NO03G00700.1, NO03G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00700.1
Unique NameNO03G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1980
Alignment locationchr3:226128..228594 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:226128..228594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00700.1 vs.
Match: EWM30005.1 (hypothetical protein Naga_100977g1 [Nannochloropsis gaditana])

HSP 1 Score: 172.2 bits (435), Expect = 5.500e-39
Identity = 162/463 (34.99%), Postives = 219/463 (47.30%), Query Frame = 0 
Query:   13 LGLTALVRQPVEGTHVEAILGIVASLEGHSVRTLECRRRDGTTFTSSLRSLHLQDEGSIVKLSLWGQRLADEAGGRLRKGDLLLATHVGIDRFMGEKGFKASGRRPQLTVIPSRAEAPRLLQRAVCQGREVEGDREERLELYRSLLARAEALWHWKEVEDMRQADRERQAARRPTAMVGGGGEGGIRGREGGGREKSGGYEGKLRGRADIESSGGGYEGLMVGREDGEVRGIVREWQWRTRAVREGGEQNGGGGRVIVFKLVDARGVGHVLEFPEEMEGVGQLECALQRRDALRRMVGEEEEEEEEAEEELGEMMEEEEDEEDEGGKVQVVVSNVGCVVLAGGMMAPTQTAKTCLSRRSSSSSNSNSTRHKRIIRIKRVRRSHYRLEHPASPWFWWVRWSVSTSLPMKEGRREGGR----EGEEQCLPEVGEMAAVLVKPKPRMDALGELEEGEDIRREERGN 472
            + LT  VRQ V+G     I+GIV S +  + RTLECR+RDG+ FTS LR+L++QDE  +VKLSLWG+RLA+  G RL  GDL+L +H  +DRF+G KGFKASG    + V+P+R+ APRL++  + Q    + D E     YR+ L R         VE + Q  RE +  RR              G +    E++GG++                EGL +GREDG V G VR W+W     R    + GG GR   F++VD  GV HVLE  E +EGV  L  AL RR        ++ E  EEAE            EE EGG+  V   N+G  V  GG + P    KT                  R++R+ R RR   R                      + G+ EGGR    +   + + E G  +A L  P       G  ++GE+ R E  G+
Sbjct:    8 MDLTTFVRQRVDGASGRLIVGIVTSKDMEA-RTLECRKRDGSMFTSYLRALYMQDERGVVKLSLWGRRLAETVGSRLNIGDLILVSHATVDRFLGVKGFKASGLHSHVVVVPNRSHAPRLIRSMLTQDAWSQEDEES----YRA-LLR--------RVEAVWQW-REVEELRRA-------------GEKEQRNERAGGFD----------------EGLRMGREDGRVEGRVRRWEWSPGNARR--TEGGGKGR---FEVVDEVGVVHVLELTESVEGVSALVDALTRR--------KDAEWGEEAE------------EEGEGGEA-VRFENLGSAVGRGGFLLPVVVEKT------------------RVLRLPRDRRVRSR----------------------RTGQGEGGRVLSVQEARELVEEEGGKSAWL--PADDKGGQGRGDDGEEGRLERVGS 358
The following BLAST results are available for this feature:
