NO03G01090, NO03G01090 (gene) Nannochloropsis oceanica

Overview
NameNO03G01090
Unique NameNO03G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr3:345649..347238 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:345649..347238 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027973DUF4602
Homology
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BLAST of NO03G01090 vs. NCBI_GenBank
Match: XP_005856241.1 (hypothetical protein NGA_2008000, partial [Nannochloropsis gaditana CCMP526] >EKU20116.1 hypothetical protein NGA_2008000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.3 bits (521), Expect = 3.500e-49
Identity = 137/212 (64.62%), Postives = 149/212 (70.28%), Query Frame = 0 
Query:  148 GKHPRPPVHVVVAPSVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRVPSNPTAAQERAEFKKMWKSVMDLGATQLTGHEKKAYEARRIVELGGKAPTAIKTPFNILIGKLAKHKHRDARRDNELKESGVXXXXXXXXXXXXXXXXXXXXXXRSHDSSGRIGDSPYPVLGKMKGGMLYLNRETIQTFTAGRRGGGS----GGRGRG 356
            GK PRPPV VVVAPS+PS                                     SN   A ERAEFKKMWKSVMDLGA QLTG+EKKAY+ARRIVELGGKAP AIKTPFNIL+GK AK K RDARRDN+++ESGV XXXXXXXXXXXXXXXXXXXX R HDSSG+IG++PYPVLGKMKGG L+LNR TIQ  T  +RGG      GGRGRG
Sbjct:    9 GKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGAL----SNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVXXXXXXXXXXXXXXXXXXXXRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMAKRGGRGGDKRGGRGRG 216
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BLAST of NO03G01090 vs. NCBI_GenBank
Match: EWM29533.1 (hypothetical protein Naga_100006g41 [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 5.900e-49
Identity = 133/203 (65.52%), Postives = 145/203 (71.43%), Query Frame = 0 
Query:  148 GKHPRPPVHVVVAPSVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRVPSNPTAAQERAEFKKMWKSVMDLGATQLTGHEKKAYEARRIVELGGKAPTAIKTPFNILIGKLAKHKHRDARRDNELKESGVXXXXXXXXXXXXXXXXXXXXXXRSHDSSGRIGDSPYPVLGKMKGGMLYLNRETIQTFTAGRRGGGSG 351
            GK PRPPV VVVAPS+PS                                     SN   A ERAEFKKMWKSVMDLGA QLTG+EKKAY+ARRIVELGGKAP AIKTPFNIL+GK AK K RDARRDN+++ESGV XXXXXXXXXXXXXXXXXXXX R HDSSG+IG++PYPVLGKMKGG L+LNR TIQ  T G+RGG  G
Sbjct:    3 GKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGAL----SNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVXXXXXXXXXXXXXXXXXXXXRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMGKRGGRGG 201
The following BLAST results are available for this feature:
BLAST of NO03G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005856241.13.500e-4964.62hypothetical protein NGA_2008000, partial [Nannoch... [more]
