NO03G00370.1, NO03G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00370.1
Unique NameNO03G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1491
Alignment locationchr3:118913..121168 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:118913..121168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00370.1 vs.
Match: EWM29507.1 (wos2 protein [Nannochloropsis gaditana])

HSP 1 Score: 285.4 bits (729), Expect = 1.600e-73
Identity = 152/181 (83.98%), Postives = 160/181 (88.40%), Query Frame = 0 
Query:    1 MTNIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYECHLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNVKIDWDRYVDEDEEGDNP-LDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMGDMAG---LQQMMGGMGGGLGGGEEGGRRS 178
            MTN+APVKWAQRSDSIYVTICLPDVTDEKI+LG NS+DFKGKSNGKDYECHLEFLR+VKK+GSVWKVLPRSIQILLKKEE DTGFWERLLKDK+LEKTNVK+DWDRYVDEDEE  NP  DMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMG M G   LQ+MM GMG G  G   G   S
Sbjct:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMGGMGGMGNLQEMMAGMGKGDAGAYGGDEDS 181
The following BLAST results are available for this feature:
BLAST of NO03G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29507.11.600e-7383.98wos2 protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00370NO03G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00370.1NO03G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00370.1.cds1NO03G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00370.1.cds2NO03G00370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00370.1.cds3NO03G00370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00370.1.cds4NO03G00370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00370.1.cds5NO03G00370.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00370.1 ID=NO03G00370.1|Name=NO03G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
CTCGCCCACTCACACCGAGGAGCATGCTCTTCGAAAGTCTTTCCGTACTT
GGAGTGGCCTGTGTCCATTGGAAGAGGCTGACCAGTGTCCACACGTACAC
TTTATCTCGCTTCTTACACATCCATCGGTTCTATCACGTTCCAGTCCCGA
CCGCATATATTCAGAGGGACAAGGCCACGGCGCTGCGTAGTATTCCATAT
TGTTCTATTTCGATGACCCCCCGAGGCCTTTTCGCACTAGAAATACTGAG
GAATGAAAGCGCCAACAGCAGCAATAACACCATCACCACAACTATCATCA
CGCCACTCCAACGCTATGAGAGCGGGCGGCTCACCAAGCCATGGCTCGTC
TACCTTACGAAGAGAATCTCAACCTCCCCCCGTGAGAAAGCGTGACAAAA
AATGTATGCGCACAAGCACTCTGGGCCCACCTCTCCCTTTCCATCCAACA
CTAGTACAGGCAGGGCCAAACCCACACCTCTCTTCTCCACAGCGAAATCA
TGACGAACATCGCGCCTGTAAAGTGGGCACAGCGGTCAGACTCCATCTAC
GTCACCATTTGCCTGCCTGACGTGACGGACGAGAAGATTGACCTGGGCGA
GAACTCCATGGACTTTAAGGGCAAGAGCAACGGCAAAGACTACGAATGCC
