NO03G00660.1, NO03G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00660.1
Unique NameNO03G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr3:213312..214844 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:213312..214844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G00660.1 vs.
Match: XP_005853515.1 (hypothetical protein NGA_0483400, partial [Nannochloropsis gaditana CCMP526]; EKU22847.1 hypothetical protein NGA_0483400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 157.9 bits (398), Expect = 8.300e-35
Identity = 110/196 (56.12%), Postives = 128/196 (65.31%), Query Frame = 0 
Query:   22 TTSSTSSLFSTDAVARSHTRTFRQAVQAEMHRLQHQEGLSRAAAVETLLARLTSATSPPPSSSSLSSAKGKGVSTPEIQRVKECYNLTWEEARRALLVKAAVGQLRRRGWDASTALMELTARMAPLRVSSPPPPPLPAVSALGAPSLLSVLPSSSRSKEGREGGKGEGGVEGEKGVAGKE---SIITGRSAMTQTE 215
            T SS SSLF T  +ARS TR FRQAVQ EM RLQH +GL RAAAVE LLARLTS  +P  + S+ S  K K V T E+  V ECY LT EEARRALLVK+A+GQLRR+GWDASTALMELTARM PLR+SSP  P      A+    +  V+  ++  + G EGG G+  VE   G    E       GR+A TQTE
Sbjct:   26 TLSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLTSPDAPSNAVSTSSYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSPSSP------AVEPGWVREVVGEATSGRRGGEGGGGKQIVEEMNGGGASERKGMTHMGRTATTQTE 215
The following BLAST results are available for this feature:
BLAST of NO03G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853515.18.300e-3556.12hypothetical protein NGA_0483400, partial [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00660NO03G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00660.1NO03G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00660.1.cds1NO03G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00660.1 ID=NO03G00660.1|Name=NO03G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATGGACGACAGCGTGGGTGGGGGAGGAAAGCAGGACACGCACGTGCCTTT
GGATTGGACCACGACCACGAGCAGCACTTCCTCTTTGTTTTCTACAGATG
CCGTGGCCCGCAGCCATACCCGCACCTTTCGCCAAGCCGTCCAAGCCGAG
ATGCACCGCTTGCAACACCAGGAAGGCCTCTCCCGTGCTGCCGCCGTCGA
GACCCTGCTAGCCCGCCTCACGTCCGCAACCAGCCCCCCTCCCTCCTCCT
CGTCCTTGTCCTCAGCCAAGGGAAAAGGTGTCTCGACCCCCGAGATCCAA
AGAGTGAAGGAGTGTTACAACCTGACCTGGGAAGAGGCCCGACGGGCTCT
GCTCGTTAAGGCGGCCGTCGGACAACTCAGACGCAGGGGATGGGACGCCT
CGACAGCTTTAATGGAGCTGACGGCACGTATGGCACCGCTGCGGGTGTCA
TCGCCGCCACCGCCACCATTACCGGCGGTGTCAGCCCTGGGAGCACCGTC
GTTATTGTCGGTGCTTCCCTCCTCTTCGAGGAGCAAAGAAGGGAGGGAAG
GAGGGAAAGGCGAGGGTGGGGTGGAGGGCGAGAAGGGCGTTGCAGGCAAA
GAATCCATCATAACAGGCAGAAGTGCCATGACTCAAACTGAGGCAGCAGG
GCAAGAGGGCGCGGAGAAGGACCAGCAGCAACGGCAGCAGCAGCAGCAGT
CGCCTCAAAGCAGGCGTGGTGAAAGGCGAAAGCGGCTGTCGTCCTTCTCT
TGTTCCCCCGAGGAAAAAGACGGGAAAGTGGGAGCAATCAAGCATGAGAC
GAGCAGCAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTTATCTGGGCGTGG
CGCCCGAGAGGAAGAAAAAGAAGTCTGCGGCCCCTACCGCCGTGGGCAGG
GAGTCCGTGGCGGATGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGT
AAAGGAGGAGGAAGAGGGGAAGGAGAGGGAAGAAGTGAAAGAGGTAGCCG
CCGTAGCAGCAATCGGGAAAGGAAGGAAGGAGGGGCGGACGAAGAAAACT
GCTGCTGCAAGAGTATCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGCAGC
AGCAGAGGGACGTGGAGGGAGGAAGCGGGCTTGGGCTGCGGAGGGTATGG
AGGTGGGAGGTAGGGGTGGAGGAGGCGATGGCATGGGACAGGACGGAGAG
GTGGGGGCTGAGCAGGTGCTTGAGGGGGGGAGGGAGGGGAGGGTGACCGA
GAAAGGGAGGAAGCGCCAGACGAGAAGAAGTGCGGCTACTAGCACCAGCA
CGACTTCATCGACGACGATGACGACCATCACAAGCAGCAACAACACCAGC
AACAGTACCAGCAGCAGCAACAGCAGCTGCACCCGTGGGAAGCGAGGGCG
AGGAGGGGCGGCAGTCGAGAAGGAGGTGGGGGGGGAGGAAGGGGAGGGTG
GGATGGAGGAAAGTGGGAACAGGCCCTTACGGCGGACGGCACGGGGGCGG
AAGAAAGATATTGCAGGAGTATTGGAGGGATGA
back to top

