NO03G00880.1, NO03G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00880.1
Unique NameNO03G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2109
Alignment locationchr3:291181..293289 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:291181..293289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00880.1 vs.
Match: EWM29578.1 (Zinc finger, CCCH-type protein [Nannochloropsis gaditana])

HSP 1 Score: 231.1 bits (588), Expect = 1.100e-56
Identity = 221/600 (36.83%), Postives = 294/600 (49.00%), Query Frame = 0 
Query:   57 FGGRARDVQKEVKQVLNQLRWHLCEVAGVPFGSTQVFISTQGSSSSSSRSSSGGGGGGGGGEGLVLCGEEEEEASRWCRQWVREGHCDRKFCRHQHVLTLASVGAKPSLKSAGSMAPLRLVEGEDLEAALAAAAFSGSAGGGSGAGSSCISSSSGNGVAPSSSFGGGPPPLYRAVFVVLGREQVVWDKERPEVWEAYLATHTNGGTSNSNSNSSSSNNNN----SNNSGAFPPRPPGLLRRGSSTDSFSSLLETDVKSDSSSLPSSFPPSLPQLAVTVGGNSFLNGWPSDVSRELLAHYLLPEECARCIATCRGWAERAGDEALWRHVLTQTFEWSLPPFQRMEVVKPVR-------AAAAAEVAVAAAAAGNSSHVSREAVATVATPRGQLRRVGNSSSSICCDLSTLALQDDDDDLLAASLLDTPASAAAGGGEEEDSFLRLRHRDTTPLTPSPPPGSVREVEEEGKS--SRSSSSSSSSGEEMFSTPFHHPRRVYGRLRHVCRNVRALKEWGGTGGYGGGRGGGGGGGGGGGERE----GMFSSSSIRDG----GGSNLPSSSPSSNLSSSPSPISSISPYLRTPDTHGLPFSPPPR 636
            FGGRARDV+KEVK  LNQLRWHLCE  GVPF S Q+++S+    + +  +   GGG            +E  +  RWCRQWVREG C+RK CR +HVLTLA +GA+PS KS+ SMAPL L+EGE++EA L A + + SAG GS  G S  S S+   V+ SSS G G P L+RAVF+ +  +++VWDKERPEVWEA++     G    +        N+     + + G     P   LR GSS  S          S   +    FPP          GN  L   P  + REL  HYL P  CARC+  CR WA RAGDE +WR+ L  TF  +LP                    +AA + A+   A  +S   + E  A   T R   RR  +++ ++ CDLSTLAL+ D ++L A +               EDSF     R T  +TP PP  + +E  E G++      +  + +G+ +    F HPR  YGR +HV  N  AL E               GG GG GER+    G+F  S +       G  + P  SP       P  +  +    R+  + G   SP PR
Sbjct:    7 FGGRARDVRKEVKHALNQLRWHLCEEIGVPFASIQLYVSSADYHNGNGVADDMGGGS-----------DESGDTPRWCRQWVREGRCNRKRCRFKHVLTLAPIGARPSHKSSASMAPLLLLEGEEVEAVLTAPS-NASAGAGSVGGGSGGSISNYTLVSSSSSTGQG-PMLHRAVFLAVAGQRIVWDKERPEVWEAFV-----GACLQTVKEIDPCRNHPGITITKDRGHRVLSPIDTLRHGSSEGSLK-------LSPEQTKVQDFPP-----RSYATGNGLLAFLPMGIVRELFVHYLSPSACARCVRVCRDWAIRAGDEDIWRYFLASTFGITLPRQSTTRTASKTGKEYQHTFPSAADDYALHCHAPPSSLFTTTEVDAGAFTMR---RR--HANEALFCDLSTLALEADGEELTACA-------------TAEDSF----SRGTVLVTP-PPQLAPKERGEIGENLCENEMAMQTGNGDIVCCAHFFHPRLEYGRWQHVYWNTEALAE-------------SAGGTGGNGERKRRERGVFCLSGLPHEEVAIGNRDAPGLSPLPR----PQQLDRLVSKGRSTSSPGASPSPHPR 536
