NO03G00880, NO03G00880 (gene) Nannochloropsis oceanica

Overview
NameNO03G00880
Unique NameNO03G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2109
Alignment locationchr3:291181..293289 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, CCCH-type protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:291181..293289 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
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BLAST of NO03G00880 vs. NCBI_GenBank
Match: EWM29578.1 (Zinc finger, CCCH-type protein [Nannochloropsis gaditana])

HSP 1 Score: 201.1 bits (510), Expect = 1.200e-47
Identity = 139/334 (41.62%), Postives = 166/334 (49.70%), Query Frame = 0 
Query:   57 FGGRARDVQKEVKQVLNQLRWHLCEVAGVPFGSTQVFISTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWCRQWVREGHCDRKFCRHQHVLTLASVGAKPSLKSAGSMAPLRLVEGEDLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAVFVVLGREQVVWDKERPEVWEAYLATHTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLLRRGSSTDSFSSLLETDVKSDSSSLPSSFPPSLPQLAVTVGGNSFLNGWPSDVSRELLAHYLLPEECARCIATCRGWAERAGDEALWRHVLTQTFEWSLP 391
            FGGRARDV+KEVK  LNQLRWHLCE  GVPF S Q+++S+                                   RWCRQWVREG C+RK CR +HVLTLA +GA+PS KS+ SMAPL L+EGE++EA           XXXXXXXXXXXXXXX                 +RAVF+ +  +++VWDKERPEVWEA++                                    LR GSS  S          S   +    FPP          GN  L   P  + REL  HYL P  CARC+  CR WA RAGDE +WR+ L  TF  +LP
Sbjct:    7 FGGRARDVRKEVKHALNQLRWHLCEEIGVPFASIQLYVSS-----------ADYHNGNGVADDMGGGSDESGDTPRWCRQWVREGRCNRKRCRFKHVLTLAPIGARPSHKSSASMAPLLLLEGEEVEAV--LTAPSNASXXXXXXXXXXXXXXXNYTLVSSSSSTGQGPMLHRAVFLAVAGQRIVWDKERPEVWEAFVGACLQTVKEIDPCRNHPGITITKDRGHRVLSPI-DTLRHGSSEGSLK-------LSPEQTKVQDFPP-----RSYATGNGLLAFLPMGIVRELFVHYLSPSACARCVRVCRDWAIRAGDEDIWRYFLASTFGITLP 314
The following BLAST results are available for this feature:
BLAST of NO03G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29578.11.200e-4741.62Zinc finger, CCCH-type protein [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005831NSK005831Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00880.1NO03G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100006g22gene1103Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00880.1NO03G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00880 ID=NO03G00880|Name=NO03G00880|organism=Nannochloropsis oceanica|type=gene|length=2109bp
ATGAGCAGCACGAGCAGTAGTGGGGCCAGCTTCATCCCCATCAGCTCCTC
CCCCAGCAGCGTCAATCATTTCCTGCCGCCTCGCAAGCACTCCATCTCCG
GCTTCTCTCCTGCCTCTTCCGGTAGCAGCAATGGGAAACGACGTGGTAAC
AGTAGCAGCAGCCACAGTTTTGGGGGGCGGGCGCGGGATGTGCAGAAGGA
AGTGAAACAGGTCTTGAACCAGCTGCGGTGGCATTTGTGCGAAGTTGCCG
GTGTGCCGTTCGGGTCCACACAAGTGTTTATTTCGACACAGGGAAGCAGT
AGCAGTAGTAGCAGGAGTAGTAGTGGTGGTGGTGGTGGTGGAGGAGGAGG
AGAAGGGCTGGTCTTATGTGGAGAGGAAGAGGAAGAAGCTTCCCGCTGGT
GTCGACAGTGGGTGCGAGAGGGCCACTGTGACAGGAAGTTTTGCCGGCAC
CAGCATGTCCTTACACTGGCATCGGTAGGCGCGAAACCCTCCCTTAAATC
AGCCGGATCAATGGCGCCCCTTCGATTGGTCGAAGGAGAGGACCTCGAGG
CTGCCCTGGCCGCGGCTGCCTTCAGTGGAAGCGCCGGGGGAGGGAGTGGG
GCAGGAAGCAGCTGTATCAGCAGCAGCAGTGGCAATGGTGTGGCGCCTTC
TTCTTCGTTTGGAGGGGGCCCGCCGCCCTTGTACAGGGCTGTGTTTGTGG
TTTTAGGCAGGGAGCAGGTGGTGTGGGATAAGGAGAGGCCGGAGGTGTGG
GAGGCTTACTTGGCCACGCATACCAACGGCGGCACCAGCAACAGCAACAG
CAACAGCAGCAGCAGCAATAACAACAACAGCAATAATAGTGGTGCCTTCC
CTCCCCGTCCTCCGGGTTTGCTCCGTCGTGGCTCCTCCACCGATAGCTTC
TCCTCGCTCCTCGAGACCGACGTCAAGAGCGACTCCTCCTCCCTCCCTTC
CTCCTTTCCTCCCTCCCTCCCTCAACTCGCTGTGACCGTGGGAGGAAACA
GCTTCCTGAATGGCTGGCCGTCAGATGTGAGCAGGGAGCTCCTAGCTCAC
TACCTCCTCCCGGAAGAGTGTGCTAGATGCATTGCCACGTGTCGTGGCTG
GGCGGAGCGGGCGGGGGACGAGGCACTGTGGCGCCATGTTCTTACTCAGA
CTTTTGAGTGGTCTCTCCCTCCATTTCAAAGAATGGAAGTGGTAAAACCT
GTCCGCGCGGCTGCTGCTGCCGAGGTTGCTGTTGCTGCTGCTGCTGCCGG
CAATTCCTCACATGTTTCGCGGGAAGCAGTTGCTACAGTAGCAACGCCCA
GAGGACAGCTGCGACGGGTAGGCAATAGCAGCAGCTCCATTTGTTGTGAT
CTGAGCACATTGGCTCTCCAAGATGACGACGACGACCTCCTCGCTGCTTC
CCTCCTTGATACTCCTGCTTCGGCTGCTGCTGGTGGTGGGGAGGAGGAGG
ACTCGTTCCTCCGTCTGCGTCACCGAGACACGACCCCTCTCACTCCCTCC
CCACCACCAGGATCGGTCCGAGAGGTGGAAGAGGAGGGGAAGAGCAGCCG
CAGCAGCAGCAGCAGCAGTAGCAGTGGGGAGGAGATGTTTTCCACCCCCT
TTCATCACCCAAGGAGGGTTTACGGCCGTCTGCGACACGTATGCCGCAAC
GTGCGAGCACTGAAAGAGTGGGGCGGCACCGGCGGATATGGAGGTGGCCG
AGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGAAAGAGAAGGAATGT
TTTCGAGCAGCAGCATCCGTGATGGTGGCGGCAGCAACCTACCTTCCTCT
TCTCCCTCTTCCAACCTCTCCTCCTCCCCCTCCCCCATCTCGTCCATCTC
CCCTTACCTCCGCACTCCGGACACCCACGGCCTCCCGTTCAGTCCCCCCC
CCCGTCGTCCTCCTCCTCTCCCTCCCCCTCCCCCTCTCACCCCCCCGCCT
TCCTCTCCCCCGGCCTCACACACCTCGTCTCACGCTTCCACGGCCACGAC
CGAGGGTCGGTCATTGCCTTGCAGGTGGACGAAGACAAGAACCGCCTCAT
TTCTGGTGATATTGCCGGGTGTGTGCGTGTGTGGGAGCTGCATTCGGGGG
CGAAGCTAG
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protein sequence of NO03G00880.1

