NO03G00370, NO03G00370 (gene) Nannochloropsis oceanica

Overview
NameNO03G00370
Unique NameNO03G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2256
Alignment locationchr3:118913..121168 +

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Properties
Property NameValue
DescriptionWos2 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:118913..121168 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
Homology
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: EWM29507.1 (wos2 protein [Nannochloropsis gaditana])

HSP 1 Score: 250.0 bits (637), Expect = 7.400e-63
Identity = 120/133 (90.23%), Postives = 127/133 (95.49%), Query Frame = 0 
Query:    1 MTNIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNP-LDMSNLEGGMDFSQL 133
            MTN+APVKWAQRSDSIYVTICLPDVTDEKI+LG NS+DFKGKSNGKDYECHLEFLR+VKK+GSVWKVLPRSIQILLKKEE DTGFWERLLKDK+LEKTNVK+DWDRYVDEDEE  NP  DMSNLEGGMDFSQL
Sbjct:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQL 133
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: XP_005855276.1 (wos2 protein, partial [Nannochloropsis gaditana CCMP526] >EKU21077.1 wos2 protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 240.4 bits (612), Expect = 5.900e-60
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = 0 
Query:    1 MTNIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNP-LDMSNLEGGM 128
            MTN+APVKWAQRSDSIYVTICLPDVTDEKI+LG NS+DFKGKSNGKDYECHLEFLR+VKK+GSVWKVLPRSIQILLKKEE DTGFWERLLKDK+LEKTNVK+DWDRYVDEDEE  NP  DMSNLEGGM
Sbjct:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGM 128
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: CBN79635.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 158.3 bits (399), Expect = 2.900e-35
Identity = 79/128 (61.72%), Postives = 93/128 (72.66%), Query Frame = 0 
Query:    3 NIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDE-EGDNPLDMSNLEGGMDF 130
            N APVKWAQR+DSIY+T+ LPDV DE++ L ++ + F G SN K Y   LEFL  V  E S WKVLPRSIQ+ + KE  D  FWERLLKDK LEKTNVKIDW+++VDEDE EG    DMS L+GG  F
Sbjct:    4 NTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFSGTSNDKKYALDLEFLHDVNSEKSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQF 131
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: XP_002176705.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51168.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 150.6 bits (379), Expect = 6.100e-33
Identity = 77/128 (60.16%), Postives = 94/128 (73.44%), Query Frame = 0 
Query:    1 MTNIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQI-LLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNPLDMSNLEGGM 128
            + N AP+KWAQRSDS+Y+TI LPDV DE I+L + ++ FKG S  K YE ++EF + V  + S +KVLPRSIQ+ ++K EE+   FW RLLKDK LEK  VKIDWDRYVDEDEE D   D S LEGGM
Sbjct:    6 INNTAPIKWAQRSDSLYLTIALPDVKDETINLEDQTLKFKGTSGDKSYEVNIEFFKKVDAKDSTYKVLPRSIQMHVMKHEEDREEFWPRLLKDKALEKNQVKIDWDRYVDEDEE-DEGFDTSALEGGM 132
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: GAX09981.1 (hypothetical protein FisN_11Lh028 [Fistulifera solaris])

HSP 1 Score: 149.8 bits (377), Expect = 1.000e-32
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0 
Query:    3 NIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNPLDMSNLEGG 127
            N AP+KWAQRSDSIY+TI L DV DE I+L + ++ FKG S GK+Y   +EF + V  EGS +K LPRS+Q+ + K+E+D  FW RLLKDK  EK  VKIDWDRYVDED+E D   D S L+GG
Sbjct:    4 NTAPIKWAQRSDSIYLTIALSDVKDESINLKDATLTFKGTSEGKEYAIDIEFFKDVNAEGSTYKTLPRSVQMHIMKKESDEEFWPRLLKDKNKEKNQVKIDWDRYVDEDDEADG-FDTSALDGG 126
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: GAX14509.1 (hypothetical protein FisN_11Hh028 [Fistulifera solaris])

