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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:151272..154796 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00490.1 vs.
Match: XP_005855282.1 (fungal specific transcription factor domain-containing protein [Nannochloropsis gaditana CCMP526]; EKU21083.1 fungal specific transcription factor domain-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 148.7 bits (374), Expect = 6.200e-32 Identity = 116/299 (38.80%), Postives = 151/299 (50.50%), Query Frame = 0
Query: 28 MPTFKKEMVWRIAFRSGTRTPE---EG----RVVEAGHENEAQKTSKEGEKEEGKGPAMEGEV------STCEIRVLVKGAVAVGLTDQKLSSLVIEAIKSGRATQVMNLYDDERSDQGEAYQEKPAEGEEGKEGGRALKKSRANSESGMQGGQEVYRRDPPSVKHQLQHQQPQQHQQHSFIAAVGAEKRERPPNARKACCYCTLKKLACSGDLPCYLCSTRGIVCEYIERKRREQAHVPKVLKRAEPGAQP-------TANSSTSLSDPPFSSTLPG--YPPPPRRRRGHGHHSNAKS 305
M T KEMVW + +RS TR E EG + V AG +++ + E EE + + V STCE+R +V+G +A GLTD+ L S+VI A+KSGR TQV+NL DD D LK + +G + + + P + HS K RP +AR+ACC+CT KKLACSG LPC+LC+TRGI CEY+ERKRR+Q HVPKV+KRA PG +P + S S P SS +P PPP + G G AKS
Sbjct: 1 MSTEYKEMVWHLLYRS-TRADEKQQEGGSPRKDVSAGDDDKLDGNQMKTEFEEQENSKQDQNVGDAKQESTCEVRAVVRGPMASGLTDETLVSIVINAVKSGRTTQVINL-DDFPGDT------------------TTLKADEDKNNAGPEPVKSTSTKGVPK----------KMAAPHSTYTNANPGKHHRPSSARRACCFCTAKKLACSGGLPCHLCATRGITCEYVERKRRQQPHVPKVIKRATPGEEPVTAAVFRSRPSDPSSLSPSDSSAIPAPRQSPPPSSQSG-GPRRGAKS 268
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00490.1 ID=NO03G00490.1|Name=NO03G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=3266bp CTCCGAGTTCTCTTTTTCAAGCTTAACGTTTCCACAGTGCCCGCGAGTGT CTGTGTGTTACACACGCGAGAACCTTCCGTGTCAGAGTTTTGAATTCCCG CTGTAAGGAATCACACTAGTTACCACCATAGCAGCCGCAGCTCACATTTG TGTCGGGTTGGAGAATGCCCATGAACTCTCCGTTGTCCCGAGCAGGAAAT ACATGTGGAAGCGAAGCCCGGAAACGGAGTTAGAGGGCGCCATAAAGGTG TGTTATTGGTGCTTTGGGCGGGACTCTCACGCCCTCTCTCTCCCTGTACA ATACAGAGAGACGTTTGAGCGTGCTATCTAGCTCTTTTTGTAGCAGGAGA TCCACAGAACGCGCCTGACAACCCCCCCCCCCCCAAATACGTTGCCCGAC CACTCTCGGATTTCCGGCAACCTGGACATGGAACGCCCAAGCAGCACCAT