The following BLAST results are available for this feature:
BLAST of NO03G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29578.11.100e-5636.83Zinc finger, CCCH-type protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00880NO03G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00880.1NO03G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00880.1.cds1NO03G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00880.1 ID=NO03G00880.1|Name=NO03G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp
ATGAGCAGCACGAGCAGTAGTGGGGCCAGCTTCATCCCCATCAGCTCCTC
CCCCAGCAGCGTCAATCATTTCCTGCCGCCTCGCAAGCACTCCATCTCCG
GCTTCTCTCCTGCCTCTTCCGGTAGCAGCAATGGGAAACGACGTGGTAAC
AGTAGCAGCAGCCACAGTTTTGGGGGGCGGGCGCGGGATGTGCAGAAGGA
AGTGAAACAGGTCTTGAACCAGCTGCGGTGGCATTTGTGCGAAGTTGCCG
GTGTGCCGTTCGGGTCCACACAAGTGTTTATTTCGACACAGGGAAGCAGT
AGCAGTAGTAGCAGGAGTAGTAGTGGTGGTGGTGGTGGTGGAGGAGGAGG
AGAAGGGCTGGTCTTATGTGGAGAGGAAGAGGAAGAAGCTTCCCGCTGGT
GTCGACAGTGGGTGCGAGAGGGCCACTGTGACAGGAAGTTTTGCCGGCAC
CAGCATGTCCTTACACTGGCATCGGTAGGCGCGAAACCCTCCCTTAAATC
AGCCGGATCAATGGCGCCCCTTCGATTGGTCGAAGGAGAGGACCTCGAGG
CTGCCCTGGCCGCGGCTGCCTTCAGTGGAAGCGCCGGGGGAGGGAGTGGG
GCAGGAAGCAGCTGTATCAGCAGCAGCAGTGGCAATGGTGTGGCGCCTTC
TTCTTCGTTTGGAGGGGGCCCGCCGCCCTTGTACAGGGCTGTGTTTGTGG
TTTTAGGCAGGGAGCAGGTGGTGTGGGATAAGGAGAGGCCGGAGGTGTGG
GAGGCTTACTTGGCCACGCATACCAACGGCGGCACCAGCAACAGCAACAG
CAACAGCAGCAGCAGCAATAACAACAACAGCAATAATAGTGGTGCCTTCC
CTCCCCGTCCTCCGGGTTTGCTCCGTCGTGGCTCCTCCACCGATAGCTTC
TCCTCGCTCCTCGAGACCGACGTCAAGAGCGACTCCTCCTCCCTCCCTTC
CTCCTTTCCTCCCTCCCTCCCTCAACTCGCTGTGACCGTGGGAGGAAACA
GCTTCCTGAATGGCTGGCCGTCAGATGTGAGCAGGGAGCTCCTAGCTCAC
TACCTCCTCCCGGAAGAGTGTGCTAGATGCATTGCCACGTGTCGTGGCTG
GGCGGAGCGGGCGGGGGACGAGGCACTGTGGCGCCATGTTCTTACTCAGA
CTTTTGAGTGGTCTCTCCCTCCATTTCAAAGAATGGAAGTGGTAAAACCT
GTCCGCGCGGCTGCTGCTGCCGAGGTTGCTGTTGCTGCTGCTGCTGCCGG
CAATTCCTCACATGTTTCGCGGGAAGCAGTTGCTACAGTAGCAACGCCCA
GAGGACAGCTGCGACGGGTAGGCAATAGCAGCAGCTCCATTTGTTGTGAT
CTGAGCACATTGGCTCTCCAAGATGACGACGACGACCTCCTCGCTGCTTC
CCTCCTTGATACTCCTGCTTCGGCTGCTGCTGGTGGTGGGGAGGAGGAGG
ACTCGTTCCTCCGTCTGCGTCACCGAGACACGACCCCTCTCACTCCCTCC
