NO03G00490, NO03G00490 (gene) Nannochloropsis oceanica

Overview
NameNO03G00490
Unique NameNO03G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3525
Alignment locationchr3:151272..154796 +

Link to JBrowse

Properties
Property NameValue
DescriptionFungal specific transcription factor domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:151272..154796 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
[Close]
BLAST of NO03G00490 vs. NCBI_GenBank
Match: XP_005855282.1 (fungal specific transcription factor domain-containing protein [Nannochloropsis gaditana CCMP526] >EKU21083.1 fungal specific transcription factor domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.9 bits (276), Expect = 1.400e-20
Identity = 84/253 (33.20%), Postives = 109/253 (43.08%), Query Frame = 0 
Query:   28 MPTFKKEMVWRIAFRSGTRTPE---EG----RVVEAGHENEAQKTSKEGEKEEGKGPAMEGEV------STCEIRVLVKGAVAVGLTDQKLSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDPPSVKH-QLQHQXXXXXXXXXFIAAVGAEKRERPPNARKACCYCTLKKLACSGDLPCYLCSTRGIVCEYIERKRREQAHVPKVLKRAEPGAQP 267
            M T  KEMVW + +RS TR  E   EG    + V AG +++      + E EE +    +  V      STCE+R +V+G +A GLTD+ L S+                                                                  P  VK    +                   K  RP +AR+ACC+CT KKLACSG LPC+LC+TRGI CEY+ERKRR+Q HVPKV+KRA PG +P
Sbjct:    1 MSTEYKEMVWHLLYRS-TRADEKQQEGGSPRKDVSAGDDDKLDGNQMKTEFEEQENSKQDQNVGDAKQESTCEVRAVVRGPMASGLTDETLVSI------------------------------VINAVKSGRTTQVINLDDFPGDTTTLKADEDKNNAGPEPVKSTSTKGVPKKMAAPHSTYTNANPGKHHRPSSARRACCFCTAKKLACSGGLPCHLCATRGITCEYVERKRRQQPHVPKVIKRATPGEEP 222
The following BLAST results are available for this feature:
BLAST of NO03G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855282.11.400e-2033.20fungal specific transcription factor domain-contai... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005876NSK005876Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00490.1NO03G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00490.1NO03G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00490 ID=NO03G00490|Name=NO03G00490|organism=Nannochloropsis oceanica|type=gene|length=3525bp
CTCCGAGTTCTCTTTTTCAAGCTTAACGTTTCCACAGTGCCCGCGAGTGT
CTGTGTGTTACACACGCGAGAACCTTCCGTGTCAGAGTTTTGAATTCCCG
CTGTAAGGAATCACACTAGTTACCACCATAGCAGCCGCAGCTCACATTTG
TGTCGGGTTGGAGAATGCCCATGAACTCTCCGTTGTCCCGAGCAGGAAAT
ACATGTGGAAGCGAAGCCCGGAAACGGAGTTAGAGGGCGCCATAAAGGTG
TGTTATTGGTGCTTTGGGCGGGACTCTCACGCCCTCTCTCTCCCTGTACA
ATACAGAGAGACGTTTGAGCGTGCTATCTAGCTCTTTTTGTAGCAGGAGA
TCCACAGAACGCGCCTGACAACCCCCCCCCCCCCAAATACGTTGCCCGAC
CACTCTCGGATTTCCGGCAACCTGGACATGGAACGCCCAAGCAGCACCAT
CACCACGGGCAATGCCGCCACTCCTTCCTCGGACACGAGCCCTCCTGTAC
CTTCTGAGATGCCCACATTCAAGAAGGAGATGGTCTGGCGCATCGCTTTC
CGCTCGGGCACCCGCACACCTGAAGAAGGCCGGGTGGTAGAGGCAGGGCA
TGAAAACGAGGCCCAAAAGACGAGCAAGGAAGGCGAGAAGGAGGAGGGAA
AAGGCCCGGCCATGGAGGGAGAGGTATCCACTTGCGAGATCCGCGTGCTT
GTCAAGGGTGCGGTGGCCGTGGGTCTGACGGACCAGAAGTTATCCTCCCT
