NO03G00700, NO03G00700 (gene) Nannochloropsis oceanica

Overview
NameNO03G00700
Unique NameNO03G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2467
Alignment locationchr3:226128..228594 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:226128..228594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G00700 vs. NCBI_GenBank
Match: EWM30005.1 (hypothetical protein Naga_100977g1 [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 2.500e-44
Identity = 121/290 (41.72%), Postives = 159/290 (54.83%), Query Frame = 0 
Query:   13 LGLTALVRQPVEGTHVEAILGIVASLEGHSVRTLECRRRDGTTFTSSLRSLHLQDEGSIVKLSLWGQRLADEAGGRLRKGDLLLATHVGIDRFMGEKGFKASGRRPQLTVIPSRAEAPRLLQRAVCQGREVEGDREERLELYRSLLARAEALWHWKEVEDMRQADRERQAARRPTAMVGGGGEGGIRGREGXXXXXXXXXXXKLRGRADIESXXXXXXXXXXXXXXXXXXXIVREWQWRTRAVREGGEQNGGGGRVIVFKLVDARGVGHVLEFPEEMEGVGQLECALQRR 303
            + LT  VRQ V+G     I+GIV S +    RTLECR+RDG+ FTS LR+L++QDE  +VKLSLWG+RLA+  G RL  GDL+L +H  +DRF+G KGFKASG    + V+P+R+ APRL++  + Q    + D E     YR+LL R EA+W W+EVE++R+A  + Q   R     GG  EG   GRE            ++ GR                         VR W+W     R    + GG GR   F++VD  GV HVLE  E +EGV  L  AL RR
Sbjct:    8 MDLTTFVRQRVDGASGRLIVGIVTS-KDMEARTLECRKRDGSMFTSYLRALYMQDERGVVKLSLWGRRLAETVGSRLNIGDLILVSHATVDRFLGVKGFKASGLHSHVVVVPNRSHAPRLIRSMLTQDAWSQEDEES----YRALLRRVEAVWQWREVEELRRAGEKEQRNER----AGGFDEGLRMGRE----------DGRVEGR-------------------------VRRWEWSPGNARR--TEGGGKGR---FEVVDEVGVVHVLELTESVEGVSALVDALTRR 248
The following BLAST results are available for this feature:
BLAST of NO03G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30005.12.500e-4441.72hypothetical protein Naga_100977g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR051ngnoR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005892NSK005892Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00700.1NO03G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100977g1gene641Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00700.1NO03G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00700 ID=NO03G00700|Name=NO03G00700|organism=Nannochloropsis oceanica|type=gene|length=2467bp
ATGGACTgtacgttgcttttttttttaatttaaaaagaggcatcgcgtcg
gcaggccgtttggccgatgaccgagtagcttcggctcccggcagacagtt
tattttacgtctgtcagtggccctgtccccacggggtacatcgcaccgcg
cctcatgatctctctcattttccattctcccccacattttaaaggccttg
gccagacctgagagtggtaccaaccgccgcgtcagtccacacagcccgtt
taccctcttgatccttaaccgcagTGGCAATATCGCGCCAGTACGACCAC
GGCCTGGGCCTGACGGCCTTGGTCCGCCAGCCCGTCGAAGGCACACACGT
GGAGGCCATTCTTGGCATTGTGGCGTCCTTGGAAGGCCACTCGGTCCGCA
CTCTAGAATGCCGTCGACGGGATGGAACTACTTTTACGTCGTCCCTGCGC
TCCCTCCATTTGCAAGACGAAGGCAGCATCGTCAAACTCTCTCTCTGGGG
CCAGCGCTTGGCGGACGAGGCGGGCGGACGCTTGCGCAAGGGAGATTTAC
TCCTTGCCACGCATGTGGGGATAGATCGCTTTATGGGCGAGAAGGGGTTC
AAAGCCTCCGGAAGGCGACCTCAACTAACAGTCATCCCCAGCCGGGCCGA
AGCTCCTCGCCTACTGCAGCGTGCTGTGTGTCAGGGTAGAGAAGTGGAAG
