NO03G00310.1, NO03G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00310.1
Unique NameNO03G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length345
Alignment locationchr3:92329..93365 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:92329..93365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00310.1 vs.
Match: XP_005853417.1 (large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526]; XP_005854724.1 large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526]; EKU21637.1 large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526]; EKU22941.1 large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526]; EWM29610.1 60s ribosomal protein l34 [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 6.200e-55
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0 
Query:    1 MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCKVSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQKIVKRVLNEKKAKK 115
            MGKDTRVTYQRRHAYATRSN RVIVKTPGGRLTLHQIKKKTRGPHCGDCK++LPGIKHLKTKEYKN+HKRERTVSRAYGGSRC SCVRSRIVRAFLIEEQKIVKRVLNEKK+KK
Sbjct:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
The following BLAST results are available for this feature:
BLAST of NO03G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853417.16.200e-5594.74large subunit ribosomal protein L34e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00310NO03G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00310.1NO03G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00310.1.cds1NO03G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00310.1.cds2NO03G00310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00310.1.cds3NO03G00310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00310.1.cds4NO03G00310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00310.1 ID=NO03G00310.1|Name=NO03G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=345bp
ATGGGCAAGGATACGCGAGTCACCTACCAACGGCGCCATGCCTATGCCAC
CCGGTCCAATGAGCGTGTCATCGTCAAGACCCCAGGCGGCCGTTTGACTC
TCCATCAGATCAAGAAGAAGACCCGTGGCCCCCACTGCGGCGACTGCAAG
GTCAGCCTGCCCGGCATCAAGCACCTCAAGACCAAGGAGTACAAGAACGT
GCACAAGCGAGAGCGTACCGTGTCCCGTGCCTATGGCGGATCCCGATGCG
GAAGCTGCGTCCGAAGCCGCATCGTCCGCGCCTTTCTAATCGAGGAGCAA
AAGATCGTTAAGCGCGTCTTGAACGAGAAGAAGGCCAAGAAGTAA
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protein sequence of NO03G00310.1

>NO03G00310.1-protein ID=NO03G00310.1-protein|Name=NO03G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCK
VSLPGIKHLKTKEYKNVHKRERTVSRAYGGSRCGSCVRSRIVRAFLIEEQ
KIVKRVLNEKKAKK*
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mRNA from alignment at chr3:92329..93365+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00310.1 ID=NO03G00310.1|Name=NO03G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp|location=Sequence derived from alignment at chr3:92329..93365+ (Nannochloropsis oceanica)
ATGGGCAAGGATACGCGAGTCACCTACCAACGGCGCCATGCCTATGCCAC
CCGGTCCAATGAGCGTGTCATCGTCAAGACCCCAGGTCAGTCCTCCCCTC
AAATGATCATGATGCTGCCCTGTCCTTCCCTTCCTCCTCCGCGGCCTTAC
ACAATCTCTGGATCACCCCTAACCCCGTCTATTCCATATACCAGGCGGCC
GTTTGACTCTCCATCAGATCAAGAAGAAGACCCGTGGCCCCCACTGCGGC
GACTGCAAGGTCAGCCTGCCCGGCATCAAGCACCTCAAGACCAAGGTAAT
GAACGATATGTAGTGTTGTTCGCTGGACGCAGCCCCTTTTCGTCCACCTT
CTATGTGCCTGGATCTATGGACCCTACTGCAGTGTTGTCCACCTAGTGGC
CTCCGATGTTCCCTTAATCCCCCTGCCAGCATCGACTCTTGATCTCTTCT
CACCTTAGCCTGCTTCCCTCTCTCCCTCCCTTCCTTCCTTCATTTTCCCC
TTCCAAACACCACAATAGGAGTACAAGAACGTGCACAAGCGAGAGCGTAC
CGTGTCCCGTGCCTATGGCGGATCCCGATGCGGAAGCTGCGTCCGAAGCC
GGTGGGTGATGCGGGAGGGAGGGAGGGAGGGAGAGGAGGACGGCACGTTG
AAGAGACGCGACGAGTAGAATGATGAATGAGAATCCCTTACTCTGCTAGC
GCGAGACGCGACCCTTTCGGGAAACGGTGAGCGAGGCAACCATAACAAAT
CATGAAATTAGTCTTTCGTTCTGACACTCAAGAAGAAGCGACGCGCAGAG
GATGAGGAGTAGGAGGATGAGTAGGAGGATCAGAAGAAGAAGAAGTAGTA
GTAGAAGGAGAAGAGCGAATAGTGAGAGGAATTTGATGCGAATCAATACA
CTCATCCTCTTTCCATTATCTCTTTTTCTCCAAACGCACGACGGAACTTC
CCCACACACAGCATCGTCCGCGCCTTTCTAATCGAGGAGCAAAAGATCGT
TAAGCGCGTCTTGAACGAGAAGAAGGCCAAGAAGTAA
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Coding sequence (CDS) from alignment at chr3:92329..93365+

>NO03G00310.1 ID=NO03G00310.1|Name=NO03G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at chr3:92329..93365+ (Nannochloropsis oceanica)
ATGGGCAAGGATACGCGAGTCACCTACCAACGGCGCCATGCCTATGCCAC
CCGGTCCAATGAGCGTGTCATCGTCAAGACCCCAGGCGGCCGTTTGACTC
TCCATCAGATCAAGAAGAAGACCCGTGGCCCCCACTGCGGCGACTGCAAG
GTCAGCCTGCCCGGCATCAAGCACCTCAAGACCAAGGAGTACAAGAACGT
GCACAAGCGAGAGCGTACCGTGTCCCGTGCCTATGGCGGATCCCGATGCG
GAAGCTGCGTCCGAAGCCGCATCGTCCGCGCCTTTCTAATCGAGGAGCAA
AAGATCGTTAAGCGCGTCTTGAACGAGAAGAAGGCCAAGAAGTAA
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Synonyms
Publications