HSP 1 Score: 149.4 bits (376), Expect = 1.400e-32
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0 
Query:    3 NIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNPLDMSNLEGG 127
            N AP+KWAQRSDSIY+TI L DV DE I+L + ++ FKG S GK+Y   +EF + V  EGS +K LPRS+Q+ + K+E+D  FW RLLKDK  EK  VKIDWDRYVDED+E D   D S L+GG
Sbjct:    4 NTAPIKWAQRSDSIYLTIALSDVKDESINLKDATLTFKGTSEGKEYAIDIEFFKDVNAEGSTYKTLPRSVQMHIMKKESDEEFWPRLLKDKTKEKNQVKIDWDRYVDEDDEADG-FDTSALDGG 126
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: XP_002287664.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95107.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 148.7 bits (374), Expect = 2.300e-32
Identity = 76/132 (57.58%), Postives = 91/132 (68.94%), Query Frame = 0 
Query:    3 NIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQILLKKEEN-------DTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNPLDMSNLEGGM 128
            N AP+KWAQRSDS+Y+TI LPDV +E I+L   ++ FKGKS GKDYE  + F +SV  EGS +KVLPRS+Q+ + K             FW RLLKDK LEK  VK+DWDRYVDEDEE +   D S LEGGM
Sbjct:    5 NTAPIKWAQRSDSLYITIALPDVKEESINLENQTLKFKGKSEGKDYEVDIVFFKSVDAEGSTYKVLPRSVQMHVMKASKKXXXXXXXXXFWPRLLKDKALEKNQVKVDWDRYVDEDEE-EEGFDTSALEGGM 135
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: OEU21306.1 (HSP20-like chaperone [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 138.3 bits (347), Expect = 3.100e-29
Identity = 70/121 (57.85%), Postives = 87/121 (71.90%), Query Frame = 0 
Query:    2 TNIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQI-LLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNPLDMS 122
            TN AP+K+AQR DSIY+TI L DV DE I L +  + F+G S GK YE ++EF + V  EGS + VLPRS+Q+ +LK E+ +  FW RLLKDK LEK  +KIDWDRYVDEDEE +   DMS
Sbjct:    3 TNAAPIKYAQRKDSIYLTIALADVKDETIVLTDTELKFEGTSGGKKYEVNIEFFKKVDSEGSTYNVLPRSVQMHILKDEKEEEEFWTRLLKDKALEKNQIKIDWDRYVDEDEE-EEGFDMS 122
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: XP_008862228.1 (hypothetical protein H310_01006 [Aphanomyces invadans] >ETW08423.1 hypothetical protein H310_01006 [Aphanomyces invadans])

HSP 1 Score: 137.5 bits (345), Expect = 5.400e-29
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 0 
Query:    4 IAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEG--SVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEG-DNPLDMSNLEGGMDF 130
            +APVKWAQR DS+Y+T+ LPDV DEK+ L   S+ F G SN   YE +LEFL  V  +   S W    R+I   + K++ D  FW  LLKDK LEKTNVK+DW++YVDED+EG DN  DMS L GG  F
Sbjct:    7 VAPVKWAQRKDSLYLTVDLPDVKDEKVVLTNTSLKFSGTSNQTKYEVNLEFLHEVDTDAPESKWAKADRNIHFFILKKDKDADFWPHLLKDKHLEKTNVKVDWNKYVDEDDEGDDNGFDMSALSGGGGF 135
[Close]
BLAST of NO03G00370 vs. NCBI_GenBank
Match: XP_009822022.1 (hypothetical protein H257_00830 [Aphanomyces astaci] >ETV89622.1 hypothetical protein H257_00830 [Aphanomyces astaci])