ACCTGGAGTTCTTGCGCAGCGTCAAGAAAGAAGGCTCGGTCTGGAAGGTT
TTGCCCCGAAGCATTCAAATCCTACTGAAGAAGGAGGAGAACGACACCGG
TTTTTGGGAGCGGCTGCTCAAGGACAAAAAGCTCGAGAAAACCAACGTCA
AGATTGACTGGGACCGTTATGTGGACGAAGACGAGGAGGGAGATAACCCG
CTCGACATGAGCAACCTGGAAGGCGGCATGGACTTCAGCCAGTTGGGAGG
CATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATGG
GCGACATGGCGGGGTTACAGCAGATGATGGGGGGAATGGGCGGAGGGTTG
GGAGGGGGGGAGGAGGGGGGGAGGAGGAGTATGGAGAGAAGGAGGATAGC
GATGATGATGAGCTGCCGGACTTGGAGAACGACGAGGGGGAGGTGGAAGC
AACGAACAAGGGAGGGAACGAGTAGGCGGAGGGTGAGGAACAGCAGGAGG
AGGAGTACGAGCCATCGGCTCTCACGCATGGCGACGGTTGTGCTTGACGT
GGTAGAATAGGGTAAATGCAGCGGGAGGAGGAAGTTAAATGCGAGGGAGG
GTCGACGGACAGGCATTGAGGCCTTTCTTCACCTTTCGTCTGCATAAGCA
TATGACTTAGCTTTTACGCTGAGGCAGGTAATAGGGAAAAAGAAGAAGTG
GGGGGAGTCTGGATTCTGGTGATCTTGAGTCTATTTGCACTCTCTTGGAA
GGACACCAAAAAAGCCTCCGTACCCTCTCATCATAAAGTGGGCGGGAGAG
AAGGGCGTTGACGTGAAAGAGAAGGAATCTTATGTAACCGA
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protein sequence of NO03G00370.1

>NO03G00370.1-protein ID=NO03G00370.1-protein|Name=NO03G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MTNIAPVKWAQRSDSIYVTICLPDVTDEKIDLGENSMDFKGKSNGKDYEC
HLEFLRSVKKEGSVWKVLPRSIQILLKKEENDTGFWERLLKDKKLEKTNV
KIDWDRYVDEDEEGDNPLDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGM
GDMAGLQQMMGGMGGGLGGGEEGGRRSMERRRIAMMMSCRTWRTTRGRWK
QRTREGTSRRRVRNSRRRSTSHRLSRMATVVLDVVE*
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mRNA from alignment at chr3:118913..121168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00370.1 ID=NO03G00370.1|Name=NO03G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp|location=Sequence derived from alignment at chr3:118913..121168+ (Nannochloropsis oceanica)
CTCGCCCACTCACACCGAGGAGCATGCTCTTCGAAAGTCTTTCCGTACTT
GGAGTGGCCTGTGTCCATTGGAAGAGGCTGACCAGTGTCCACACGTACAC
TTTATCTCGCTTCTTACACATCCATCGGTTCTATCACGTTCCAGTCCCGA
CCGCATATATTCAGAGGGACAAGGCCACGGCGCTGCGTAGTATTCCATAT
TGTTCTATTTCGATGACCCCCCGAGGCCTTTTCGCACTAGAAATACTGAG
GAATGAAAGCGCCAACAGCAGCAATAACACCATCACCACAACTATCATCA
CGCCACTCCAACGCTATGAGAGCGGGCGGCTCACCAAGCCATGGCTCGTC
TACCTTACGAAGAGAATCTCAACCTCCCCCCGTGAGAAAGCGTGACAAAA
AATGTATGCGCACAAGCACTCTGGGCCCACCTCTCCCTTTCCATCCAACA
CTAGTACAGGCAGGGCCAAACCCACACCTCTCTTCTCCACAGCGAAATCA
TGACGAACATCGCGCCTGTAAAGTGGGCACAGCGGTCAGACTCCATCTAC
GTCACCATTTGCCTGCCTGACGTGACGGACGAGAAGATTGACCTGGGCGA
GAACTCCATGGACTTTAAGTAAGTGATCGAGGCACGAAGCGAAATAGAGA
AATCGGGAGGGGGAGAGAGAGGAAGAGGAAATGGAGGGGAGGGTCAAAAA
AATATTTGTTCTCTCGGTACGGCGTGTTTCTGCGCCGGCATCGTGGGCTG
CGATACCGGCCGGCCACGGCGACGACGAGTCTTGATTTACACGGCTTCCA
TCCACCCTCCTTCTCCTGTCTTTAGGGGCAAGAGCAACGGCAAAGACTAC