CCACCACCAGGATCGGTCCGAGAGGTGGAAGAGGAGGGGAAGAGCAGCCG
CAGCAGCAGCAGCAGCAGTAGCAGTGGGGAGGAGATGTTTTCCACCCCCT
TTCATCACCCAAGGAGGGTTTACGGCCGTCTGCGACACGTATGCCGCAAC
GTGCGAGCACTGAAAGAGTGGGGCGGCACCGGCGGATATGGAGGTGGCCG
AGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGAAAGAGAAGGAATGT
TTTCGAGCAGCAGCATCCGTGATGGTGGCGGCAGCAACCTACCTTCCTCT
TCTCCCTCTTCCAACCTCTCCTCCTCCCCCTCCCCCATCTCGTCCATCTC
CCCTTACCTCCGCACTCCGGACACCCACGGCCTCCCGTTCAGTCCCCCCC
CCCGTCGTCCTCCTCCTCTCCCTCCCCCTCCCCCTCTCACCCCCCCGCCT
TCCTCTCCCCCGGCCTCACACACCTCGTCTCACGCTTCCACGGCCACGAC
CGAGGGTCGGTCATTGCCTTGCAGGTGGACGAAGACAAGAACCGCCTCAT
TTCTGGTGATATTGCCGGGTGTGTGCGTGTGTGGGAGCTGCATTCGGGGG
CGAAGCTAG
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protein sequence of NO03G00880.1

>NO03G00880.1-protein ID=NO03G00880.1-protein|Name=NO03G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=703bp
MSSTSSSGASFIPISSSPSSVNHFLPPRKHSISGFSPASSGSSNGKRRGN
SSSSHSFGGRARDVQKEVKQVLNQLRWHLCEVAGVPFGSTQVFISTQGSS
SSSSRSSSGGGGGGGGGEGLVLCGEEEEEASRWCRQWVREGHCDRKFCRH
QHVLTLASVGAKPSLKSAGSMAPLRLVEGEDLEAALAAAAFSGSAGGGSG
AGSSCISSSSGNGVAPSSSFGGGPPPLYRAVFVVLGREQVVWDKERPEVW
EAYLATHTNGGTSNSNSNSSSSNNNNSNNSGAFPPRPPGLLRRGSSTDSF
SSLLETDVKSDSSSLPSSFPPSLPQLAVTVGGNSFLNGWPSDVSRELLAH
YLLPEECARCIATCRGWAERAGDEALWRHVLTQTFEWSLPPFQRMEVVKP
VRAAAAAEVAVAAAAAGNSSHVSREAVATVATPRGQLRRVGNSSSSICCD
LSTLALQDDDDDLLAASLLDTPASAAAGGGEEEDSFLRLRHRDTTPLTPS
PPPGSVREVEEEGKSSRSSSSSSSSGEEMFSTPFHHPRRVYGRLRHVCRN
VRALKEWGGTGGYGGGRGGGGGGGGGGGEREGMFSSSSIRDGGGSNLPSS
SPSSNLSSSPSPISSISPYLRTPDTHGLPFSPPPRRPPPLPPPPPLTPPP
SSPPASHTSSHASTATTEGRSLPCRWTKTRTASFLVILPGVCVCGSCIRG
RS*
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mRNA from alignment at chr3:291181..293289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00880.1 ID=NO03G00880.1|Name=NO03G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp|location=Sequence derived from alignment at chr3:291181..293289+ (Nannochloropsis oceanica)
ATGAGCAGCACGAGCAGTAGTGGGGCCAGCTTCATCCCCATCAGCTCCTC
CCCCAGCAGCGTCAATCATTTCCTGCCGCCTCGCAAGCACTCCATCTCCG
GCTTCTCTCCTGCCTCTTCCGGTAGCAGCAATGGGAAACGACGTGGTAAC
AGTAGCAGCAGCCACAGTTTTGGGGGGCGGGCGCGGGATGTGCAGAAGGA
AGTGAAACAGGTCTTGAACCAGCTGCGGTGGCATTTGTGCGAAGTTGCCG
GTGTGCCGTTCGGGTCCACACAAGTGTTTATTTCGACACAGGGAAGCAGT