HSP 1 Score: 135.2 bits (339), Expect = 2.700e-28
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 0 
Query:    4 IAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEG--SVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEG-DNPLDMSNLEGG 127
            +APVKWAQR DS+Y+T+ L DVTDEK++L   ++ F G SN   YE +LEFL  V  E   S W    R+I   + K++ D  FW  LLKDK LEKTNVK+DW++YVDEDEEG D+  DM+ L GG
Sbjct:   10 VAPVKWAQRKDSLYLTVDLADVTDEKVELTNTTLKFTGTSNQTKYEVNLEFLHEVDTEAAESKWAKADRNIHFYILKKDKDADFWPHLLKDKHLEKTNVKVDWNKYVDEDEEGEDSGFDMNALSGG 135
The following BLAST results are available for this feature:
BLAST of NO03G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29507.17.400e-6390.23wos2 protein [Nannochloropsis gaditana][more]
XP_005855276.15.900e-6089.84wos2 protein, partial [Nannochloropsis gaditana CC... [more]
CBN79635.12.900e-3561.72conserved unknown protein [Ectocarpus siliculosus][more]
XP_002176705.16.100e-3360.16predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX09981.11.000e-3258.87hypothetical protein FisN_11Lh028 [Fistulifera sol... [more]
GAX14509.11.400e-3258.87hypothetical protein FisN_11Hh028 [Fistulifera sol... [more]
XP_002287664.12.300e-3257.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU21306.13.100e-2957.85HSP20-like chaperone [Fragilariopsis cylindrus CCM... [more]
XP_008862228.15.400e-2954.26hypothetical protein H310_01006 [Aphanomyces invad... [more]
XP_009822022.12.700e-2853.97hypothetical protein H257_00830 [Aphanomyces astac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005865NSK005865Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00370.1NO03G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100744g1gene1125Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00370.1NO03G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00370 ID=NO03G00370|Name=NO03G00370|organism=Nannochloropsis oceanica|type=gene|length=2256bp
CTCGCCCACTCACACCGAGGAGCATGCTCTTCGAAAGTCTTTCCGTACTT
GGAGTGGCCTGTGTCCATTGGAAGAGGCTGACCAGTGTCCACACGTACAC
TTTATCTCGCTTCTTACACATCCATCGGTTCTATCACGTTCCAGTCCCGA
CCGCATATATTCAGAGGGACAAGGCCACGGCGCTGCGTAGTATTCCATAT
TGTTCTATTTCGATGACCCCCCGAGGCCTTTTCGCACTAGAAATACTGAG
GAATGAAAGCGCCAACAGCAGCAATAACACCATCACCACAACTATCATCA
CGCCACTCCAACGCTATGAGAGCGGGCGGCTCACCAAGCCATGGCTCGTC
TACCTTACGAAGAGAATCTCAACCTCCCCCCGTGAGAAAGCGTGACAAAA
AATGTATGCGCACAAGCACTCTGGGCCCACCTCTCCCTTTCCATCCAACA
CTAGTACAGGCAGGGCCAAACCCACACCTCTCTTCTCCACAGCGAAATCA
TGACGAACATCGCGCCTGTAAAGTGGGCACAGCGGTCAGACTCCATCTAC
GTCACCATTTGCCTGCCTGACGTGACGGACGAGAAGATTGACCTGGGCGA
GAACTCCATGGACTTTAAgtaagtgatcgaggcacgaagcgaaatagaga
aatcgggagggggagagagaggaagaggaaatggaggggagggtcaaaaa
aatatttgttctctcggtacggcgtgtttctgcgccggcatcgtgggctg
cgataccggccggccacggcgacgacgagtcttgatttacacggcttcca
tccaccctccttctcctgtctttagGGGCAAGAGCAACGGCAAAGACTAC
GAATGCCACCTGGAGTTCTTGCGCAGCGTCAAGAAAGAAGGCTCGGTCTG
GAAGGTTTTGCCCCGAAGCATTCAAATCCTACTGAAGAAGGAGGAGAACG
ACACCGGTTTTTGGGAGCGGCTGCTCAAGGACAAAAAGCTCGAGAAAACC
AACGTCAAGgtgctttgttgttagctgggcgctccctttttcccttcctc
ccttcctccctccttccacatagctttgaaagttttgtcttgtgggatac
ctctattccctcattctcctccctccctccctccctccttctttcttgtc
cttgataatgacccatcagatacatcaattactccgtttctttcctccct
ccctgcctccctgcctccctccctccctccccatcaacagATTGACTGGG
ACCGTTATGTGGACGAAGACGAGGAGGGAGATAACCCGCTCGACATGAGC
AACCTGGAAGGCGGCATGgtacgaaccctccctccttccctccctccttc
ctttcctccctccctttgtctccgtgcctccgtcttggcgatcctgcatg
cgaacttttgcccccctcacctcctcccttccctccttccctccttccct
ccttccctccttccctcctttcccctcacagGACTTCAGCCAGTTGGGAG
GCATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATG
GGCGACATGGCGGGGTTACAGCAGATGATGGGGGGAATGGGCGGAGGGTT
GGGAGGGGGGGAGGAGGGGGGGAGGAGGAGTATGGAGAGAAGGAGGATAG
CGATGATGATGgtgagtcatgaggggagttcagagggaggatagtgcgtt
agggaggaatggggagggatgagcgcaaaacgcactcgcacaagcacatt
aggacattgttattcagccgtattaacacgcatgtattaatatgaaaata
atcatattaacacacaatattacagAGCTGCCGGACTTGGAGAACGACGA
GGGGGAGGTGGAAGCAACGAACAAGGGAGGGAACGAGTAGGCGGAGGGTG
AGGAACAGCAGGAGGAGGAGTACGAGCCATCGGCTCTCACGCATGGCGAC
GGTTGTGCTTGACGTGGTAGAATAGGGTAAATGCAGCGGGAGGAGGAAGT
TAAATGCGAGGGAGGGTCGACGGACAGGCATTGAGGCCTTTCTTCACCTT
TCGTCTGCATAAGCATATGACTTAGCTTTTACGCTGAGGCAGGTAATAGG
GAAAAAGAAGAAGTGGGGGGAGTCTGGATTCTGGTGATCTTGAGTCTATT
TGCACTCTCTTGGAAGGACACCAAAAAAGCCTCCGTACCCTCTCATCATA
AAGTGGGCGGGAGAGAAGGGCGTTGACGTGAAAGAGAAGGAATCTTATGT
AACCGA
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protein sequence of NO03G00370.1

>NO03G00370.1-protein ID=NO03G00370.1-protein|Name=NO03G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MTNIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYEC
HLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNV
KIDWDRYVDEDEEGDNPLDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGM
GDMAGLQQMMGGMGGGLGGGEEGGRRSMERRRIAMMMSCRTWRTTRGRWK
QRTREGTSRRRVRNSRRRSTSHRLSRMATVVLDVVE*
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Synonyms
Publications