EWM29533.15.900e-4965.52hypothetical protein Naga_100006g41 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005807NSK005807Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01090.1NO03G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571595gene_1281Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g41gene1085Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01090.1NO03G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01090 ID=NO03G01090|Name=NO03G01090|organism=Nannochloropsis oceanica|type=gene|length=1590bp
ATGTCCCAACACAAGCATAACTATCAGCACCACCACCATCTCCACCAGCA
GCACCACAACCACCAGAATCAGCAGCAGCACTGGGAGCACCAGGAGCAGT
ACCAATCAACTCTTCCGGTCGGCCTCATCGCAAGACTATCAGCACTACCG
CCGCCGCCGCTGAACCAGCAGGAACATGGGCAGGAGCACCTGACAAGAAT
TATATTGACAGAAACGGAGGGATCCGCCGTTCCCCCCCGCCTCGCGTTAC
CTGGACGCCCGCAATTCTGGCCCCGCTGCTTGATATCATACCAGGGCCTG
CGACTGGAAGAGAGGAGGCCGTCCCTTTTCCATCTTACAGGCCAACCGTC
GGCCAACTTCCTCTCCATCCCCACGAGTAGGTACGAACTCCTGGCAACCA
TGACTACCGACGGCGAGCGTGCCATGTTCTCCTCCCATCGAGgtaaagca
ccgctgcgaccccatccccttggcggaagccggccagaaggacctcgcca
gaatcatactgcagcatgctcagtctcttgggggtcttcaggtcattaag
aaggaacagtaccatataactacgttgtgcatgcgagagaaagcatcata
acgagcttcgggttgcgttgtccactcgcttctcgaagaacccgttgttg
cgaaggaacaccccagctatgaaattttatttgagttgttccccgccctt
cttccattcatgaaatggcctttatagggaaaagtcatcatagatggggc
acaattcttgttcgggactgggactgacacgcccgcaatcacagccactt
ttagaaccaaaactaacgacttactctacaaccacagtgagccatgccag
GCAAACATCCGCGGCCGCCCGTTCATGTGGTCGTGGCGCCTTCCGTTCCA
TCTCCCTATCAGTACAAGCAGCAGCTCCAACGCGAGAAGGACCGGCAGGA
CGGGGGGAGCCGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCCCCCGCC
CCGACAGAGTACCCTCGAACCCAACCGCTGCGCAAGAACGCGCTGAATTT
AAGAAAATGTGGAAAAGCGTGATGGATCTGGGGGCGACCCAATTGACAGG
CCACGAAAAAAAAGCGTACGAGGCCCGACGCATCGTCGAGCTGGGTGGTA
AGGCCCCGACGGCGATCAAGACCCCCTTCAACATCCTGATTGGCAAGCTC
GCCAAGCACAAGCATCGAGACGCCCGCCGGGACAACGAACTGAAGGAATC
GGGAGTGGTAGTGGCCAAGAAGAGGCAGTCTGCGGCGGCATTGGCCAGTG
AGGTACTGGATGACGGAGGGCGGCGGTCGCATGACAGCAGCGGACGGATT
GGAGACTCACCCTACCCTGTGCTGGGCAAGATGAAAGGGGGCATGTTGTA
CTTGAACCGGGAAACGATCCAGACGTTTACAGCAGGCAGGCGTGGCGGTG
GTAGCGGCGGTAGGGGAAGGGGCGGGGGGAGAGTGATGGGAGGAGGAAGA
GGAAGAGGAAGAGGGGGTGGGAAGGGAATGGGGGGAAGTCGGGGAGTGAG
TATAGGTAGTGGAAGAGGCGGCGGGCGAGGGAGACGGTGA
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protein sequence of NO03G01090.1

>NO03G01090.1-protein ID=NO03G01090.1-protein|Name=NO03G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MSQHKHNYQHHHHLHQQHHNHQNQQQHWEHQEQYQSTLPVGLIARLSALP
PPPLNQQEHGQEHLTRIILTETEGSAVPPRLALPGRPQFWPRCLISYQGL
RLEERRPSLFHLTGQPSANFLSIPTSRYELLATMTTDGERAMFSSHRGKH
PRPPVHVVVAPSVPSPYQYKQQLQREKDRQDGGSRNSSSNSSSKRPRPDR
VPSNPTAAQERAEFKKMWKSVMDLGATQLTGHEKKAYEARRIVELGGKAP
TAIKTPFNILIGKLAKHKHRDARRDNELKESGVVVAKKRQSAAALASEVL
DDGGRRSHDSSGRIGDSPYPVLGKMKGGMLYLNRETIQTFTAGRRGGGSG
GRGRGGGRVMGGGRGRGRGGGKGMGGSRGVSIGSGRGGGRGRR*
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Synonyms
Publications