AGCAGTAGTAGCAGGAGTAGTAGTGGTGGTGGTGGTGGTGGAGGAGGAGG
AGAAGGGCTGGTCTTATGTGGAGAGGAAGAGGAAGAAGCTTCCCGCTGGT
GTCGACAGTGGGTGCGAGAGGGCCACTGTGACAGGAAGTTTTGCCGGCAC
CAGCATGTCCTTACACTGGCATCGGTAGGCGCGAAACCCTCCCTTAAATC
AGCCGGATCAATGGCGCCCCTTCGATTGGTCGAAGGAGAGGACCTCGAGG
CTGCCCTGGCCGCGGCTGCCTTCAGTGGAAGCGCCGGGGGAGGGAGTGGG
GCAGGAAGCAGCTGTATCAGCAGCAGCAGTGGCAATGGTGTGGCGCCTTC
TTCTTCGTTTGGAGGGGGCCCGCCGCCCTTGTACAGGGCTGTGTTTGTGG
TTTTAGGCAGGGAGCAGGTGGTGTGGGATAAGGAGAGGCCGGAGGTGTGG
GAGGCTTACTTGGCCACGCATACCAACGGCGGCACCAGCAACAGCAACAG
CAACAGCAGCAGCAGCAATAACAACAACAGCAATAATAGTGGTGCCTTCC
CTCCCCGTCCTCCGGGTTTGCTCCGTCGTGGCTCCTCCACCGATAGCTTC
TCCTCGCTCCTCGAGACCGACGTCAAGAGCGACTCCTCCTCCCTCCCTTC
CTCCTTTCCTCCCTCCCTCCCTCAACTCGCTGTGACCGTGGGAGGAAACA
GCTTCCTGAATGGCTGGCCGTCAGATGTGAGCAGGGAGCTCCTAGCTCAC
TACCTCCTCCCGGAAGAGTGTGCTAGATGCATTGCCACGTGTCGTGGCTG
GGCGGAGCGGGCGGGGGACGAGGCACTGTGGCGCCATGTTCTTACTCAGA
CTTTTGAGTGGTCTCTCCCTCCATTTCAAAGAATGGAAGTGGTAAAACCT
GTCCGCGCGGCTGCTGCTGCCGAGGTTGCTGTTGCTGCTGCTGCTGCCGG
CAATTCCTCACATGTTTCGCGGGAAGCAGTTGCTACAGTAGCAACGCCCA
GAGGACAGCTGCGACGGGTAGGCAATAGCAGCAGCTCCATTTGTTGTGAT
CTGAGCACATTGGCTCTCCAAGATGACGACGACGACCTCCTCGCTGCTTC
CCTCCTTGATACTCCTGCTTCGGCTGCTGCTGGTGGTGGGGAGGAGGAGG
ACTCGTTCCTCCGTCTGCGTCACCGAGACACGACCCCTCTCACTCCCTCC
CCACCACCAGGATCGGTCCGAGAGGTGGAAGAGGAGGGGAAGAGCAGCCG
CAGCAGCAGCAGCAGCAGTAGCAGTGGGGAGGAGATGTTTTCCACCCCCT
TTCATCACCCAAGGAGGGTTTACGGCCGTCTGCGACACGTATGCCGCAAC
GTGCGAGCACTGAAAGAGTGGGGCGGCACCGGCGGATATGGAGGTGGCCG
AGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGAAAGAGAAGGAATGT
TTTCGAGCAGCAGCATCCGTGATGGTGGCGGCAGCAACCTACCTTCCTCT
TCTCCCTCTTCCAACCTCTCCTCCTCCCCCTCCCCCATCTCGTCCATCTC
CCCTTACCTCCGCACTCCGGACACCCACGGCCTCCCGTTCAGTCCCCCCC
CCCGTCGTCCTCCTCCTCTCCCTCCCCCTCCCCCTCTCACCCCCCCGCCT
TCCTCTCCCCCGGCCTCACACACCTCGTCTCACGCTTCCACGGCCACGAC
CGAGGGTCGGTCATTGCCTTGCAGGTGGACGAAGACAAGAACCGCCTCAT
TTCTGGTGATATTGCCGGGTGTGTGCGTGTGTGGGAGCTGCATTCGGGGG
CGAAGCTAG
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Coding sequence (CDS) from alignment at chr3:291181..293289+

>NO03G00880.1 ID=NO03G00880.1|Name=NO03G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=2109bp|location=Sequence derived from alignment at chr3:291181..293289+ (Nannochloropsis oceanica)
ATGAGCAGCACGAGCAGTAGTGGGGCCAGCTTCATCCCCATCAGCTCCTC