CACCACGGGCAATGCCGCCACTCCTTCCTCGGACACGAGCCCTCCTGTAC CTTCTGAGATGCCCACATTCAAGAAGGAGATGGTCTGGCGCATCGCTTTC CGCTCGGGCACCCGCACACCTGAAGAAGGCCGGGTGGTAGAGGCAGGGCA TGAAAACGAGGCCCAAAAGACGAGCAAGGAAGGCGAGAAGGAGGAGGGAA AAGGCCCGGCCATGGAGGGAGAGGTATCCACTTGCGAGATCCGCGTGCTT GTCAAGGGTGCGGTGGCCGTGGGTCTGACGGACCAGAAGTTATCCTCCCT CGTCATCGAAGCTATCAAGAGCGGGCGTGCCACACAGGTTATGAACTTGT ACGACGACGAGAGGAGCGACCAGGGCGAGGCCTACCAGGAGAAACCGGCG GAAGGGGAAGAGGGAAAGGAGGGTGGGAGGGCGCTGAAAAAATCCCGGGC GAATTCGGAAAGTGGCATGCAAGGGGGACAAGAGGTCTACAGGCGAGATC CCCCGTCGGTGAAGCACCAGCTCCAGCACCAGCAACCGCAGCAGCATCAG CAGCATTCTTTTATTGCCGCAGTGGGTGCAGAGAAGCGAGAGCGGCCGCC GAATGCCCGCAAGGCCTGTTGCTACTGCACTCTTAAGAAGCTAGCTTGCA GTGGGGATTTGCCATGCTACCTGTGTTCCACGCGCGGCATAGTCTGCGAG TACATCGAACGCAAGCGCCGGGAACAAGCCCACGTTCCCAAGGTCCTCAA GCGCGCCGAGCCGGGAGCACAGCCGACCGCCAACTCCTCCACCTCTCTCT CCGACCCTCCCTTCAGTTCGACCTTACCTGGCTATCCTCCCCCTCCTCGT CGCCGCCGGGGCCACGGCCATCACTCCAACGCCAAAAGTAACGCCAAGAG CAACATGAACAACAACAAGGGCAACAACGATAACAGCAACGCCTCTCTCT CCCCGAACAAGCTGCAGCTCCAGCCTCAACTACAAATATCACCATGGATG CAGCAGCAGCAGCAGCAGCATATACCGATGGCTAACTGGCAGCAGCAGTA TCAGCAGCAGATCTTTGGTCAGCAGCAACTCCAGCAGCACCTCCACCAGC ACCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGTACTTATTG TCGATGCCCGACGCCGAACGGGCCTACTGGCTCCATGCGAATCCGAACAT GTTCAAGGCCCTAAACGCTAACGCTATCGATGATGCCAGCCCGGGCGCTG GTTCTAGTGGGAGCCAACCCTCCCTCCCTCCCAGGCCCCTTCCGAACCCC AGCTACCCCCTTCCCCATGTCGGTGCTGGGAACTCCAATACTAGTGTTAC CAATATGAACACCAACTGGGCTTCCCTTCCAGGAGTCCCCCCTCACAGTT CGAACTCGTCCTTGTTTAATCCATGGGAAGCGGGAGTAGCAGGAGCAGCA GGAGTAGGAGGTGTCAATCCTGGGGCGACGGCAGGGATTGGAGGTCCCCG GGGGATGGTTGGCGGCGGTCTCGGCTTTCACTCCAACCTTATCGAAGGAG GCTCTGGTATGGTCAATCCTGTGAGCGTTTGGCAACACCAGCAACAACAC CAGCAGCAACACCAGCACCAGCATCAGCACCAACAGCACCAGCAGCAACA CCAGCAGCAGCAGATGGTACCGATGCCGCAGCAGCAACAAGAGCAGCGGG GGGAGATGACTATGTCAGCGTCTCCGGTGGCGCCGACGGGACTCGGGGCA TTGGCGGCTGTCTCAGCTGGGATGGAACGTAAAGGGGTTGGAGGAGGAGC AGGTCTAGGAGCAGGAGCAGACGCTTGCGCAGCCGCTGCGGCAGCAGATG AAGCACCAAGGACGGCTACGATATAGATATAGATTTGTAAAGGTGCAGCA