  V+  GL+
Sbjct:    4 LSLSQASRIVDLALEKGRAINCMPLTVAVLDAGGHLLALKREDG-SGILRPQIAQAKAWGVLGMGLGGRVLAERALAA--PAFFA---ALGDISGGRIAPVPGGVLVRD-ENNDVVGAIGISGDKSEVDEICAVFAVESVGLK 139          
The following BLAST results are available for this feature:
BLAST of NO03G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29549.15.200e-6074.19protein of unknown function DUF336 [Nannochloropsi... [more]
EJK66045.14.300e-3047.44hypothetical protein THAOC_13052 [Thalassiosira oc... [more]
WP_062086874.15.800e-1940.56heme-binding protein [Caballeronia udeis] >SAL3701... [more]
WP_092849320.12.500e-1740.56GlcG protein [Halomonas xianhensis] >SFI06357.1 Un... [more]
WP_025240725.15.500e-1740.97GlcG protein [Pseudomonas stutzeri] >AHL74550.1 Gl... [more]
WP_092962409.15.500e-1740.56GlcG protein [Roseomonas stagni] >SFK97321.1 Uncha... [more]
WP_003303434.17.100e-1739.16heme-binding protein [Pseudomonas stutzeri] >EMD98... [more]
WP_024849318.17.100e-1745.39heme-binding protein [Aminobacter sp. J41][more]
WP_074293759.17.100e-1739.04GlcG protein [Paraburkholderia phenazinium] >SIN93... [more]
WP_074294161.19.300e-1738.46GlcG protein [Paraburkholderia phenazinium] >SIO03... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005805NSK005805Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01110.1NO03G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571605gene_1284Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g43gene1083Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01110.1NO03G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01110 ID=NO03G01110|Name=NO03G01110|organism=Nannochloropsis oceanica|type=gene|length=657bp
ACAGGTACATTCACCACAAAAACAATGCCGGGTGGCCTATCTTTGGCACA
AGCAGTCCGCATTTGCGAGGCTACTGTTGCAACGTGCACGTCTCGTGGCT
TTGGTCCCATAACTGTCGTCGTCATGGACCCCGCAGGCCATGTAATCTCG
ATGCAACGGATGGACAATTGCGCCCCGACTGCCTATCCCAAGTTCGCTCA
AGCAAAGGCCTTTACGTGTGTCTCGCTTGGAGTCTCCACGCGCGTGTTTC
GTGATAAGTATACCGCTGCAAAGGATCCAGCAAAGTTTTGCCAGATGCTC
AGCATGGGTGATTTGACAGGGGGACAGgtacgtatgtgggtaataacgga
acttgtctcctgcgttgtagctttctgttacaccgtcatcttcattttct
tcttattctttcaaaacacgcgcagATGGCACCTTTTCCCGGAGGCGTAG
TGATCAAGGGCGCAGAGGACGGCGATATAGTGGGTGCAGTGGGAGTGAGT
GGCGCTAGTGCAGACGAGGATGAGTACTGTGCGTTGGTGGGTGTGCAAGA
AGCTGGCTTGGAAGGCGTGGTCACTGAGCCGATACATCATGCACTAAAAA
ACTAAAAACTGCGACTGACGATTAAGAGATAATAATATGAATTGGGAAGG
TGAAGAT
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protein sequence of NO03G01110.1

>NO03G01110.1-protein ID=NO03G01110.1-protein|Name=NO03G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MPGGLSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCA
PTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGG
QMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLEGVV
TEPIHHALKN*
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Synonyms
Publications