BLAST of NO03G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30005.15.500e-3934.99hypothetical protein Naga_100977g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00700NO03G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00700.1NO03G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00700.1.cds1NO03G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00700.1.cds2NO03G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00700.1.cds3NO03G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00700.1 ID=NO03G00700.1|Name=NO03G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp
ATGGACTTGGCAATATCGCGCCAGTACGACCACGGCCTGGGCCTGACGGC
CTTGGTCCGCCAGCCCGTCGAAGGCACACACGTGGAGGCCATTCTTGGCA
TTGTGGCGTCCTTGGAAGGCCACTCGGTCCGCACTCTAGAATGCCGTCGA
CGGGATGGAACTACTTTTACGTCGTCCCTGCGCTCCCTCCATTTGCAAGA
CGAAGGCAGCATCGTCAAACTCTCTCTCTGGGGCCAGCGCTTGGCGGACG
AGGCGGGCGGACGCTTGCGCAAGGGAGATTTACTCCTTGCCACGCATGTG
GGGATAGATCGCTTTATGGGCGAGAAGGGGTTCAAAGCCTCCGGAAGGCG
ACCTCAACTAACAGTCATCCCCAGCCGGGCCGAAGCTCCTCGCCTACTGC
AGCGTGCTGTGTGTCAGGGTAGAGAAGTGGAAGGAGATAGGGAAGAGCGG
TTGGAGCTGTACCGTTCGCTGTTGGCAAGGGCCGAAGCGTTGTGGCATTG
GAAGGAGGTGGAGGACATGCGTCAGGCAGATAGAGAAAGACAGGCAGCTC
GACGCCCGACGGCGATGGTGGGAGGAGGAGGAGAAGGAGGAATACGAGGA
AGAGAAGGGGGAGGAAGGGAAAAAAGTGGCGGTTACGAAGGAAAGCTTCG
GGGGCGAGCTGACATTGAATCGAGTGGAGGGGGTTACGAAGGATTGATGG
TGGGGAGGGAGGATGGGGAAGTGAGGGGGATAGTGCGTGAGTGGCAGTGG
CGGACTCGGGCAGTAAGAGAAGGAGGGGAACAGAATGGAGGGGGAGGGAG
GGTGATAGTTTTTAAGCTGGTGGATGCAAGAGGGGTGGGCCATGTCTTAG
AGTTTCCGGAAGAGATGGAGGGGGTGGGGCAGCTGGAATGTGCGTTACAG
AGGAGGGATGCGTTGAGAAGGATGGTGGGGGAGGAGGAGGAGGAGGAGGA
GGAGGCGGAGGAGGAGTTAGGGGAGATGATGGAGGAGGAGGAGGATGAGG
AGGATGAAGGGGGGAAGGTGCAGGTTGTTGTGTCAAATGTGGGGTGTGTA
GTGTTGGCAGGGGGGATGATGGCCCCCACGCAGACGGCGAAGACGTGCCT
AAGCAGGAGGAGCAGCAGCAGCAGCAACAGCAACAGTACCCGCCACAAGA
GGATCATCAGGATCAAGAGGGTAAGGAGGAGCCATTATCGCCTAGAGCAC
CCGGCAAGCCCCTGGTTCTGGTGGGTACGGTGGTCGGTGTCTACATCCCT
GCCGATGAAGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGAGGAGCAGT
GTCTGCCGGAAGTGGGAGAGATGGCGGCTGTGCTTGTGAAACCAAAACCG
AGGATGGATGCCTTGGGCGAGTTGGAGGAAGGGGAGGATATCAGAAGAGA
GGAAAGAGGAAACAAATGGGTGTACCGCGACTTGATCTTGCTTGTGGCCG
ACCCCCCTTCCTCAGCCCCTTCCTCCCTCCCGTCCTCCTCCTCCTTCTCC
TCCTCTTCCTCCACCTCTCCTTCCTTCTCACCGTTGCCACGACGAGAACT
ACGTGTGCGCGTAAAGGACGCCTGCCTTCAACCCCTCGTGGGACATATTC
CTGCCGCTCGACTCGTAGAGGAAGCTCAGGCTGACGCTGATGGGAAGGGA