AGTAAAACTTGGAAAAAAAGAGAAGGGCGGTTGTAAGTAAGAAAAATATG GGAGAGTCGATAAGACAACAGAATTTATGTGCCGTGTACAGGGAGGGTGG CTACAGCTGAGTGCGGATCGATGTATGTCAAAAGTAAGCTAAAAAAGCAA ATATGAAGAGTGAATAGTATCTTGAGAAATAAGAAACATAAGAGACAAGA TAAGATTTAACCGCGAAGAAATCAATGCGTGTACAAAGAATATGAGAGCA CGATTTAATTGGGCAACCACATGGTCTGAGCCATTGCAAGGGTCCTTGTA CAGGATGGTGCTATTGCTCCGATGGATTATTCATGTGCAAGCTTTGACTT TACCACACGCCTGTTGATCGGCAGAGGACATTCTTGCTGATGAACGCGCT CGCCTTTGTTATTTCTACACGTACACGACACACACAGACACCGCAAAGAG GCGGAAGCTTTTGAAGCATACTTGTATGATGACGATTTAATGATAGATAG CATATGCCAGCTCAAATCATGAAAGTTCCTGTGGTGAATGAGGCAGCGGG AAGTAGTGCTGCGGCCACGGGCTGGCAGAAGCGACTTCCTGTCCTATTTG CCTCGATGGTGGTGGCAGGGTTGATCGTGGTTCTCCGCGTTCACCCTAAC ATGAAGCATGGTACAGTGTTGTTGCCAGGCACGGATTTGACGATCTTGGA GGAGTTATGTTTGAGGGAAATAGTCACAGTTAAGCAGAGAAAAGGACGTG ATGAAGGACAAGGTCATCGAGAAAGAGGAGGAAAGAGATCTGAAATAATG GGTACTACGGTATGTTTTTCATCCCTTTGGAAGTAGATTTACAGTCAAAT GAGGTATATGATCTCATTATTAAGAGGAATCAGGGAATAAGAATGGGGGA GCCGGGAGAGCTGGGA back to topprotein sequence of NO03G00490.1 >NO03G00490.1-protein ID=NO03G00490.1-protein|Name=NO03G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp MERPSSTITTGNAATPSSDTSPPVPSEMPTFKKEMVWRIAFRSGTRTPEE GRVVEAGHENEAQKTSKEGEKEEGKGPAMEGEVSTCEIRVLVKGAVAVGL TDQKLSSLVIEAIKSGRATQVMNLYDDERSDQGEAYQEKPAEGEEGKEGG RALKKSRANSESGMQGGQEVYRRDPPSVKHQLQHQQPQQHQQHSFIAAVG AEKRERPPNARKACCYCTLKKLACSGDLPCYLCSTRGIVCEYIERKRREQ AHVPKVLKRAEPGAQPTANSSTSLSDPPFSSTLPGYPPPPRRRRGHGHHS NAKSNAKSNMNNNKGNNDNSNASLSPNKLQLQPQLQISPWMQQQQQQHIP MANWQQQYQQQIFGQQQLQQHLHQHQHQQQQQQQQQQQYLLSMPDAERAY WLHANPNMFKALNANAIDDASPGAGSSGSQPSLPPRPLPNPSYPLPHVGA GNSNTSVTNMNTNWASLPGVPPHSSNSSLFNPWEAGVAGAAGVGGVNPGA TAGIGGPRGMVGGGLGFHSNLIEGGSGMVNPVSVWQHQQQHQQQHQHQHQ HQQHQQQHQQQQMVPMPQQQQEQRGEMTMSASPVAPTGLGALAAVSAGME RKGVGGGAGLGAGADACAAAAAADEAPRTATI* back to topmRNA from alignment at chr3:151272..154796+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00490.1 ID=NO03G00490.1|Name=NO03G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=3525bp|location=Sequence derived from alignment at chr3:151272..154796+ (Nannochloropsis oceanica) CTCCGAGTTCTCTTTTTCAAGCTTAACGTTTCCACAGTGCCCGCGAGTGT
