NO03G01050.1, NO03G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01050.1
Unique NameNO03G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length714
Alignment locationchr3:331866..332938 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:331866..332938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01050.1 vs.
Match: EWM29590.1 (hypothetical protein Naga_100006g38 [Nannochloropsis gaditana])

HSP 1 Score: 146.4 bits (368), Expect = 1.200e-31
Identity = 105/250 (42.00%), Postives = 132/250 (52.80%), Query Frame = 0 
Query:    1 MSHARRTFTAAALILLSLASAQDLQVTETRPQTQHQQQQVRPPRPTEEVLKPVGVVTAEASSRGSSSSTSVAVPIVPLPPKPVTVPAPATQQQTAQ-PQPKSREGA---GHEMGETVRFSLPKMNGLPVDYCSRYQRAGVRGGSRGIDCGLPAATRFCRSQGYDGSTGDYIVTYYSNRATFTMADESIHPADPPGDGKGRHTWFTSITCRSS-----------GHPRGEVAADLVLVPV---AGGKGEEG 233
            M HAR   T  AL +L +A+ Q+L+  E           +R P  +E  L PV    A     G+ +S S           PV   AP+     +  P P  R+       E+  TVRF +PK  GLPVDYC RYQ   VR   RGIDCG+PAA+++CR QG D S  DY+VTYYS++AT T+ D ++H ADP GDGKGRHTWFTSITCR S           G P  E++     V V   AGG+  EG
Sbjct:    1 MIHARGV-TIVALSILGMAAGQNLRFPEAA-------DGLRLPESSEGTL-PVSNNAASHPLIGAPASES----------SPVRSSAPSVSVSPSHFPSPVVRDMGLYTSDEIEGTVRFIMPKFRGLPVDYCLRYQHGSVRRERRGIDCGVPAASQYCRDQGMDDSI-DYVVTYYSSQATSTLGDGAVHAADPTGDGKGRHTWFTSITCRFSVGEDVAVAEAGGWPVEEISTRWEAVDVKSTAGGRSMEG 230
The following BLAST results are available for this feature:
BLAST of NO03G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29590.11.200e-3142.00hypothetical protein Naga_100006g38 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01050NO03G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01050.1NO03G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01050.1.cds1NO03G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01050.1.cds2NO03G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01050.1 ID=NO03G01050.1|Name=NO03G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=714bp
ATGAGCCACGCACGACGCACCTTCACCGCCGCCGCCCTAATTCTGTTGAG
CTTAGCGTCCGCACAGGACCTGCAGGTAACGGAAACCAGGCCCCAAACTC
AACATCAGCAACAACAGGTGCGCCCCCCACGACCCACCGAGGAAGTCCTG
AAGCCCGTAGGCGTGGTCACAGCCGAAGCCTCTTCTCGTGGTTCCAGTAG
CAGCACCTCTGTCGCTGTTCCTATTGTTCCTCTTCCTCCCAAACCCGTAA
CCGTGCCAGCCCCTGCCACTCAGCAGCAGACTGCTCAACCCCAACCAAAA
TCAAGAGAAGGAGCAGGTCACGAAATGGGGGAAACGGTCCGCTTTTCCCT
GCCGAAAATGAACGGGCTGCCGGTAGATTATTGCTCGAGGTACCAGCGAG
CTGGTGTGCGAGGCGGAAGTCGCGGTATTGATTGCGGTCTCCCTGCCGCG
ACCCGATTCTGCCGCTCGCAAGGCTATGATGGCTCCACGGGAGATTACAT
CGTGACTTACTACTCGAATCGGGCTACATTCACCATGGCCGATGAATCAA
TACACCCCGCGGATCCCCCTGGTGATGGGAAAGGGAGGCATACCTGGTTT
ACCAGCATTACCTGTCGATCTTCTGGACATCCCAGAGGCGAAGTGGCTGC
GGATTTGGTCTTGGTGCCGGTGGCAGGAGGAAAGGGGGAGGAGGGGGGAT
TTCATCGTTTTTGA
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protein sequence of NO03G01050.1