GAGATAGGGAAGAGCGGTTGGAGCTGTACCGTTCGCTGTTGGCAAGGGCC
GAAGCGTTGTGGCATTGGAAGGAGGTGGAGGACATGCGTCAGGCAGATAG
AGAAAGACAGGCAGCTCGACGCCCGACGGCGATGGTGGGAGGAGGAGGAG
AAGGAGGAATACGAGGAAGAGAAGGGGGAGGAAGGGAAAAAAGTGGCGGT
TACGAAGGAAAGCTTCGGGGGCGAGCTGACATTGAATCGAGTGGAGGGGG
TTACGAAGGATTGATGGTGGGGAGGGAGGATGGGGAAGTGAGGGGGATAG
TGCGTGAGTGGCAGTGGCGGACTCGGGCAGTAAGAGAAGGAGGGGAACAG
AATGGAGGGGGAGGGAGGGTGATAGTTTTTAAGCTGGTGGATGCAAGAGG
GGTGGGCCATGTCTTAGAGTTTCCGGAAGAGATGGAGGGGGTGGGGCAGC
TGGAATGTGCGTTACAGAGGAGGGATGCGTTGAGAAGGATGGTGGGGGAG
GAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGTTAGGGGAGATGATGGA
GGAGGAGGAGGATGAGGAGGATGAAGGGGGGAAGGTGCAGGTTGTTGTGT
CAAATGTGGGGTGTGTAGTGTTGGCAGGGGGGATGATGGCCCCCACGCAG
ACGGCGAAGACGTGCCTgtatgtggagggaacgagggagcaggacaagga
ggggcggaggacggaacgagagggggttaggagaaagaggaggagaaaaa
tggagtcggtgcgagttaaagtgcagacggtgcgagaggcatgggtactg
ttgcatccttccgctcctccccctttcccatctgctccacctgcttcccc
tcccactcttccttctgctcctaccgctgaaccacagAAGCAGGAGGAGC
AGCAGCAGCAGCAACAGCAACAGTACCCGCCACAAGAGGATCATCAGGAT
CAAGAGGGTAAGGAGGAGCCATTATCGCCTAGAGCACCCGGCAAGCCCCT
GGTTCTGGTGGGTACGGTGGTCGGTGTCTACATCCCTGCCGATGAAGGAG
GGAAGGAGGGAGGGAGGGAGGGAGGGAGAGGAGCAGTGTCTGCCGGAAGT
GGGAGAGATGGCGGCTGTGCTTGTGAAACCAAAACCGAGGATGGATGCCT
TGGGCGAGTTGGAGGAAGGGGAGGATATCAGAAGAGAGGAAAGAGGAAAC
AAATGGGTGTACCGCGACTTGATCTTGCTTGTGGCCGACCCCCCTTCCTC
AGCCCCTTCCTCCCTCCCGTCCTCCTCCTCCTTCTCCTCCTCTTCCTCCA
CCTCTCCTTCCTTCTCACCGTTGCCACGACGAGAACTACGTGTGCGCGTA
AAGGACGCCTGCCTTCAACCCCTCGTGGGACATATTCCTGCCGCTCGACT
CGTAGAGGAAGCTCAGGCTGACGCTGATGGGAAGGGAGGGAGGGAGGGAG
GGAAGAGGCGACACAAGACCCTTCATACGACAGCCCAGCCTTTTTTTTAC
ACAACGTGGGTGCGCCGGGCACTGCTTGCTCTGGCCTCTCCCTCCAATCC
CCCCTGGAAGCTTACTACGCGGGTGCGGGCTATTGGGGGAGGAAAAGAGG
AAAGGACGAGGGAGGAGGGTGGCGGCGATGTCTCGGTGCCCCATTCTACG
ATGATCAGTACGGTGATGGAGGAACCAAAACAGAGGGCAGAGCTATTGCT
GGTACATGCTGCCGTTGCGCCACCTTTGGCCGTGGGGCACGGGGAAGGAG
AGGAGAAGAGAGGATAA
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protein sequence of NO03G00700.1

>NO03G00700.1-protein ID=NO03G00700.1-protein|Name=NO03G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=660bp
MDLAISRQYDHGLGLTALVRQPVEGTHVEAILGIVASLEGHSVRTLECRR
RDGTTFTSSLRSLHLQDEGSIVKLSLWGQRLADEAGGRLRKGDLLLATHV
GIDRFMGEKGFKASGRRPQLTVIPSRAEAPRLLQRAVCQGREVEGDREER
LELYRSLLARAEALWHWKEVEDMRQADRERQAARRPTAMVGGGGEGGIRG
REGGGREKSGGYEGKLRGRADIESSGGGYEGLMVGREDGEVRGIVREWQW
RTRAVREGGEQNGGGGRVIVFKLVDARGVGHVLEFPEEMEGVGQLECALQ
RRDALRRMVGEEEEEEEEAEEELGEMMEEEEDEEDEGGKVQVVVSNVGCV
VLAGGMMAPTQTAKTCLSRRSSSSSNSNSTRHKRIIRIKRVRRSHYRLEH
PASPWFWWVRWSVSTSLPMKEGRREGGREGEEQCLPEVGEMAAVLVKPKP
RMDALGELEEGEDIRREERGNKWVYRDLILLVADPPSSAPSSLPSSSSFS
SSSSTSPSFSPLPRRELRVRVKDACLQPLVGHIPAARLVEEAQADADGKG
GREGGKRRHKTLHTTAQPFFYTTWVRRALLALASPSNPPWKLTTRVRAIG
GGKEERTREEGGGDVSVPHSTMISTVMEEPKQRAELLLVHAAVAPPLAVG
HGEGEEKRG*
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Synonyms
Publications