protein sequence of NO03G00660.1

>NO03G00660.1-protein ID=NO03G00660.1-protein|Name=NO03G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MDDSVGGGGKQDTHVPLDWTTTTSSTSSLFSTDAVARSHTRTFRQAVQAE
MHRLQHQEGLSRAAAVETLLARLTSATSPPPSSSSLSSAKGKGVSTPEIQ
RVKECYNLTWEEARRALLVKAAVGQLRRRGWDASTALMELTARMAPLRVS
SPPPPPLPAVSALGAPSLLSVLPSSSRSKEGREGGKGEGGVEGEKGVAGK
ESIITGRSAMTQTEAAGQEGAEKDQQQRQQQQQSPQSRRGERRKRLSSFS
CSPEEKDGKVGAIKHETSSSSSSSSGGGGYLGVAPERKKKKSAAPTAVGR
ESVADEEEEEGEEEEGVKEEEEGKEREEVKEVAAVAAIGKGRKEGRTKKT
AAARVSAAAVAAAVVAAAEGRGGRKRAWAAEGMEVGGRGGGGDGMGQDGE
VGAEQVLEGGREGRVTEKGRKRQTRRSAATSTSTTSSTTMTTITSSNNTS
NSTSSSNSSCTRGKRGRGGAAVEKEVGGEEGEGGMEESGNRPLRRTARGR
KKDIAGVLEG*
back to top

mRNA from alignment at chr3:213312..214844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00660.1 ID=NO03G00660.1|Name=NO03G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr3:213312..214844- (Nannochloropsis oceanica)
ATGGACGACAGCGTGGGTGGGGGAGGAAAGCAGGACACGCACGTGCCTTT
GGATTGGACCACGACCACGAGCAGCACTTCCTCTTTGTTTTCTACAGATG
CCGTGGCCCGCAGCCATACCCGCACCTTTCGCCAAGCCGTCCAAGCCGAG
ATGCACCGCTTGCAACACCAGGAAGGCCTCTCCCGTGCTGCCGCCGTCGA
GACCCTGCTAGCCCGCCTCACGTCCGCAACCAGCCCCCCTCCCTCCTCCT
CGTCCTTGTCCTCAGCCAAGGGAAAAGGTGTCTCGACCCCCGAGATCCAA
AGAGTGAAGGAGTGTTACAACCTGACCTGGGAAGAGGCCCGACGGGCTCT
GCTCGTTAAGGCGGCCGTCGGACAACTCAGACGCAGGGGATGGGACGCCT
CGACAGCTTTAATGGAGCTGACGGCACGTATGGCACCGCTGCGGGTGTCA
TCGCCGCCACCGCCACCATTACCGGCGGTGTCAGCCCTGGGAGCACCGTC
GTTATTGTCGGTGCTTCCCTCCTCTTCGAGGAGCAAAGAAGGGAGGGAAG
GAGGGAAAGGCGAGGGTGGGGTGGAGGGCGAGAAGGGCGTTGCAGGCAAA
GAATCCATCATAACAGGCAGAAGTGCCATGACTCAAACTGAGGCAGCAGG
GCAAGAGGGCGCGGAGAAGGACCAGCAGCAACGGCAGCAGCAGCAGCAGT
CGCCTCAAAGCAGGCGTGGTGAAAGGCGAAAGCGGCTGTCGTCCTTCTCT
TGTTCCCCCGAGGAAAAAGACGGGAAAGTGGGAGCAATCAAGCATGAGAC
GAGCAGCAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTTATCTGGGCGTGG
CGCCCGAGAGGAAGAAAAAGAAGTCTGCGGCCCCTACCGCCGTGGGCAGG
GAGTCCGTGGCGGATGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGT
AAAGGAGGAGGAAGAGGGGAAGGAGAGGGAAGAAGTGAAAGAGGTAGCCG
CCGTAGCAGCAATCGGGAAAGGAAGGAAGGAGGGGCGGACGAAGAAAACT
GCTGCTGCAAGAGTATCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGCAGC
AGCAGAGGGACGTGGAGGGAGGAAGCGGGCTTGGGCTGCGGAGGGTATGG
AGGTGGGAGGTAGGGGTGGAGGAGGCGATGGCATGGGACAGGACGGAGAG
GTGGGGGCTGAGCAGGTGCTTGAGGGGGGGAGGGAGGGGAGGGTGACCGA
GAAAGGGAGGAAGCGCCAGACGAGAAGAAGTGCGGCTACTAGCACCAGCA
CGACTTCATCGACGACGATGACGACCATCACAAGCAGCAACAACACCAGC
AACAGTACCAGCAGCAGCAACAGCAGCTGCACCCGTGGGAAGCGAGGGCG
AGGAGGGGCGGCAGTCGAGAAGGAGGTGGGGGGGGAGGAAGGGGAGGGTG
GGATGGAGGAAAGTGGGAACAGGCCCTTACGGCGGACGGCACGGGGGCGG
AAGAAAGATATTGCAGGAGTATTGGAGGGATGA
back to top