>NO03G00880.1-protein ID=NO03G00880.1-protein|Name=NO03G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=703bp
MSSTSSSGASFIPISSSPSSVNHFLPPRKHSISGFSPASSGSSNGKRRGN
SSSSHSFGGRARDVQKEVKQVLNQLRWHLCEVAGVPFGSTQVFISTQGSS
SSSSRSSSGGGGGGGGGEGLVLCGEEEEEASRWCRQWVREGHCDRKFCRH
QHVLTLASVGAKPSLKSAGSMAPLRLVEGEDLEAALAAAAFSGSAGGGSG
AGSSCISSSSGNGVAPSSSFGGGPPPLYRAVFVVLGREQVVWDKERPEVW
EAYLATHTNGGTSNSNSNSSSSNNNNSNNSGAFPPRPPGLLRRGSSTDSF
SSLLETDVKSDSSSLPSSFPPSLPQLAVTVGGNSFLNGWPSDVSRELLAH
YLLPEECARCIATCRGWAERAGDEALWRHVLTQTFEWSLPPFQRMEVVKP
VRAAAAAEVAVAAAAAGNSSHVSREAVATVATPRGQLRRVGNSSSSICCD
LSTLALQDDDDDLLAASLLDTPASAAAGGGEEEDSFLRLRHRDTTPLTPS
PPPGSVREVEEEGKSSRSSSSSSSSGEEMFSTPFHHPRRVYGRLRHVCRN
VRALKEWGGTGGYGGGRGGGGGGGGGGGEREGMFSSSSIRDGGGSNLPSS
SPSSNLSSSPSPISSISPYLRTPDTHGLPFSPPPRRPPPLPPPPPLTPPP
SSPPASHTSSHASTATTEGRSLPCRWTKTRTASFLVILPGVCVCGSCIRG
RS*
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Synonyms
Publications