CCCCAGCAGCGTCAATCATTTCCTGCCGCCTCGCAAGCACTCCATCTCCG
GCTTCTCTCCTGCCTCTTCCGGTAGCAGCAATGGGAAACGACGTGGTAAC
AGTAGCAGCAGCCACAGTTTTGGGGGGCGGGCGCGGGATGTGCAGAAGGA
AGTGAAACAGGTCTTGAACCAGCTGCGGTGGCATTTGTGCGAAGTTGCCG
GTGTGCCGTTCGGGTCCACACAAGTGTTTATTTCGACACAGGGAAGCAGT
AGCAGTAGTAGCAGGAGTAGTAGTGGTGGTGGTGGTGGTGGAGGAGGAGG
AGAAGGGCTGGTCTTATGTGGAGAGGAAGAGGAAGAAGCTTCCCGCTGGT
GTCGACAGTGGGTGCGAGAGGGCCACTGTGACAGGAAGTTTTGCCGGCAC
CAGCATGTCCTTACACTGGCATCGGTAGGCGCGAAACCCTCCCTTAAATC
AGCCGGATCAATGGCGCCCCTTCGATTGGTCGAAGGAGAGGACCTCGAGG
CTGCCCTGGCCGCGGCTGCCTTCAGTGGAAGCGCCGGGGGAGGGAGTGGG
GCAGGAAGCAGCTGTATCAGCAGCAGCAGTGGCAATGGTGTGGCGCCTTC
TTCTTCGTTTGGAGGGGGCCCGCCGCCCTTGTACAGGGCTGTGTTTGTGG
TTTTAGGCAGGGAGCAGGTGGTGTGGGATAAGGAGAGGCCGGAGGTGTGG
GAGGCTTACTTGGCCACGCATACCAACGGCGGCACCAGCAACAGCAACAG
CAACAGCAGCAGCAGCAATAACAACAACAGCAATAATAGTGGTGCCTTCC
CTCCCCGTCCTCCGGGTTTGCTCCGTCGTGGCTCCTCCACCGATAGCTTC
TCCTCGCTCCTCGAGACCGACGTCAAGAGCGACTCCTCCTCCCTCCCTTC
CTCCTTTCCTCCCTCCCTCCCTCAACTCGCTGTGACCGTGGGAGGAAACA
GCTTCCTGAATGGCTGGCCGTCAGATGTGAGCAGGGAGCTCCTAGCTCAC
TACCTCCTCCCGGAAGAGTGTGCTAGATGCATTGCCACGTGTCGTGGCTG
GGCGGAGCGGGCGGGGGACGAGGCACTGTGGCGCCATGTTCTTACTCAGA
CTTTTGAGTGGTCTCTCCCTCCATTTCAAAGAATGGAAGTGGTAAAACCT
GTCCGCGCGGCTGCTGCTGCCGAGGTTGCTGTTGCTGCTGCTGCTGCCGG
CAATTCCTCACATGTTTCGCGGGAAGCAGTTGCTACAGTAGCAACGCCCA
GAGGACAGCTGCGACGGGTAGGCAATAGCAGCAGCTCCATTTGTTGTGAT
CTGAGCACATTGGCTCTCCAAGATGACGACGACGACCTCCTCGCTGCTTC
CCTCCTTGATACTCCTGCTTCGGCTGCTGCTGGTGGTGGGGAGGAGGAGG
ACTCGTTCCTCCGTCTGCGTCACCGAGACACGACCCCTCTCACTCCCTCC
CCACCACCAGGATCGGTCCGAGAGGTGGAAGAGGAGGGGAAGAGCAGCCG
CAGCAGCAGCAGCAGCAGTAGCAGTGGGGAGGAGATGTTTTCCACCCCCT
TTCATCACCCAAGGAGGGTTTACGGCCGTCTGCGACACGTATGCCGCAAC
GTGCGAGCACTGAAAGAGTGGGGCGGCACCGGCGGATATGGAGGTGGCCG
AGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGAAAGAGAAGGAATGT
TTTCGAGCAGCAGCATCCGTGATGGTGGCGGCAGCAACCTACCTTCCTCT
TCTCCCTCTTCCAACCTCTCCTCCTCCCCCTCCCCCATCTCGTCCATCTC
CCCTTACCTCCGCACTCCGGACACCCACGGCCTCCCGTTCAGTCCCCCCC
CCCGTCGTCCTCCTCCTCTCCCTCCCCCTCCCCCTCTCACCCCCCCGCCT
TCCTCTCCCCCGGCCTCACACACCTCGTCTCACGCTTCCACGGCCACGAC
CGAGGGTCGGTCATTGCCTTGCAGGTGGACGAAGACAAGAACCGCCTCAT
TTCTGGTGATATTGCCGGGTGTGTGCGTGTGTGGGAGCTGCATTCGGGGG
CGAAGCTAG
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Synonyms
Publications