NO03G00310, NO03G00310 (gene) Nannochloropsis oceanica

Overview
NameNO03G00310
Unique NameNO03G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1037
Alignment locationchr3:92329..93365 +

Link to JBrowse

Properties
Property NameValue
Description60s ribosomal protein l34
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:92329..93365 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008195Ribosomal_L34Ae
Homology
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: XP_005853417.1 (large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >XP_005854724.1 large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >EKU21637.1 large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >EKU22941.1 large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >EWM29610.1 60s ribosomal protein l34 [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 6.200e-55
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAKK 115
            MGKDTRVTYQRRHAYATRSN RVIVKTPGGRLTLHQIKKKTRGPHCGDCK++LPGIKHLKTKEYKN+HKRERTVSRAYGGSRC SCVRSRIVRAFLIEEQKIVKRVLNEKK+KK
Sbjct:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: XP_009038685.1 (hypothetical protein AURANDRAFT_29090 [Aureococcus anophagefferens] >EGB06501.1 hypothetical protein AURANDRAFT_29090 [Aureococcus anophagefferens])

HSP 1 Score: 162.5 bits (410), Expect = 7.600e-37
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 0 
Query:    3 KDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAK 114
            KDTRVT++RRHAY T+SN    VKTPGGRL  H   KK +GP CGDCK SLPGIKHL +  YKN HKRERTVSRAYGGSRC  CVR R+VRAFLIEEQKIVK+++ EK  K
Sbjct:    2 KDTRVTFKRRHAYNTKSNVLKAVKTPGGRLVGHYASKKRQGPKCGDCKCSLPGIKHLSSFSYKNTHKRERTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKQMMMEKSKK 112
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: XP_009842441.1 (hypothetical protein H257_15873 [Aphanomyces astaci] >ETV68142.1 hypothetical protein H257_15873 [Aphanomyces astaci])

HSP 1 Score: 161.0 bits (406), Expect = 2.200e-36
Identity = 78/114 (68.42%), Postives = 92/114 (80.70%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAKK 115
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L  H +KK + GP CGDCK +L GIKHL +K YKN+ K E+TVSRAYGGSRC  CVR RIVRAFLIEEQKIVK+VL EK +KK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVPVKTPGGKLVAHYVKKHSHGPKCGDCKQALKGIKHLASKAYKNIAKSEKTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: XP_008606511.1 (50S ribosomal protein L34e [Saprolegnia diclina VS20] >XP_012204073.1 50S ribosomal protein L34e [Saprolegnia parasitica CBS 223.65] >EQC40037.1 50S ribosomal protein L34e [Saprolegnia diclina VS20] >KDO25238.1 50S ribosomal protein L34e [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 159.8 bits (403), Expect = 4.900e-36
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAKK 115
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L  H  KK + GP CGDCK SL GIKHL +K YKNV K +RTVSRAYGGSRC  CVR RIVRAFLIEEQKIVK+VL EK +KK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVPVKTPGGKLIAHYRKKTSSGPKCGDCKQSLKGIKHLASKAYKNVSKSQRTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: XP_008873001.1 (hypothetical protein H310_08870 [Aphanomyces invadans] >ETV98126.1 hypothetical protein H310_08870 [Aphanomyces invadans])

HSP 1 Score: 159.5 bits (402), Expect = 6.400e-36
Identity = 77/114 (67.54%), Postives = 91/114 (79.82%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAKK 115
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L  H +KK + GP CGDCK +L GIKH  +K YKN+ K E+TVSRAYGGSRC  CVR RIVRAFLIEEQKIVK+VL EK +KK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVPVKTPGGKLVAHYVKKHSHGPKCGDCKQALKGIKHFASKAYKNIAKSEKTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: OQR87055.1 (ribosomal protein L34 [Achlya hypogyna])

HSP 1 Score: 159.1 bits (401), Expect = 8.400e-36
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAKK 115
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L  H  K  + GP CGDCK SL GIKHL +K YKNV K +RTVSRAYGGSRC  CVR RIVRAFLIEEQKIVK+VL EK +KK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVAVKTPGGKLVAHYRKNTSTGPKCGDCKQSLKGIKHLASKAYKNVSKSQRTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: AAY43421.1 (ribosomal protein L34 [Phytophthora infestans])

HSP 1 Score: 157.9 bits (398), Expect = 1.900e-35
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAK 114
            M K+ R+TY+RRH+YAT+SN    VKTPGG+L    IKK+  GP CGDCK +L GIKHL++KEYKNV K +RTVSRAYGGSRC  CVR RIVRAFLIEEQKIVK+VL EK  K
Sbjct:    1 MVKNVRITYRRRHSYATKSNAIKAVKTPGGKLVAQYIKKRAAGPKCGDCKQTLKGIKHLQSKEYKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLMEKLKK 113
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: GAX93477.1 (ribosomal protein L34 [Pythium insidiosum])

HSP 1 Score: 156.8 bits (395), Expect = 4.100e-35
Identity = 80/114 (70.18%), Postives = 88/114 (77.19%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAKK 115
            M K+ RVTY+RRH+YAT+SN   +VKTPGG+L     KK   GP CGDCK SL GIKHL  KEYKNV K  RTV+RAYGGSRC  CVRSRIVRAFLIEEQKIVK+VL EK  KK
Sbjct:    1 MVKNVRVTYRRRHSYATKSNGIRVVKTPGGKLVAQTRKKAAAGPKCGDCKQSLKGIKHLSPKEYKNVSKTHRTVARAYGGSRCAKCVRSRIVRAFLIEEQKIVKKVLLEKLKKK 114
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: XP_009518381.1 (hypothetical protein PHYSODRAFT_310652 [Phytophthora sojae] >EGZ23093.1 hypothetical protein PHYSODRAFT_310652 [Phytophthora sojae])

