NO03G01090.1, NO03G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01090.1
Unique NameNO03G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1182
Alignment locationchr3:345649..347238 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:345649..347238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01090.1 vs.
Match: EWM29533.1 (hypothetical protein Naga_100006g41 [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 3.200e-71
Identity = 163/246 (66.26%), Postives = 185/246 (75.20%), Query Frame = 0 
Query:  148 GKHPRPPVHVVVAPSVPSPYQYKQQLQREK-DRQDGGSRNSSSNSSSKRPRPDRVPSNPTAAQERAEFKKMWKSVMDLGATQLTGHEKKAYEARRIVELGGKAPTAIKTPFNILIGKLAKHKHRDARRDNELKESGVVVAKKRQSAAALASEVLDDGGRRSHDSSGRIGDSPYPVLGKMKGGMLYLNRETIQTFTAGRRGGGSGGRGRGGGRVMGGGRGRGRGGGKGMGGSRGVSIGSGRGGGRGR 393
            GK PRPPV VVVAPS+PSPY+YK QLQRE+ +RQD      ++N S KR R     SN   A ERAEFKKMWKSVMDLGA QLTG+EKKAY+ARRIVELGGKAP AIKTPFNIL+GK AK K RDARRDN+++ESGVVVAKKRQSAAALA+++LDDGGRR HDSSG+IG++PYPVLGKMKGG L+LNR TIQ  T G+RG                    GRGG K  G  RG ++GSGR  GRGR
Sbjct:    3 GKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQD-----EAANGSYKRARSGGALSNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMGKRG--------------------GRGGDKRGGRGRGEAVGSGRAAGRGR 223
The following BLAST results are available for this feature:
BLAST of NO03G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29533.13.200e-7166.26hypothetical protein Naga_100006g41 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01090NO03G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01090.1NO03G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01090.1.cds1NO03G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01090.1.cds2NO03G01090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01090.1 ID=NO03G01090.1|Name=NO03G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
ATGTCCCAACACAAGCATAACTATCAGCACCACCACCATCTCCACCAGCA
GCACCACAACCACCAGAATCAGCAGCAGCACTGGGAGCACCAGGAGCAGT
ACCAATCAACTCTTCCGGTCGGCCTCATCGCAAGACTATCAGCACTACCG
CCGCCGCCGCTGAACCAGCAGGAACATGGGCAGGAGCACCTGACAAGAAT
TATATTGACAGAAACGGAGGGATCCGCCGTTCCCCCCCGCCTCGCGTTAC
CTGGACGCCCGCAATTCTGGCCCCGCTGCTTGATATCATACCAGGGCCTG
CGACTGGAAGAGAGGAGGCCGTCCCTTTTCCATCTTACAGGCCAACCGTC
GGCCAACTTCCTCTCCATCCCCACGAGTAGGTACGAACTCCTGGCAACCA
TGACTACCGACGGCGAGCGTGCCATGTTCTCCTCCCATCGAGGCAAACAT
CCGCGGCCGCCCGTTCATGTGGTCGTGGCGCCTTCCGTTCCATCTCCCTA
TCAGTACAAGCAGCAGCTCCAACGCGAGAAGGACCGGCAGGACGGGGGGA
GCCGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCCCCCGCCCCGACAGA
GTACCCTCGAACCCAACCGCTGCGCAAGAACGCGCTGAATTTAAGAAAAT
GTGGAAAAGCGTGATGGATCTGGGGGCGACCCAATTGACAGGCCACGAAA
AAAAAGCGTACGAGGCCCGACGCATCGTCGAGCTGGGTGGTAAGGCCCCG
ACGGCGATCAAGACCCCCTTCAACATCCTGATTGGCAAGCTCGCCAAGCA
CAAGCATCGAGACGCCCGCCGGGACAACGAACTGAAGGAATCGGGAGTGG
TAGTGGCCAAGAAGAGGCAGTCTGCGGCGGCATTGGCCAGTGAGGTACTG
GATGACGGAGGGCGGCGGTCGCATGACAGCAGCGGACGGATTGGAGACTC
ACCCTACCCTGTGCTGGGCAAGATGAAAGGGGGCATGTTGTACTTGAACC
GGGAAACGATCCAGACGTTTACAGCAGGCAGGCGTGGCGGTGGTAGCGGC
GGTAGGGGAAGGGGCGGGGGGAGAGTGATGGGAGGAGGAAGAGGAAGAGG
AAGAGGGGGTGGGAAGGGAATGGGGGGAAGTCGGGGAGTGAGTATAGGTA
GTGGAAGAGGCGGCGGGCGAGGGAGACGGTGA
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protein sequence of NO03G01090.1

>NO03G01090.1-protein ID=NO03G01090.1-protein|Name=NO03G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MSQHKHNYQHHHHLHQQHHNHQNQQQHWEHQEQYQSTLPVGLIARLSALP
PPPLNQQEHGQEHLTRIILTETEGSAVPPRLALPGRPQFWPRCLISYQGL
RLEERRPSLFHLTGQPSANFLSIPTSRYELLATMTTDGERAMFSSHRGKH
PRPPVHVVVAPSVPSPYQYKQQLQREKDRQDGGSRNSSSNSSSKRPRPDR
VPSNPTAAQERAEFKKMWKSVMDLGATQLTGHEKKAYEARRIVELGGKAP
TAIKTPFNILIGKLAKHKHRDARRDNELKESGVVVAKKRQSAAALASEVL
DDGGRRSHDSSGRIGDSPYPVLGKMKGGMLYLNRETIQTFTAGRRGGGSG
GRGRGGGRVMGGGRGRGRGGGKGMGGSRGVSIGSGRGGGRGRR*
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mRNA from alignment at chr3:345649..347238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01090.1 ID=NO03G01090.1|Name=NO03G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at chr3:345649..347238+ (Nannochloropsis oceanica)
ATGTCCCAACACAAGCATAACTATCAGCACCACCACCATCTCCACCAGCA
GCACCACAACCACCAGAATCAGCAGCAGCACTGGGAGCACCAGGAGCAGT
ACCAATCAACTCTTCCGGTCGGCCTCATCGCAAGACTATCAGCACTACCG
CCGCCGCCGCTGAACCAGCAGGAACATGGGCAGGAGCACCTGACAAGAAT
TATATTGACAGAAACGGAGGGATCCGCCGTTCCCCCCCGCCTCGCGTTAC
CTGGACGCCCGCAATTCTGGCCCCGCTGCTTGATATCATACCAGGGCCTG
CGACTGGAAGAGAGGAGGCCGTCCCTTTTCCATCTTACAGGCCAACCGTC
GGCCAACTTCCTCTCCATCCCCACGAGTAGGTACGAACTCCTGGCAACCA
TGACTACCGACGGCGAGCGTGCCATGTTCTCCTCCCATCGAGGTAAAGCA
CCGCTGCGACCCCATCCCCTTGGCGGAAGCCGGCCAGAAGGACCTCGCCA
GAATCATACTGCAGCATGCTCAGTCTCTTGGGGGTCTTCAGGTCATTAAG
AAGGAACAGTACCATATAACTACGTTGTGCATGCGAGAGAAAGCATCATA
ACGAGCTTCGGGTTGCGTTGTCCACTCGCTTCTCGAAGAACCCGTTGTTG
CGAAGGAACACCCCAGCTATGAAATTTTATTTGAGTTGTTCCCCGCCCTT
CTTCCATTCATGAAATGGCCTTTATAGGGAAAAGTCATCATAGATGGGGC
ACAATTCTTGTTCGGGACTGGGACTGACACGCCCGCAATCACAGCCACTT
