NO03G01050, NO03G01050 (gene) Nannochloropsis oceanica

Overview
NameNO03G01050
Unique NameNO03G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1073
Alignment locationchr3:331866..332938 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:331866..332938 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G01050 vs. NCBI_GenBank
Match: EWM29590.1 (hypothetical protein Naga_100006g38 [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 1.800e-32
Identity = 76/139 (54.68%), Postives = 91/139 (65.47%), Query Frame = 0 
Query:  108 EMGETVRFSLPKMNGLPVDYCSRYQRAGVRGGSRGIDCGLPAATRFCRSQGYDGSTGDYIVTYYSNRATFTMADESIHPADPPGDGKGRHTWFTSITCRSS-----------GHPRGEVAADLVLVPV---AGGKGEEG 233
            E+  TVRF +PK  GLPVDYC RYQ   VR   RGIDCG+PAA+++CR QG D S  DY+VTYYS++AT T+ D ++H ADP GDGKGRHTWFTSITCR S           G P  E++     V V   AGG+  EG
Sbjct:   93 EIEGTVRFIMPKFRGLPVDYCLRYQHGSVRRERRGIDCGVPAASQYCRDQGMDDSI-DYVVTYYSSQATSTLGDGAVHAADPTGDGKGRHTWFTSITCRFSVGEDVAVAEAGGWPVEEISTRWEAVDVKSTAGGRSMEG 230
The following BLAST results are available for this feature:
BLAST of NO03G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29590.11.800e-3254.68hypothetical protein Naga_100006g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005810NSK005810Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01050.1NO03G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571578gene_1275Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g38gene1088Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01050.1NO03G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01050 ID=NO03G01050|Name=NO03G01050|organism=Nannochloropsis oceanica|type=gene|length=1073bp
ATGAGCCACGCACGACGCACCTTCACCGCCGCCGCCCTAATTCTGTTGAG
CTTAGCGTCCGCACAGgtaagactcaggaatagttagtgtgaaagagaag
gtcagtgaggatggtggcctcgttccgcgttgccagattcgtcgccggcc
tgggccctcgttctccacaatgccgaagaaagtgtgctgaatggtatcac
gtaatgcacttgtgagaaatgcgatcatgcgccattggacagacgggaat
tggcgtgtatcaaaatttagtctcgacggatggctctatataactcccct
cttgcactcgatgatccttgcttcacccgcccaaataggcaaaatctgtc
ttcacgcatggcgcacttgtcgctattcttgagacacttacacgcaacac
acaaaccatcctctctatgtaacagGACCTGCAGGTAACGGAAACCAGGC
CCCAAACTCAACATCAGCAACAACAGGTGCGCCCCCCACGACCCACCGAG
GAAGTCCTGAAGCCCGTAGGCGTGGTCACAGCCGAAGCCTCTTCTCGTGG
TTCCAGTAGCAGCACCTCTGTCGCTGTTCCTATTGTTCCTCTTCCTCCCA
AACCCGTAACCGTGCCAGCCCCTGCCACTCAGCAGCAGACTGCTCAACCC
CAACCAAAATCAAGAGAAGGAGCAGGTCACGAAATGGGGGAAACGGTCCG
CTTTTCCCTGCCGAAAATGAACGGGCTGCCGGTAGATTATTGCTCGAGGT
ACCAGCGAGCTGGTGTGCGAGGCGGAAGTCGCGGTATTGATTGCGGTCTC
CCTGCCGCGACCCGATTCTGCCGCTCGCAAGGCTATGATGGCTCCACGGG
AGATTACATCGTGACTTACTACTCGAATCGGGCTACATTCACCATGGCCG
ATGAATCAATACACCCCGCGGATCCCCCTGGTGATGGGAAAGGGAGGCAT
ACCTGGTTTACCAGCATTACCTGTCGATCTTCTGGACATCCCAGAGGCGA
AGTGGCTGCGGATTTGGTCTTGGTGCCGGTGGCAGGAGGAAAGGGGGAGG
AGGGGGGATTTCATCGTTTTTGA
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protein sequence of NO03G01050.1

>NO03G01050.1-protein ID=NO03G01050.1-protein|Name=NO03G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MSHARRTFTAAALILLSLASAQDLQVTETRPQTQHQQQQVRPPRPTEEVL
KPVGVVTAEASSRGSSSSTSVAVPIVPLPPKPVTVPAPATQQQTAQPQPK
SREGAGHEMGETVRFSLPKMNGLPVDYCSRYQRAGVRGGSRGIDCGLPAA
TRFCRSQGYDGSTGDYIVTYYSNRATFTMADESIHPADPPGDGKGRHTWF
TSITCRSSGHPRGEVAADLVLVPVAGGKGEEGGFHRF*
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Synonyms
Publications