CTGTGTGTTACACACGCGAGAACCTTCCGTGTCAGAGTTTTGAATTCCCG
CTGTAAGGAATCACACTAGTTACCACCATAGCAGCCGCAGCTCACATTTG
TGTCGGGTTGGAGAATGCCCATGAACTCTCCGTTGTCCCGAGCAGGAAAT
ACATGTGGAAGCGAAGCCCGGAAACGGAGTTAGAGGGCGCCATAAAGGTG
TGTTATTGGTGCTTTGGGCGGGACTCTCACGCCCTCTCTCTCCCTGTACA
ATACAGAGAGACGTTTGAGCGTGCTATCTAGCTCTTTTTGTAGCAGGAGA
TCCACAGAACGCGCCTGACAACCCCCCCCCCCCCAAATACGTTGCCCGAC
CACTCTCGGATTTCCGGCAACCTGGACATGGAACGCCCAAGCAGCACCAT
CACCACGGGCAATGCCGCCACTCCTTCCTCGGACACGAGCCCTCCTGTAC
CTTCTGAGATGCCCACATTCAAGAAGGAGATGGTCTGGCGCATCGCTTTC
CGCTCGGGCACCCGCACACCTGAAGAAGGCCGGGTGGTAGAGGCAGGGCA
TGAAAACGAGGCCCAAAAGACGAGCAAGGAAGGCGAGAAGGAGGAGGGAA
AAGGCCCGGCCATGGAGGGAGAGGTATCCACTTGCGAGATCCGCGTGCTT
GTCAAGGGTGCGGTGGCCGTGGGTCTGACGGACCAGAAGTTATCCTCCCT
CGTCATCGAAGCTATCAAGAGCGGGCGTGCCACACAGGTTATGAACTTGT
ACGACGACGAGAGGAGCGACCAGGGCGAGGCCTACCAGGAGAAACCGGCG
GAAGGGGAAGAGGGAAAGGAGGGTGGGAGGGCGCTGAAAAAATCCCGGGC
GAATTCGGAAAGTGGCATGCAAGGGGGACAAGAGGTCTACAGGCGAGATC
CCCCGTCGGTGAAGCACCAGCTCCAGCACCAGCAACCGCAGCAGCATCAG
CAGCATTCTTTTATTGCCGCAGTGGGTGCAGAGAAGCGAGAGCGGCCGCC
GAATGCCCGCAAGGCCTGTTGCTACTGCACTCTTAAGAAGCTAGCTTGCA
GTGGGGATTTGCCATGGTACGTACGCTCGTCGGAGGTGGGCAACACTGCT
GTCTACTTATGTACATCTCTTTCTTCTCCTTTTTCACCTCCCCTTCGCCA
TTTAGATGAAAAAACATAAGACTGGCTCCTGTAATCGATTCACTTACTTT
CTTCTCCCTCCTCTTCTCTCTTCAATACACGACACGAAGCGTGACAGAGA
GATCCTCACATCCTCACTCACTCCCTCCCCCCCTCTCTTCCCCCCTCCCT
CCCTCCCTCCCTCCCCTCCTCCCAGCTACCTGTGTTCCACGCGCGGCATA
GTCTGCGAGTACATCGAACGCAAGCGCCGGGAACAAGCCCACGTTCCCAA
GGTCCTCAAGCGCGCCGAGCCGGGAGCACAGCCGACCGCCAACTCCTCCA
CCTCTCTCTCCGACCCTCCCTTCAGTTCGACCTTACCTGGCTATCCTCCC
CCTCCTCGTCGCCGCCGGGGCCACGGCCATCACTCCAACGCCAAAAGTAA
CGCCAAGAGCAACATGAACAACAACAAGGGCAACAACGATAACAGCAACG
CCTCTCTCTCCCCGAACAAGCTGCAGCTCCAGCCTCAACTACAAATATCA
CCATGGATGCAGCAGCAGCAGCAGCAGCATATACCGATGGCTAACTGGCA
GCAGCAGTATCAGCAGCAGATCTTTGGTCAGCAGCAACTCCAGCAGCACC
TCCACCAGCACCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAG
TACTTATTGTCGATGCCCGACGCCGAACGGGCCTACTGGCTCCATGCGAA
TCCGAACATGTTCAAGGCCCTAAACGCTAACGCTATCGATGATGCCAGCC
CGGGCGCTGGTTCTAGTGGGAGCCAACCCTCCCTCCCTCCCAGGCCCCTT
CCGAACCCCAGCTACCCCCTTCCCCATGTCGGTGCTGGGAACTCCAATAC
TAGTGTTACCAATATGAACACCAACTGGGCTTCCCTTCCAGGAGTCCCCC
CTCACAGTTCGAACTCGTCCTTGTTTAATCCATGGGAAGCGGGAGTAGCA
GGAGCAGCAGGAGTAGGAGGTGTCAATCCTGGGGCGACGGCAGGGATTGG
AGGTCCCCGGGGGATGGTTGGCGGCGGTCTCGGCTTTCACTCCAACCTTA
TCGAAGGAGGCTCTGGTATGGTCAATCCTGTGAGCGTTTGGCAACACCAG
CAACAACACCAGCAGCAACACCAGCACCAGCATCAGCACCAACAGCACCA
GCAGCAACACCAGCAGCAGCAGATGGTACCGATGCCGCAGCAGCAACAAG
AGCAGCGGGGGGAGATGACTATGTCAGCGTCTCCGGTGGCGCCGACGGGA
CTCGGGGCATTGGCGGCTGTCTCAGCTGGGATGGAACGTAAAGGGGTTGG
AGGAGGAGCAGGTCTAGGAGCAGGAGCAGACGCTTGCGCAGCCGCTGCGG
CAGCAGATGAAGCACCAAGGACGGCTACGATATAGATATAGATTTGTAAA
GGTGCAGCAAGTAAAACTTGGAAAAAAAGAGAAGGGCGGTTGTAAGTAAG
AAAAATATGGGAGAGTCGATAAGACAACAGAATTTATGTGCCGTGTACAG
GGAGGGTGGCTACAGCTGAGTGCGGATCGATGTATGTCAAAAGTAAGCTA
AAAAAGCAAATATGAAGAGTGAATAGTATCTTGAGAAATAAGAAACATAA
GAGACAAGATAAGATTTAACCGCGAAGAAATCAATGCGTGTACAAAGAAT
ATGAGAGCACGATTTAATTGGGCAACCACATGGTCTGAGCCATTGCAAGG
GTCCTTGTACAGGATGGTGCTATTGCTCCGATGGATTATTCATGTGCAAG
CTTTGACTTTACCACACGCCTGTTGATCGGCAGAGGACATTCTTGCTGAT
GAACGCGCTCGCCTTTGTTATTTCTACACGTACACGACACACACAGACAC
CGCAAAGAGGCGGAAGCTTTTGAAGCATACTTGTATGATGACGATTTAAT
GATAGATAGCATATGCCAGCTCAAATCATGAAAGTTCCTGTGGTGAATGA
GGCAGCGGGAAGTAGTGCTGCGGCCACGGGCTGGCAGAAGCGACTTCCTG
TCCTATTTGCCTCGATGGTGGTGGCAGGGTTGATCGTGGTTCTCCGCGTT
CACCCTAACATGAAGCATGGTACAGTGTTGTTGCCAGGCACGGATTTGAC
GATCTTGGAGGAGTTATGTTTGAGGGAAATAGTCACAGTTAAGCAGAGAA
AAGGACGTGATGAAGGACAAGGTCATCGAGAAAGAGGAGGAAAGAGATCT
GAAATAATGGGTACTACGGTATGTTTTTCATCCCTTTGGAAGTAGATTTA
CAGTCAAATGAGGTATATGATCTCATTATTAAGAGGAATCAGGGAATAAG