GGGAGGGAGGGAGGGAAGAGGCGACACAAGACCCTTCATACGACAGCCCA
GCCTTTTTTTTACACAACGTGGGTGCGCCGGGCACTGCTTGCTCTGGCCT
CTCCCTCCAATCCCCCCTGGAAGCTTACTACGCGGGTGCGGGCTATTGGG
GGAGGAAAAGAGGAAAGGACGAGGGAGGAGGGTGGCGGCGATGTCTCGGT
GCCCCATTCTACGATGATCAGTACGGTGATGGAGGAACCAAAACAGAGGG
CAGAGCTATTGCTGGTACATGCTGCCGTTGCGCCACCTTTGGCCGTGGGG
CACGGGGAAGGAGAGGAGAAGAGAGGATAA
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protein sequence of NO03G00700.1

>NO03G00700.1-protein ID=NO03G00700.1-protein|Name=NO03G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=660bp
MDLAISRQYDHGLGLTALVRQPVEGTHVEAILGIVASLEGHSVRTLECRR
RDGTTFTSSLRSLHLQDEGSIVKLSLWGQRLADEAGGRLRKGDLLLATHV
GIDRFMGEKGFKASGRRPQLTVIPSRAEAPRLLQRAVCQGREVEGDREER
LELYRSLLARAEALWHWKEVEDMRQADRERQAARRPTAMVGGGGEGGIRG
REGGGREKSGGYEGKLRGRADIESSGGGYEGLMVGREDGEVRGIVREWQW
RTRAVREGGEQNGGGGRVIVFKLVDARGVGHVLEFPEEMEGVGQLECALQ
RRDALRRMVGEEEEEEEEAEEELGEMMEEEEDEEDEGGKVQVVVSNVGCV
VLAGGMMAPTQTAKTCLSRRSSSSSNSNSTRHKRIIRIKRVRRSHYRLEH
PASPWFWWVRWSVSTSLPMKEGRREGGREGEEQCLPEVGEMAAVLVKPKP
RMDALGELEEGEDIRREERGNKWVYRDLILLVADPPSSAPSSLPSSSSFS
SSSSTSPSFSPLPRRELRVRVKDACLQPLVGHIPAARLVEEAQADADGKG
GREGGKRRHKTLHTTAQPFFYTTWVRRALLALASPSNPPWKLTTRVRAIG
GGKEERTREEGGGDVSVPHSTMISTVMEEPKQRAELLLVHAAVAPPLAVG
HGEGEEKRG*
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mRNA from alignment at chr3:226128..228594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00700.1 ID=NO03G00700.1|Name=NO03G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2467bp|location=Sequence derived from alignment at chr3:226128..228594- (Nannochloropsis oceanica)
ATGGACTGTACGTTGCTTTTTTTTTTAATTTAAAAAGAGGCATCGCGTCG
GCAGGCCGTTTGGCCGATGACCGAGTAGCTTCGGCTCCCGGCAGACAGTT
TATTTTACGTCTGTCAGTGGCCCTGTCCCCACGGGGTACATCGCACCGCG
CCTCATGATCTCTCTCATTTTCCATTCTCCCCCACATTTTAAAGGCCTTG
GCCAGACCTGAGAGTGGTACCAACCGCCGCGTCAGTCCACACAGCCCGTT
TACCCTCTTGATCCTTAACCGCAGTGGCAATATCGCGCCAGTACGACCAC
GGCCTGGGCCTGACGGCCTTGGTCCGCCAGCCCGTCGAAGGCACACACGT
GGAGGCCATTCTTGGCATTGTGGCGTCCTTGGAAGGCCACTCGGTCCGCA
CTCTAGAATGCCGTCGACGGGATGGAACTACTTTTACGTCGTCCCTGCGC
TCCCTCCATTTGCAAGACGAAGGCAGCATCGTCAAACTCTCTCTCTGGGG
CCAGCGCTTGGCGGACGAGGCGGGCGGACGCTTGCGCAAGGGAGATTTAC
TCCTTGCCACGCATGTGGGGATAGATCGCTTTATGGGCGAGAAGGGGTTC