Coding sequence (CDS) from alignment at chr3:213312..214844-

>NO03G00660.1 ID=NO03G00660.1|Name=NO03G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr3:213312..214844- (Nannochloropsis oceanica)
ATGGACGACAGCGTGGGTGGGGGAGGAAAGCAGGACACGCACGTGCCTTT
GGATTGGACCACGACCACGAGCAGCACTTCCTCTTTGTTTTCTACAGATG
CCGTGGCCCGCAGCCATACCCGCACCTTTCGCCAAGCCGTCCAAGCCGAG
ATGCACCGCTTGCAACACCAGGAAGGCCTCTCCCGTGCTGCCGCCGTCGA
GACCCTGCTAGCCCGCCTCACGTCCGCAACCAGCCCCCCTCCCTCCTCCT
CGTCCTTGTCCTCAGCCAAGGGAAAAGGTGTCTCGACCCCCGAGATCCAA
AGAGTGAAGGAGTGTTACAACCTGACCTGGGAAGAGGCCCGACGGGCTCT
GCTCGTTAAGGCGGCCGTCGGACAACTCAGACGCAGGGGATGGGACGCCT
CGACAGCTTTAATGGAGCTGACGGCACGTATGGCACCGCTGCGGGTGTCA
TCGCCGCCACCGCCACCATTACCGGCGGTGTCAGCCCTGGGAGCACCGTC
GTTATTGTCGGTGCTTCCCTCCTCTTCGAGGAGCAAAGAAGGGAGGGAAG
GAGGGAAAGGCGAGGGTGGGGTGGAGGGCGAGAAGGGCGTTGCAGGCAAA
GAATCCATCATAACAGGCAGAAGTGCCATGACTCAAACTGAGGCAGCAGG
GCAAGAGGGCGCGGAGAAGGACCAGCAGCAACGGCAGCAGCAGCAGCAGT
CGCCTCAAAGCAGGCGTGGTGAAAGGCGAAAGCGGCTGTCGTCCTTCTCT
TGTTCCCCCGAGGAAAAAGACGGGAAAGTGGGAGCAATCAAGCATGAGAC
GAGCAGCAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTTATCTGGGCGTGG
CGCCCGAGAGGAAGAAAAAGAAGTCTGCGGCCCCTACCGCCGTGGGCAGG
GAGTCCGTGGCGGATGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGT
AAAGGAGGAGGAAGAGGGGAAGGAGAGGGAAGAAGTGAAAGAGGTAGCCG
CCGTAGCAGCAATCGGGAAAGGAAGGAAGGAGGGGCGGACGAAGAAAACT
GCTGCTGCAAGAGTATCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGCAGC
AGCAGAGGGACGTGGAGGGAGGAAGCGGGCTTGGGCTGCGGAGGGTATGG
AGGTGGGAGGTAGGGGTGGAGGAGGCGATGGCATGGGACAGGACGGAGAG
GTGGGGGCTGAGCAGGTGCTTGAGGGGGGGAGGGAGGGGAGGGTGACCGA
GAAAGGGAGGAAGCGCCAGACGAGAAGAAGTGCGGCTACTAGCACCAGCA
CGACTTCATCGACGACGATGACGACCATCACAAGCAGCAACAACACCAGC
AACAGTACCAGCAGCAGCAACAGCAGCTGCACCCGTGGGAAGCGAGGGCG
AGGAGGGGCGGCAGTCGAGAAGGAGGTGGGGGGGGAGGAAGGGGAGGGTG
GGATGGAGGAAAGTGGGAACAGGCCCTTACGGCGGACGGCACGGGGGCGG
AAGAAAGATATTGCAGGAGTATTGGAGGGATGA
back to top
Synonyms
Publications