NO03G01110.1, NO03G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01110.1
Unique NameNO03G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length559
Alignment locationchr3:348654..349310 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:348654..349310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G01110.1 vs.
Match: EWM29549.1 (protein of unknown function DUF336 [Nannochloropsis gaditana])

HSP 1 Score: 240.0 bits (611), Expect = 5.200e-60
Identity = 115/155 (74.19%), Postives = 133/155 (85.81%), Query Frame = 0
Query:    5 LSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCAPTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGGQMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLEGVVTEPIHHALK 160
            LSLAQAV+ICE  VA C ++GF PIT+VVMDP GH I+MQRMD+CAP A+PKFA AKAFTC+SLGVSTR FRDKYT AKDP K+CQML M D+TGGQMAPFPGGVVI+ A +G +VGAVGVSGASADEDEYCAL G++ A LEG+ TEP+ H+LK
Sbjct:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIR-AREGKVVGAVGVSGASADEDEYCALAGIEAANLEGMFTEPVCHSLK 155          
The following BLAST results are available for this feature:
BLAST of NO03G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29549.15.200e-6074.19protein of unknown function DUF336 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01110NO03G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01110.1NO03G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01110.1.cds1NO03G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01110.1.cds2NO03G01110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01110.1 ID=NO03G01110.1|Name=NO03G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
ACAGGTACATTCACCACAAAAACAATGCCGGGTGGCCTATCTTTGGCACA
AGCAGTCCGCATTTGCGAGGCTACTGTTGCAACGTGCACGTCTCGTGGCT
TTGGTCCCATAACTGTCGTCGTCATGGACCCCGCAGGCCATGTAATCTCG
ATGCAACGGATGGACAATTGCGCCCCGACTGCCTATCCCAAGTTCGCTCA
AGCAAAGGCCTTTACGTGTGTCTCGCTTGGAGTCTCCACGCGCGTGTTTC
GTGATAAGTATACCGCTGCAAAGGATCCAGCAAAGTTTTGCCAGATGCTC
AGCATGGGTGATTTGACAGGGGGACAGATGGCACCTTTTCCCGGAGGCGT
AGTGATCAAGGGCGCAGAGGACGGCGATATAGTGGGTGCAGTGGGAGTGA
GTGGCGCTAGTGCAGACGAGGATGAGTACTGTGCGTTGGTGGGTGTGCAA
GAAGCTGGCTTGGAAGGCGTGGTCACTGAGCCGATACATCATGCACTAAA
AAACTAAAAACTGCGACTGACGATTAAGAGATAATAATATGAATTGGGAA
GGTGAAGAT
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protein sequence of NO03G01110.1

>NO03G01110.1-protein ID=NO03G01110.1-protein|Name=NO03G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MPGGLSLAQAVRICEATVATCTSRGFGPITVVVMDPAGHVISMQRMDNCA
PTAYPKFAQAKAFTCVSLGVSTRVFRDKYTAAKDPAKFCQMLSMGDLTGG
QMAPFPGGVVIKGAEDGDIVGAVGVSGASADEDEYCALVGVQEAGLEGVV
TEPIHHALKN*
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mRNA from alignment at chr3:348654..349310+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01110.1 ID=NO03G01110.1|Name=NO03G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at chr3:348654..349310+ (Nannochloropsis oceanica)
ACAGGTACATTCACCACAAAAACAATGCCGGGTGGCCTATCTTTGGCACA AGCAGTCCGCATTTGCGAGGCTACTGTTGCAACGTGCACGTCTCGTGGCT TTGGTCCCATAACTGTCGTCGTCATGGACCCCGCAGGCCATGTAATCTCG ATGCAACGGATGGACAATTGCGCCCCGACTGCCTATCCCAAGTTCGCTCA AGCAAAGGCCTTTACGTGTGTCTCGCTTGGAGTCTCCACGCGCGTGTTTC GTGATAAGTATACCGCTGCAAAGGATCCAGCAAAGTTTTGCCAGATGCTC AGCATGGGTGATTTGACAGGGGGACAGGTACGTATGTGGGTAATAACGGA ACTTGTCTCCTGCGTTGTAGCTTTCTGTTACACCGTCATCTTCATTTTCT TCTTATTCTTTCAAAACACGCGCAGATGGCACCTTTTCCCGGAGGCGTAG TGATCAAGGGCGCAGAGGACGGCGATATAGTGGGTGCAGTGGGAGTGAGT GGCGCTAGTGCAGACGAGGATGAGTACTGTGCGTTGGTGGGTGTGCAAGA AGCTGGCTTGGAAGGCGTGGTCACTGAGCCGATACATCATGCACTAAAAA ACTAAAAACTGCGACTGACGATTAAGAGATAATAATATGAATTGGGAAGG TGAAGAT
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Coding sequence (CDS) from alignment at chr3:348654..349310+

>NO03G01110.1 ID=NO03G01110.1|Name=NO03G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at chr3:348654..349310+ (Nannochloropsis oceanica)
ATGCCGGGTGGCCTATCTTTGGCACAAGCAGTCCGCATTTGCGAGGCTAC
TGTTGCAACGTGCACGTCTCGTGGCTTTGGTCCCATAACTGTCGTCGTCA
TGGACCCCGCAGGCCATGTAATCTCGATGCAACGGATGGACAATTGCGCC
CCGACTGCCTATCCCAAGTTCGCTCAAGCAAAGGCCTTTACGTGTGTCTC
GCTTGGAGTCTCCACGCGCGTGTTTCGTGATAAGTATACCGCTGCAAAGG
ATCCAGCAAAGTTTTGCCAGATGCTCAGCATGGGTGATTTGACAGGGGGA
CAGATGGCACCTTTTCCCGGAGGCGTAGTGATCAAGGGCGCAGAGGACGG
CGATATAGTGGGTGCAGTGGGAGTGAGTGGCGCTAGTGCAGACGAGGATG
AGTACTGTGCGTTGGTGGGTGTGCAAGAAGCTGGCTTGGAAGGCGTGGTC
ACTGAGCCGATACATCATGCACTAAAAAACTAA
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Synonyms
Publications