CGTCATCGAAGCTATCAAGAGCGGGCGTGCCACACAGGTTATGAACTTGT
ACGACGACGAGAGGAGCGACCAGGGCGAGGCCTACCAGGAGAAACCGGCG
GAAGGGGAAGAGGGAAAGGAGGGTGGGAGGGCGCTGAAAAAATCCCGGGC
GAATTCGGAAAGTGGCATGCAAGGGGGACAAGAGGTCTACAGGCGAGATC
CCCCGTCGGTGAAGCACCAGCTCCAGCACCAGCAACCGCAGCAGCATCAG
CAGCATTCTTTTATTGCCGCAGTGGGTGCAGAGAAGCGAGAGCGGCCGCC
GAATGCCCGCAAGGCCTGTTGCTACTGCACTCTTAAGAAGCTAGCTTGCA
GTGGGGATTTGCCATGgtacgtacgctcgtcggaggtgggcaacactgct
gtctacttatgtacatctctttcttctcctttttcacctccccttcgcca
tttagatgaaaaaacataagactggctcctgtaatcgattcacttacttt
cttctccctcctcttctctcttcaatacacgacacgaagcgtgacagaga
gatcctcacatcctcactcactccctccccccctctcttcccccctccct
ccctccctccctcccctcctcccagCTACCTGTGTTCCACGCGCGGCATA
GTCTGCGAGTACATCGAACGCAAGCGCCGGGAACAAGCCCACGTTCCCAA
GGTCCTCAAGCGCGCCGAGCCGGGAGCACAGCCGACCGCCAACTCCTCCA
CCTCTCTCTCCGACCCTCCCTTCAGTTCGACCTTACCTGGCTATCCTCCC
CCTCCTCGTCGCCGCCGGGGCCACGGCCATCACTCCAACGCCAAAAGTAA
CGCCAAGAGCAACATGAACAACAACAAGGGCAACAACGATAACAGCAACG
CCTCTCTCTCCCCGAACAAGCTGCAGCTCCAGCCTCAACTACAAATATCA
CCATGGATGCAGCAGCAGCAGCAGCAGCATATACCGATGGCTAACTGGCA
GCAGCAGTATCAGCAGCAGATCTTTGGTCAGCAGCAACTCCAGCAGCACC
TCCACCAGCACCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAG
TACTTATTGTCGATGCCCGACGCCGAACGGGCCTACTGGCTCCATGCGAA
TCCGAACATGTTCAAGGCCCTAAACGCTAACGCTATCGATGATGCCAGCC
CGGGCGCTGGTTCTAGTGGGAGCCAACCCTCCCTCCCTCCCAGGCCCCTT
CCGAACCCCAGCTACCCCCTTCCCCATGTCGGTGCTGGGAACTCCAATAC
TAGTGTTACCAATATGAACACCAACTGGGCTTCCCTTCCAGGAGTCCCCC
CTCACAGTTCGAACTCGTCCTTGTTTAATCCATGGGAAGCGGGAGTAGCA
GGAGCAGCAGGAGTAGGAGGTGTCAATCCTGGGGCGACGGCAGGGATTGG
AGGTCCCCGGGGGATGGTTGGCGGCGGTCTCGGCTTTCACTCCAACCTTA
TCGAAGGAGGCTCTGGTATGGTCAATCCTGTGAGCGTTTGGCAACACCAG
CAACAACACCAGCAGCAACACCAGCACCAGCATCAGCACCAACAGCACCA
GCAGCAACACCAGCAGCAGCAGATGGTACCGATGCCGCAGCAGCAACAAG
AGCAGCGGGGGGAGATGACTATGTCAGCGTCTCCGGTGGCGCCGACGGGA
CTCGGGGCATTGGCGGCTGTCTCAGCTGGGATGGAACGTAAAGGGGTTGG
AGGAGGAGCAGGTCTAGGAGCAGGAGCAGACGCTTGCGCAGCCGCTGCGG
CAGCAGATGAAGCACCAAGGACGGCTACGATATAGATATAGATTTGTAAA
GGTGCAGCAAGTAAAACTTGGAAAAAAAGAGAAGGGCGGTTGTAAGTAAG
AAAAATATGGGAGAGTCGATAAGACAACAGAATTTATGTGCCGTGTACAG
GGAGGGTGGCTACAGCTGAGTGCGGATCGATGTATGTCAAAAGTAAGCTA
AAAAAGCAAATATGAAGAGTGAATAGTATCTTGAGAAATAAGAAACATAA
GAGACAAGATAAGATTTAACCGCGAAGAAATCAATGCGTGTACAAAGAAT
ATGAGAGCACGATTTAATTGGGCAACCACATGGTCTGAGCCATTGCAAGG
GTCCTTGTACAGGATGGTGCTATTGCTCCGATGGATTATTCATGTGCAAG
CTTTGACTTTACCACACGCCTGTTGATCGGCAGAGGACATTCTTGCTGAT
GAACGCGCTCGCCTTTGTTATTTCTACACGTACACGACACACACAGACAC
CGCAAAGAGGCGGAAGCTTTTGAAGCATACTTGTATGATGACGATTTAAT
GATAGATAGCATATGCCAGCTCAAATCATGAAAGTTCCTGTGGTGAATGA
GGCAGCGGGAAGTAGTGCTGCGGCCACGGGCTGGCAGAAGCGACTTCCTG
TCCTATTTGCCTCGATGGTGGTGGCAGGGTTGATCGTGGTTCTCCGCGTT
CACCCTAACATGAAGCATGGTACAGTGTTGTTGCCAGGCACGGATTTGAC
GATCTTGGAGGAGTTATGTTTGAGGGAAATAGTCACAGTTAAGCAGAGAA
AAGGACGTGATGAAGGACAAGGTCATCGAGAAAGAGGAGGAAAGAGATCT
GAAATAATGGGTACTACGGTATGTTTTTCATCCCTTTGGAAGTAGATTTA
CAGTCAAATGAGGTATATGATCTCATTATTAAGAGGAATCAGGGAATAAG
AATGGGGGAGCCGGGAGAGCTGGGA
back to top