AAAGCCTCCGGAAGGCGACCTCAACTAACAGTCATCCCCAGCCGGGCCGA
AGCTCCTCGCCTACTGCAGCGTGCTGTGTGTCAGGGTAGAGAAGTGGAAG
GAGATAGGGAAGAGCGGTTGGAGCTGTACCGTTCGCTGTTGGCAAGGGCC
GAAGCGTTGTGGCATTGGAAGGAGGTGGAGGACATGCGTCAGGCAGATAG
AGAAAGACAGGCAGCTCGACGCCCGACGGCGATGGTGGGAGGAGGAGGAG
AAGGAGGAATACGAGGAAGAGAAGGGGGAGGAAGGGAAAAAAGTGGCGGT
TACGAAGGAAAGCTTCGGGGGCGAGCTGACATTGAATCGAGTGGAGGGGG
TTACGAAGGATTGATGGTGGGGAGGGAGGATGGGGAAGTGAGGGGGATAG
TGCGTGAGTGGCAGTGGCGGACTCGGGCAGTAAGAGAAGGAGGGGAACAG
AATGGAGGGGGAGGGAGGGTGATAGTTTTTAAGCTGGTGGATGCAAGAGG
GGTGGGCCATGTCTTAGAGTTTCCGGAAGAGATGGAGGGGGTGGGGCAGC
TGGAATGTGCGTTACAGAGGAGGGATGCGTTGAGAAGGATGGTGGGGGAG
GAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGTTAGGGGAGATGATGGA
GGAGGAGGAGGATGAGGAGGATGAAGGGGGGAAGGTGCAGGTTGTTGTGT
CAAATGTGGGGTGTGTAGTGTTGGCAGGGGGGATGATGGCCCCCACGCAG
ACGGCGAAGACGTGCCTGTATGTGGAGGGAACGAGGGAGCAGGACAAGGA
GGGGCGGAGGACGGAACGAGAGGGGGTTAGGAGAAAGAGGAGGAGAAAAA
TGGAGTCGGTGCGAGTTAAAGTGCAGACGGTGCGAGAGGCATGGGTACTG
TTGCATCCTTCCGCTCCTCCCCCTTTCCCATCTGCTCCACCTGCTTCCCC
TCCCACTCTTCCTTCTGCTCCTACCGCTGAACCACAGAAGCAGGAGGAGC
AGCAGCAGCAGCAACAGCAACAGTACCCGCCACAAGAGGATCATCAGGAT
CAAGAGGGTAAGGAGGAGCCATTATCGCCTAGAGCACCCGGCAAGCCCCT
GGTTCTGGTGGGTACGGTGGTCGGTGTCTACATCCCTGCCGATGAAGGAG
GGAAGGAGGGAGGGAGGGAGGGAGGGAGAGGAGCAGTGTCTGCCGGAAGT
GGGAGAGATGGCGGCTGTGCTTGTGAAACCAAAACCGAGGATGGATGCCT
TGGGCGAGTTGGAGGAAGGGGAGGATATCAGAAGAGAGGAAAGAGGAAAC
AAATGGGTGTACCGCGACTTGATCTTGCTTGTGGCCGACCCCCCTTCCTC
AGCCCCTTCCTCCCTCCCGTCCTCCTCCTCCTTCTCCTCCTCTTCCTCCA
CCTCTCCTTCCTTCTCACCGTTGCCACGACGAGAACTACGTGTGCGCGTA
AAGGACGCCTGCCTTCAACCCCTCGTGGGACATATTCCTGCCGCTCGACT
CGTAGAGGAAGCTCAGGCTGACGCTGATGGGAAGGGAGGGAGGGAGGGAG
GGAAGAGGCGACACAAGACCCTTCATACGACAGCCCAGCCTTTTTTTTAC
ACAACGTGGGTGCGCCGGGCACTGCTTGCTCTGGCCTCTCCCTCCAATCC
CCCCTGGAAGCTTACTACGCGGGTGCGGGCTATTGGGGGAGGAAAAGAGG
AAAGGACGAGGGAGGAGGGTGGCGGCGATGTCTCGGTGCCCCATTCTACG
ATGATCAGTACGGTGATGGAGGAACCAAAACAGAGGGCAGAGCTATTGCT
GGTACATGCTGCCGTTGCGCCACCTTTGGCCGTGGGGCACGGGGAAGGAG
AGGAGAAGAGAGGATAA
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Coding sequence (CDS) from alignment at chr3:226128..228594-

>NO03G00700.1 ID=NO03G00700.1|Name=NO03G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at chr3:226128..228594- (Nannochloropsis oceanica)