>NO03G01050.1-protein ID=NO03G01050.1-protein|Name=NO03G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MSHARRTFTAAALILLSLASAQDLQVTETRPQTQHQQQQVRPPRPTEEVL
KPVGVVTAEASSRGSSSSTSVAVPIVPLPPKPVTVPAPATQQQTAQPQPK
SREGAGHEMGETVRFSLPKMNGLPVDYCSRYQRAGVRGGSRGIDCGLPAA
TRFCRSQGYDGSTGDYIVTYYSNRATFTMADESIHPADPPGDGKGRHTWF
TSITCRSSGHPRGEVAADLVLVPVAGGKGEEGGFHRF*
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mRNA from alignment at chr3:331866..332938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01050.1 ID=NO03G01050.1|Name=NO03G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at chr3:331866..332938- (Nannochloropsis oceanica)
ATGAGCCACGCACGACGCACCTTCACCGCCGCCGCCCTAATTCTGTTGAG
CTTAGCGTCCGCACAGGTAAGACTCAGGAATAGTTAGTGTGAAAGAGAAG
GTCAGTGAGGATGGTGGCCTCGTTCCGCGTTGCCAGATTCGTCGCCGGCC
TGGGCCCTCGTTCTCCACAATGCCGAAGAAAGTGTGCTGAATGGTATCAC
GTAATGCACTTGTGAGAAATGCGATCATGCGCCATTGGACAGACGGGAAT
TGGCGTGTATCAAAATTTAGTCTCGACGGATGGCTCTATATAACTCCCCT
CTTGCACTCGATGATCCTTGCTTCACCCGCCCAAATAGGCAAAATCTGTC
TTCACGCATGGCGCACTTGTCGCTATTCTTGAGACACTTACACGCAACAC
ACAAACCATCCTCTCTATGTAACAGGACCTGCAGGTAACGGAAACCAGGC
CCCAAACTCAACATCAGCAACAACAGGTGCGCCCCCCACGACCCACCGAG
GAAGTCCTGAAGCCCGTAGGCGTGGTCACAGCCGAAGCCTCTTCTCGTGG
TTCCAGTAGCAGCACCTCTGTCGCTGTTCCTATTGTTCCTCTTCCTCCCA
AACCCGTAACCGTGCCAGCCCCTGCCACTCAGCAGCAGACTGCTCAACCC
CAACCAAAATCAAGAGAAGGAGCAGGTCACGAAATGGGGGAAACGGTCCG
CTTTTCCCTGCCGAAAATGAACGGGCTGCCGGTAGATTATTGCTCGAGGT
ACCAGCGAGCTGGTGTGCGAGGCGGAAGTCGCGGTATTGATTGCGGTCTC
CCTGCCGCGACCCGATTCTGCCGCTCGCAAGGCTATGATGGCTCCACGGG
AGATTACATCGTGACTTACTACTCGAATCGGGCTACATTCACCATGGCCG
ATGAATCAATACACCCCGCGGATCCCCCTGGTGATGGGAAAGGGAGGCAT
ACCTGGTTTACCAGCATTACCTGTCGATCTTCTGGACATCCCAGAGGCGA
AGTGGCTGCGGATTTGGTCTTGGTGCCGGTGGCAGGAGGAAAGGGGGAGG
AGGGGGGATTTCATCGTTTTTGA
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Coding sequence (CDS) from alignment at chr3:331866..332938-

>NO03G01050.1 ID=NO03G01050.1|Name=NO03G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr3:331866..332938- (Nannochloropsis oceanica)
ATGAGCCACGCACGACGCACCTTCACCGCCGCCGCCCTAATTCTGTTGAG
CTTAGCGTCCGCACAGGACCTGCAGGTAACGGAAACCAGGCCCCAAACTC
AACATCAGCAACAACAGGTGCGCCCCCCACGACCCACCGAGGAAGTCCTG
AAGCCCGTAGGCGTGGTCACAGCCGAAGCCTCTTCTCGTGGTTCCAGTAG
CAGCACCTCTGTCGCTGTTCCTATTGTTCCTCTTCCTCCCAAACCCGTAA
CCGTGCCAGCCCCTGCCACTCAGCAGCAGACTGCTCAACCCCAACCAAAA
TCAAGAGAAGGAGCAGGTCACGAAATGGGGGAAACGGTCCGCTTTTCCCT
GCCGAAAATGAACGGGCTGCCGGTAGATTATTGCTCGAGGTACCAGCGAG
CTGGTGTGCGAGGCGGAAGTCGCGGTATTGATTGCGGTCTCCCTGCCGCG
ACCCGATTCTGCCGCTCGCAAGGCTATGATGGCTCCACGGGAGATTACAT
CGTGACTTACTACTCGAATCGGGCTACATTCACCATGGCCGATGAATCAA
TACACCCCGCGGATCCCCCTGGTGATGGGAAAGGGAGGCATACCTGGTTT
ACCAGCATTACCTGTCGATCTTCTGGACATCCCAGAGGCGAAGTGGCTGC
GGATTTGGTCTTGGTGCCGGTGGCAGGAGGAAAGGGGGAGGAGGGGGGAT
TTCATCGTTTTTGA
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Synonyms
Publications