HSP 1 Score: 156.4 bits (394), Expect = 5.400e-35
Identity = 79/113 (69.91%), Postives = 88/113 (77.88%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAK 114
            M K+ R+TY+RRH+YATRSN    VKTPGG+L     KK+  GP CGDCK SL GIKHL++KEYKNV K  RTVSRAYGGSRC  CVR RIVRAFLIEEQKIVK+VL EK  K
Sbjct:    1 MVKNVRITYRRRHSYATRSNGIKAVKTPGGKLVAQYRKKRAAGPKCGDCKQSLKGIKHLQSKEYKNVSKTHRTVSRAYGGSRCAICVRQRIVRAFLIEEQKIVKKVLMEKLKK 113
[Close]
BLAST of NO03G00310 vs. NCBI_GenBank
Match: OWZ24784.1 (Ribosomal protein L34 [Phytophthora megakarya])

HSP 1 Score: 155.6 bits (392), Expect = 9.200e-35
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAK 114
            M K+ R+TY+RRH+YATRSN    VKTPGG+L     KK+  GP CGDCK +L GIKHL++KEYKNV K +RTVSRAYGGSRC  CVR RIVRAFLIEEQKIVK+VL EK  K
Sbjct:    1 MVKNVRITYRRRHSYATRSNGIKAVKTPGGKLVAQYRKKRAAGPKCGDCKQTLKGIKHLQSKEYKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLLEKLKK 113
The following BLAST results are available for this feature:
BLAST of NO03G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853417.16.200e-5594.74large subunit ribosomal protein L34e [Nannochlorop... [more]
XP_009038685.17.600e-3771.17hypothetical protein AURANDRAFT_29090 [Aureococcus... [more]
XP_009842441.12.200e-3668.42hypothetical protein H257_15873 [Aphanomyces astac... [more]
XP_008606511.14.900e-3670.1850S ribosomal protein L34e [Saprolegnia diclina VS... [more]
XP_008873001.16.400e-3667.54hypothetical protein H310_08870 [Aphanomyces invad... [more]
OQR87055.18.400e-3669.30ribosomal protein L34 [Achlya hypogyna][more]
AAY43421.11.900e-3569.03ribosomal protein L34 [Phytophthora infestans][more]
GAX93477.14.100e-3570.18ribosomal protein L34 [Pythium insidiosum][more]
XP_009518381.15.400e-3569.91hypothetical protein PHYSODRAFT_310652 [Phytophtho... [more]
OWZ24784.19.200e-3569.03Ribosomal protein L34 [Phytophthora megakarya][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005858NSK005858Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00310.1NO03G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611953gene_10321Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g3gene1119Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00310.1NO03G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00310 ID=NO03G00310|Name=NO03G00310|organism=Nannochloropsis oceanica|type=gene|length=1037bp
ATGGGCAAGGATACGCGAGTCACCTACCAACGGCGCCATGCCTATGCCAC
CCGGTCCAATGAGCGTGTCATCGTCAAGACCCCAGgtcagtcctcccctc
aaatgatcatgatgctgccctgtccttcccttcctcctccgcggccttac
acaatctctggatcacccctaaccccgtctattccatataccagGCGGCC
GTTTGACTCTCCATCAGATCAAGAAGAAGACCCGTGGCCCCCACTGCGGC
GACTGCAAGGTCAGCCTGCCCGGCATCAAGCACCTCAAGACCAAGgtaat
gaacgatatgtagtgttgttcgctggacgcagccccttttcgtccacctt
ctatgtgcctggatctatggaccctactgcagtgttgtccacctagtggc
ctccgatgttcccttaatccccctgccagcatcgactcttgatctcttct
caccttagcctgcttccctctctccctcccttccttccttcattttcccc
ttccaaacaccacaatagGAGTACAAGAACGTGCACAAGCGAGAGCGTAC
CGTGTCCCGTGCCTATGGCGGATCCCGATGCGGAAGCTGCGTCCGAAGCC
Ggtgggtgatgcgggagggagggagggagggagaggaggacggcacgttg
aagagacgcgacgagtagaatgatgaatgagaatcccttactctgctagc
gcgagacgcgaccctttcgggaaacggtgagcgaggcaaccataacaaat
catgaaattagtctttcgttctgacactcaagaagaagcgacgcgcagag
gatgaggagtaggaggatgagtaggaggatcagaagaagaagaagtagta
gtagaaggagaagagcgaatagtgagaggaatttgatgcgaatcaataca
ctcatcctctttccattatctctttttctccaaacgcacgacggaacttc
cccacacacagCATCGTCCGCGCCTTTCTAATCGAGGAGCAAAAGATCGT
TAAGCGCGTCTTGAACGAGAAGAAGGCCAAGAAGTAA
back to top

protein sequence of NO03G00310.1

>NO03G00310.1-protein ID=NO03G00310.1-protein|Name=NO03G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCK
VSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQ
KIVKRVLNEKKAKK*
back to top
Synonyms
Publications