TTAGAACCAAAACTAACGACTTACTCTACAACCACAGTGAGCCATGCCAG
GCAAACATCCGCGGCCGCCCGTTCATGTGGTCGTGGCGCCTTCCGTTCCA
TCTCCCTATCAGTACAAGCAGCAGCTCCAACGCGAGAAGGACCGGCAGGA
CGGGGGGAGCCGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCCCCCGCC
CCGACAGAGTACCCTCGAACCCAACCGCTGCGCAAGAACGCGCTGAATTT
AAGAAAATGTGGAAAAGCGTGATGGATCTGGGGGCGACCCAATTGACAGG
CCACGAAAAAAAAGCGTACGAGGCCCGACGCATCGTCGAGCTGGGTGGTA
AGGCCCCGACGGCGATCAAGACCCCCTTCAACATCCTGATTGGCAAGCTC
GCCAAGCACAAGCATCGAGACGCCCGCCGGGACAACGAACTGAAGGAATC
GGGAGTGGTAGTGGCCAAGAAGAGGCAGTCTGCGGCGGCATTGGCCAGTG
AGGTACTGGATGACGGAGGGCGGCGGTCGCATGACAGCAGCGGACGGATT
GGAGACTCACCCTACCCTGTGCTGGGCAAGATGAAAGGGGGCATGTTGTA
CTTGAACCGGGAAACGATCCAGACGTTTACAGCAGGCAGGCGTGGCGGTG
GTAGCGGCGGTAGGGGAAGGGGCGGGGGGAGAGTGATGGGAGGAGGAAGA
GGAAGAGGAAGAGGGGGTGGGAAGGGAATGGGGGGAAGTCGGGGAGTGAG
TATAGGTAGTGGAAGAGGCGGCGGGCGAGGGAGACGGTGA
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Coding sequence (CDS) from alignment at chr3:345649..347238+

>NO03G01090.1 ID=NO03G01090.1|Name=NO03G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr3:345649..347238+ (Nannochloropsis oceanica)
ATGTCCCAACACAAGCATAACTATCAGCACCACCACCATCTCCACCAGCA
GCACCACAACCACCAGAATCAGCAGCAGCACTGGGAGCACCAGGAGCAGT
ACCAATCAACTCTTCCGGTCGGCCTCATCGCAAGACTATCAGCACTACCG
CCGCCGCCGCTGAACCAGCAGGAACATGGGCAGGAGCACCTGACAAGAAT
TATATTGACAGAAACGGAGGGATCCGCCGTTCCCCCCCGCCTCGCGTTAC
CTGGACGCCCGCAATTCTGGCCCCGCTGCTTGATATCATACCAGGGCCTG
CGACTGGAAGAGAGGAGGCCGTCCCTTTTCCATCTTACAGGCCAACCGTC
GGCCAACTTCCTCTCCATCCCCACGAGTAGGTACGAACTCCTGGCAACCA
TGACTACCGACGGCGAGCGTGCCATGTTCTCCTCCCATCGAGGCAAACAT
CCGCGGCCGCCCGTTCATGTGGTCGTGGCGCCTTCCGTTCCATCTCCCTA
TCAGTACAAGCAGCAGCTCCAACGCGAGAAGGACCGGCAGGACGGGGGGA
GCCGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCCCCCGCCCCGACAGA
GTACCCTCGAACCCAACCGCTGCGCAAGAACGCGCTGAATTTAAGAAAAT
GTGGAAAAGCGTGATGGATCTGGGGGCGACCCAATTGACAGGCCACGAAA
AAAAAGCGTACGAGGCCCGACGCATCGTCGAGCTGGGTGGTAAGGCCCCG
ACGGCGATCAAGACCCCCTTCAACATCCTGATTGGCAAGCTCGCCAAGCA
CAAGCATCGAGACGCCCGCCGGGACAACGAACTGAAGGAATCGGGAGTGG
TAGTGGCCAAGAAGAGGCAGTCTGCGGCGGCATTGGCCAGTGAGGTACTG
GATGACGGAGGGCGGCGGTCGCATGACAGCAGCGGACGGATTGGAGACTC
ACCCTACCCTGTGCTGGGCAAGATGAAAGGGGGCATGTTGTACTTGAACC
GGGAAACGATCCAGACGTTTACAGCAGGCAGGCGTGGCGGTGGTAGCGGC
GGTAGGGGAAGGGGCGGGGGGAGAGTGATGGGAGGAGGAAGAGGAAGAGG
AAGAGGGGGTGGGAAGGGAATGGGGGGAAGTCGGGGAGTGAGTATAGGTA
GTGGAAGAGGCGGCGGGCGAGGGAGACGGTGA
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Synonyms
Publications