NO03G00660, NO03G00660 (gene) Nannochloropsis oceanica

Overview
NameNO03G00660
Unique NameNO03G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr3:213312..214844 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:213312..214844 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO03G00660 vs. NCBI_GenBank
Match: XP_005853515.1 (hypothetical protein NGA_0483400, partial [Nannochloropsis gaditana CCMP526] >EKU22847.1 hypothetical protein NGA_0483400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.1 bits (383), Expect = 4.500e-33
Identity = 89/131 (67.94%), Postives = 96/131 (73.28%), Query Frame = 0 
Query:   22 TTSSTSSLFSTDAVARSHTRTFRQAVQAEMHRLQHQEGLSRAAAVETLLARLTSAXXXXXXXXXXSSAKGKGVSTPEIQRVKECYNLTWEEARRALLVKAAVGQLRRRGWDASTALMELTARMAPLRVSSP 153
            T SS SSLF T  +ARS TR FRQAVQ EM RLQH +GL RAAAVE LLARLTS           S  K K V T E+  V ECY LT EEARRALLVK+A+GQLRR+GWDASTALMELTARM PLR+SSP
Sbjct:   26 TLSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLTSPDAPSNAVSTSSYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSP 156
[Close]
BLAST of NO03G00660 vs. NCBI_GenBank
Match: EWM30013.1 (hypothetical protein Naga_100802g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.5 bits (371), Expect = 1.100e-31
Identity = 86/129 (66.67%), Postives = 93/129 (72.09%), Query Frame = 0 
Query:   24 SSTSSLFSTDAVARSHTRTFRQAVQAEMHRLQHQEGLSRAAAVETLLARLTSAXXXXXXXXXXSSAKGKGVSTPEIQRVKECYNLTWEEARRALLVKAAVGQLRRRGWDASTALMELTARMAPLRVSSP 153
            SS SSLF T  +ARS TR FRQAVQ EM RLQH +GL RAAAVE LLARL S              K K V T E+  V ECY LT EEARRALLVK+A+GQLRR+GWDASTALMELTARM PLR+SSP
Sbjct:   26 SSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLNSPDAPLNAVSTSPYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSP 154
The following BLAST results are available for this feature:
BLAST of NO03G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853515.14.500e-3367.94hypothetical protein NGA_0483400, partial [Nannoch... [more]
EWM30013.11.100e-3166.67hypothetical protein Naga_100802g3 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR051ngnoR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005888NSK005888Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00660.1NO03G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100802g3gene633Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00660.1NO03G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00660 ID=NO03G00660|Name=NO03G00660|organism=Nannochloropsis oceanica|type=gene|length=1533bp
ATGGACGACAGCGTGGGTGGGGGAGGAAAGCAGGACACGCACGTGCCTTT
GGATTGGACCACGACCACGAGCAGCACTTCCTCTTTGTTTTCTACAGATG
CCGTGGCCCGCAGCCATACCCGCACCTTTCGCCAAGCCGTCCAAGCCGAG
ATGCACCGCTTGCAACACCAGGAAGGCCTCTCCCGTGCTGCCGCCGTCGA
GACCCTGCTAGCCCGCCTCACGTCCGCAACCAGCCCCCCTCCCTCCTCCT
CGTCCTTGTCCTCAGCCAAGGGAAAAGGTGTCTCGACCCCCGAGATCCAA
AGAGTGAAGGAGTGTTACAACCTGACCTGGGAAGAGGCCCGACGGGCTCT
GCTCGTTAAGGCGGCCGTCGGACAACTCAGACGCAGGGGATGGGACGCCT
CGACAGCTTTAATGGAGCTGACGGCACGTATGGCACCGCTGCGGGTGTCA
TCGCCGCCACCGCCACCATTACCGGCGGTGTCAGCCCTGGGAGCACCGTC
GTTATTGTCGGTGCTTCCCTCCTCTTCGAGGAGCAAAGAAGGGAGGGAAG
GAGGGAAAGGCGAGGGTGGGGTGGAGGGCGAGAAGGGCGTTGCAGGCAAA
GAATCCATCATAACAGGCAGAAGTGCCATGACTCAAACTGAGGCAGCAGG
GCAAGAGGGCGCGGAGAAGGACCAGCAGCAACGGCAGCAGCAGCAGCAGT
CGCCTCAAAGCAGGCGTGGTGAAAGGCGAAAGCGGCTGTCGTCCTTCTCT
TGTTCCCCCGAGGAAAAAGACGGGAAAGTGGGAGCAATCAAGCATGAGAC
GAGCAGCAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTTATCTGGGCGTGG
CGCCCGAGAGGAAGAAAAAGAAGTCTGCGGCCCCTACCGCCGTGGGCAGG
GAGTCCGTGGCGGATGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGT
AAAGGAGGAGGAAGAGGGGAAGGAGAGGGAAGAAGTGAAAGAGGTAGCCG
CCGTAGCAGCAATCGGGAAAGGAAGGAAGGAGGGGCGGACGAAGAAAACT
GCTGCTGCAAGAGTATCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGCAGC
AGCAGAGGGACGTGGAGGGAGGAAGCGGGCTTGGGCTGCGGAGGGTATGG
AGGTGGGAGGTAGGGGTGGAGGAGGCGATGGCATGGGACAGGACGGAGAG
GTGGGGGCTGAGCAGGTGCTTGAGGGGGGGAGGGAGGGGAGGGTGACCGA
GAAAGGGAGGAAGCGCCAGACGAGAAGAAGTGCGGCTACTAGCACCAGCA
CGACTTCATCGACGACGATGACGACCATCACAAGCAGCAACAACACCAGC
AACAGTACCAGCAGCAGCAACAGCAGCTGCACCCGTGGGAAGCGAGGGCG
AGGAGGGGCGGCAGTCGAGAAGGAGGTGGGGGGGGAGGAAGGGGAGGGTG
GGATGGAGGAAAGTGGGAACAGGCCCTTACGGCGGACGGCACGGGGGCGG
AAGAAAGATATTGCAGGAGTATTGGAGGGATGA
back to top

protein sequence of NO03G00660.1

>NO03G00660.1-protein ID=NO03G00660.1-protein|Name=NO03G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MDDSVGGGGKQDTHVPLDWTTTTSSTSSLFSTDAVARSHTRTFRQAVQAE
MHRLQHQEGLSRAAAVETLLARLTSATSPPPSSSSLSSAKGKGVSTPEIQ
RVKECYNLTWEEARRALLVKAAVGQLRRRGWDASTALMELTARMAPLRVS
SPPPPPLPAVSALGAPSLLSVLPSSSRSKEGREGGKGEGGVEGEKGVAGK
ESIITGRSAMTQTEAAGQEGAEKDQQQRQQQQQSPQSRRGERRKRLSSFS
CSPEEKDGKVGAIKHETSSSSSSSSGGGGYLGVAPERKKKKSAAPTAVGR
ESVADEEEEEGEEEEGVKEEEEGKEREEVKEVAAVAAIGKGRKEGRTKKT
AAARVSAAAVAAAVVAAAEGRGGRKRAWAAEGMEVGGRGGGGDGMGQDGE
VGAEQVLEGGREGRVTEKGRKRQTRRSAATSTSTTSSTTMTTITSSNNTS
NSTSSSNSSCTRGKRGRGGAAVEKEVGGEEGEGGMEESGNRPLRRTARGR
KKDIAGVLEG*
back to top
Synonyms
Publications