AATGGGGGAGCCGGGAGAGCTGGGA back to topCoding sequence (CDS) from alignment at chr3:151272..154796+ >NO03G00490.1 ID=NO03G00490.1|Name=NO03G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at chr3:151272..154796+ (Nannochloropsis oceanica) ATGGAACGCCCAAGCAGCACCATCACCACGGGCAATGCCGCCACTCCTTC CTCGGACACGAGCCCTCCTGTACCTTCTGAGATGCCCACATTCAAGAAGG AGATGGTCTGGCGCATCGCTTTCCGCTCGGGCACCCGCACACCTGAAGAA GGCCGGGTGGTAGAGGCAGGGCATGAAAACGAGGCCCAAAAGACGAGCAA GGAAGGCGAGAAGGAGGAGGGAAAAGGCCCGGCCATGGAGGGAGAGGTAT CCACTTGCGAGATCCGCGTGCTTGTCAAGGGTGCGGTGGCCGTGGGTCTG ACGGACCAGAAGTTATCCTCCCTCGTCATCGAAGCTATCAAGAGCGGGCG TGCCACACAGGTTATGAACTTGTACGACGACGAGAGGAGCGACCAGGGCG AGGCCTACCAGGAGAAACCGGCGGAAGGGGAAGAGGGAAAGGAGGGTGGG AGGGCGCTGAAAAAATCCCGGGCGAATTCGGAAAGTGGCATGCAAGGGGG ACAAGAGGTCTACAGGCGAGATCCCCCGTCGGTGAAGCACCAGCTCCAGC ACCAGCAACCGCAGCAGCATCAGCAGCATTCTTTTATTGCCGCAGTGGGT GCAGAGAAGCGAGAGCGGCCGCCGAATGCCCGCAAGGCCTGTTGCTACTG CACTCTTAAGAAGCTAGCTTGCAGTGGGGATTTGCCATGCTACCTGTGTT CCACGCGCGGCATAGTCTGCGAGTACATCGAACGCAAGCGCCGGGAACAA GCCCACGTTCCCAAGGTCCTCAAGCGCGCCGAGCCGGGAGCACAGCCGAC CGCCAACTCCTCCACCTCTCTCTCCGACCCTCCCTTCAGTTCGACCTTAC CTGGCTATCCTCCCCCTCCTCGTCGCCGCCGGGGCCACGGCCATCACTCC AACGCCAAAAGTAACGCCAAGAGCAACATGAACAACAACAAGGGCAACAA CGATAACAGCAACGCCTCTCTCTCCCCGAACAAGCTGCAGCTCCAGCCTC AACTACAAATATCACCATGGATGCAGCAGCAGCAGCAGCAGCATATACCG ATGGCTAACTGGCAGCAGCAGTATCAGCAGCAGATCTTTGGTCAGCAGCA ACTCCAGCAGCACCTCCACCAGCACCAGCACCAGCAGCAGCAGCAGCAGC AGCAGCAACAGCAGTACTTATTGTCGATGCCCGACGCCGAACGGGCCTAC TGGCTCCATGCGAATCCGAACATGTTCAAGGCCCTAAACGCTAACGCTAT CGATGATGCCAGCCCGGGCGCTGGTTCTAGTGGGAGCCAACCCTCCCTCC CTCCCAGGCCCCTTCCGAACCCCAGCTACCCCCTTCCCCATGTCGGTGCT GGGAACTCCAATACTAGTGTTACCAATATGAACACCAACTGGGCTTCCCT TCCAGGAGTCCCCCCTCACAGTTCGAACTCGTCCTTGTTTAATCCATGGG AAGCGGGAGTAGCAGGAGCAGCAGGAGTAGGAGGTGTCAATCCTGGGGCG ACGGCAGGGATTGGAGGTCCCCGGGGGATGGTTGGCGGCGGTCTCGGCTT TCACTCCAACCTTATCGAAGGAGGCTCTGGTATGGTCAATCCTGTGAGCG TTTGGCAACACCAGCAACAACACCAGCAGCAACACCAGCACCAGCATCAG CACCAACAGCACCAGCAGCAACACCAGCAGCAGCAGATGGTACCGATGCC GCAGCAGCAACAAGAGCAGCGGGGGGAGATGACTATGTCAGCGTCTCCGG TGGCGCCGACGGGACTCGGGGCATTGGCGGCTGTCTCAGCTGGGATGGAA CGTAAAGGGGTTGGAGGAGGAGCAGGTCTAGGAGCAGGAGCAGACGCTTG CGCAGCCGCTGCGGCAGCAGATGAAGCACCAAGGACGGCTACGATATAG back to top
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