GAATGCCACCTGGAGTTCTTGCGCAGCGTCAAGAAAGAAGGCTCGGTCTG
GAAGGTTTTGCCCCGAAGCATTCAAATCCTACTGAAGAAGGAGGAGAACG
ACACCGGTTTTTGGGAGCGGCTGCTCAAGGACAAAAAGCTCGAGAAAACC
AACGTCAAGGTGCTTTGTTGTTAGCTGGGCGCTCCCTTTTTCCCTTCCTC
CCTTCCTCCCTCCTTCCACATAGCTTTGAAAGTTTTGTCTTGTGGGATAC
CTCTATTCCCTCATTCTCCTCCCTCCCTCCCTCCCTCCTTCTTTCTTGTC
CTTGATAATGACCCATCAGATACATCAATTACTCCGTTTCTTTCCTCCCT
CCCTGCCTCCCTGCCTCCCTCCCTCCCTCCCCATCAACAGATTGACTGGG
ACCGTTATGTGGACGAAGACGAGGAGGGAGATAACCCGCTCGACATGAGC
AACCTGGAAGGCGGCATGGTACGAACCCTCCCTCCTTCCCTCCCTCCTTC
CTTTCCTCCCTCCCTTTGTCTCCGTGCCTCCGTCTTGGCGATCCTGCATG
CGAACTTTTGCCCCCCTCACCTCCTCCCTTCCCTCCTTCCCTCCTTCCCT
CCTTCCCTCCTTCCCTCCTTTCCCCTCACAGGACTTCAGCCAGTTGGGAG
GCATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATG
GGCGACATGGCGGGGTTACAGCAGATGATGGGGGGAATGGGCGGAGGGTT
GGGAGGGGGGGAGGAGGGGGGGAGGAGGAGTATGGAGAGAAGGAGGATAG
CGATGATGATGGTGAGTCATGAGGGGAGTTCAGAGGGAGGATAGTGCGTT
AGGGAGGAATGGGGAGGGATGAGCGCAAAACGCACTCGCACAAGCACATT
AGGACATTGTTATTCAGCCGTATTAACACGCATGTATTAATATGAAAATA
ATCATATTAACACACAATATTACAGAGCTGCCGGACTTGGAGAACGACGA
GGGGGAGGTGGAAGCAACGAACAAGGGAGGGAACGAGTAGGCGGAGGGTG
AGGAACAGCAGGAGGAGGAGTACGAGCCATCGGCTCTCACGCATGGCGAC
GGTTGTGCTTGACGTGGTAGAATAGGGTAAATGCAGCGGGAGGAGGAAGT
TAAATGCGAGGGAGGGTCGACGGACAGGCATTGAGGCCTTTCTTCACCTT
TCGTCTGCATAAGCATATGACTTAGCTTTTACGCTGAGGCAGGTAATAGG
GAAAAAGAAGAAGTGGGGGGAGTCTGGATTCTGGTGATCTTGAGTCTATT
TGCACTCTCTTGGAAGGACACCAAAAAAGCCTCCGTACCCTCTCATCATA
AAGTGGGCGGGAGAGAAGGGCGTTGACGTGAAAGAGAAGGAATCTTATGT
AACCGA
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Coding sequence (CDS) from alignment at chr3:118913..121168+

>NO03G00370.1 ID=NO03G00370.1|Name=NO03G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr3:118913..121168+ (Nannochloropsis oceanica)
ATGACGAACATCGCGCCTGTAAAGTGGGCACAGCGGTCAGACTCCATCTA
CGTCACCATTTGCCTGCCTGACGTGACGGACGAGAAGATTGACCTGGGCG
AGAACTCCATGGACTTTAAGGGCAAGAGCAACGGCAAAGACTACGAATGC
CACCTGGAGTTCTTGCGCAGCGTCAAGAAAGAAGGCTCGGTCTGGAAGGT
TTTGCCCCGAAGCATTCAAATCCTACTGAAGAAGGAGGAGAACGACACCG
GTTTTTGGGAGCGGCTGCTCAAGGACAAAAAGCTCGAGAAAACCAACGTC
AAGATTGACTGGGACCGTTATGTGGACGAAGACGAGGAGGGAGATAACCC
GCTCGACATGAGCAACCTGGAAGGCGGCATGGACTTCAGCCAGTTGGGAG
GCATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATGGGAGGCATG
GGCGACATGGCGGGGTTACAGCAGATGATGGGGGGAATGGGCGGAGGGTT
GGGAGGGGGGGAGGAGGGGGGGAGGAGGAGTATGGAGAGAAGGAGGATAG
CGATGATGATGAGCTGCCGGACTTGGAGAACGACGAGGGGGAGGTGGAAG
CAACGAACAAGGGAGGGAACGAGTAGGCGGAGGGTGAGGAACAGCAGGAG
GAGGAGTACGAGCCATCGGCTCTCACGCATGGCGACGGTTGTGCTTGACG
TGGTAGAATAG
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Synonyms
Publications