protein sequence of NO03G00490.1

>NO03G00490.1-protein ID=NO03G00490.1-protein|Name=NO03G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MERPSSTITTGNAATPSSDTSPPVPSEMPTFKKEMVWRIAFRSGTRTPEE
GRVVEAGHENEAQKTSKEGEKEEGKGPAMEGEVSTCEIRVLVKGAVAVGL
TDQKLSSLVIEAIKSGRATQVMNLYDDERSDQGEAYQEKPAEGEEGKEGG
RALKKSRANSESGMQGGQEVYRRDPPSVKHQLQHQQPQQHQQHSFIAAVG
AEKRERPPNARKACCYCTLKKLACSGDLPCYLCSTRGIVCEYIERKRREQ
AHVPKVLKRAEPGAQPTANSSTSLSDPPFSSTLPGYPPPPRRRRGHGHHS
NAKSNAKSNMNNNKGNNDNSNASLSPNKLQLQPQLQISPWMQQQQQQHIP
MANWQQQYQQQIFGQQQLQQHLHQHQHQQQQQQQQQQQYLLSMPDAERAY
WLHANPNMFKALNANAIDDASPGAGSSGSQPSLPPRPLPNPSYPLPHVGA
GNSNTSVTNMNTNWASLPGVPPHSSNSSLFNPWEAGVAGAAGVGGVNPGA
TAGIGGPRGMVGGGLGFHSNLIEGGSGMVNPVSVWQHQQQHQQQHQHQHQ
HQQHQQQHQQQQMVPMPQQQQEQRGEMTMSASPVAPTGLGALAAVSAGME
RKGVGGGAGLGAGADACAAAAAADEAPRTATI*
back to top
Synonyms
Publications