ATGGACTTGGCAATATCGCGCCAGTACGACCACGGCCTGGGCCTGACGGC
CTTGGTCCGCCAGCCCGTCGAAGGCACACACGTGGAGGCCATTCTTGGCA
TTGTGGCGTCCTTGGAAGGCCACTCGGTCCGCACTCTAGAATGCCGTCGA
CGGGATGGAACTACTTTTACGTCGTCCCTGCGCTCCCTCCATTTGCAAGA
CGAAGGCAGCATCGTCAAACTCTCTCTCTGGGGCCAGCGCTTGGCGGACG
AGGCGGGCGGACGCTTGCGCAAGGGAGATTTACTCCTTGCCACGCATGTG
GGGATAGATCGCTTTATGGGCGAGAAGGGGTTCAAAGCCTCCGGAAGGCG
ACCTCAACTAACAGTCATCCCCAGCCGGGCCGAAGCTCCTCGCCTACTGC
AGCGTGCTGTGTGTCAGGGTAGAGAAGTGGAAGGAGATAGGGAAGAGCGG
TTGGAGCTGTACCGTTCGCTGTTGGCAAGGGCCGAAGCGTTGTGGCATTG
GAAGGAGGTGGAGGACATGCGTCAGGCAGATAGAGAAAGACAGGCAGCTC
GACGCCCGACGGCGATGGTGGGAGGAGGAGGAGAAGGAGGAATACGAGGA
AGAGAAGGGGGAGGAAGGGAAAAAAGTGGCGGTTACGAAGGAAAGCTTCG
GGGGCGAGCTGACATTGAATCGAGTGGAGGGGGTTACGAAGGATTGATGG
TGGGGAGGGAGGATGGGGAAGTGAGGGGGATAGTGCGTGAGTGGCAGTGG
CGGACTCGGGCAGTAAGAGAAGGAGGGGAACAGAATGGAGGGGGAGGGAG
GGTGATAGTTTTTAAGCTGGTGGATGCAAGAGGGGTGGGCCATGTCTTAG
AGTTTCCGGAAGAGATGGAGGGGGTGGGGCAGCTGGAATGTGCGTTACAG
AGGAGGGATGCGTTGAGAAGGATGGTGGGGGAGGAGGAGGAGGAGGAGGA
GGAGGCGGAGGAGGAGTTAGGGGAGATGATGGAGGAGGAGGAGGATGAGG
AGGATGAAGGGGGGAAGGTGCAGGTTGTTGTGTCAAATGTGGGGTGTGTA
GTGTTGGCAGGGGGGATGATGGCCCCCACGCAGACGGCGAAGACGTGCCT
AAGCAGGAGGAGCAGCAGCAGCAGCAACAGCAACAGTACCCGCCACAAGA
GGATCATCAGGATCAAGAGGGTAAGGAGGAGCCATTATCGCCTAGAGCAC
CCGGCAAGCCCCTGGTTCTGGTGGGTACGGTGGTCGGTGTCTACATCCCT
GCCGATGAAGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGAGGAGCAGT
GTCTGCCGGAAGTGGGAGAGATGGCGGCTGTGCTTGTGAAACCAAAACCG
AGGATGGATGCCTTGGGCGAGTTGGAGGAAGGGGAGGATATCAGAAGAGA
GGAAAGAGGAAACAAATGGGTGTACCGCGACTTGATCTTGCTTGTGGCCG
ACCCCCCTTCCTCAGCCCCTTCCTCCCTCCCGTCCTCCTCCTCCTTCTCC
TCCTCTTCCTCCACCTCTCCTTCCTTCTCACCGTTGCCACGACGAGAACT
ACGTGTGCGCGTAAAGGACGCCTGCCTTCAACCCCTCGTGGGACATATTC
CTGCCGCTCGACTCGTAGAGGAAGCTCAGGCTGACGCTGATGGGAAGGGA
GGGAGGGAGGGAGGGAAGAGGCGACACAAGACCCTTCATACGACAGCCCA
GCCTTTTTTTTACACAACGTGGGTGCGCCGGGCACTGCTTGCTCTGGCCT
CTCCCTCCAATCCCCCCTGGAAGCTTACTACGCGGGTGCGGGCTATTGGG
GGAGGAAAAGAGGAAAGGACGAGGGAGGAGGGTGGCGGCGATGTCTCGGT
GCCCCATTCTACGATGATCAGTACGGTGATGGAGGAACCAAAACAGAGGG
CAGAGCTATTGCTGGTACATGCTGCCGTTGCGCCACCTTTGGCCGTGGGG
CACGGGGAAGGAGAGGAGAAGAGAGGATAA
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Synonyms
Publications