NO03G00130, NO03G00130 (gene) Nannochloropsis oceanica

Overview
NameNO03G00130
Unique NameNO03G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2664
Alignment locationchr3:35098..37761 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:35098..37761 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G00130 vs. NCBI_GenBank
Match: EWM29985.1 (hypothetical protein Naga_100276g8 [Nannochloropsis gaditana])

HSP 1 Score: 101.3 bits (251), Expect = 2.800e-18
Identity = 75/160 (46.88%), Postives = 91/160 (56.88%), Query Frame = 0 
Query:    1 MRGALLSTAVVALSLGLVRGGASGDASGNIPARLRATGHAEDNHELRKLHDELVKE----------QHQHEAKFERRVSVEEIKALVAHQREAHPAHQTAKENFQRMKLQRKARFDSMLREGEKAAIASGHLLQGFIYGKEAVQEHEIRMEQANRILLQQ 151
            MR  L ST +VA  L LVRGG + D +GN  ++LRA          +K  D  + E                    + S EEIKAL++H++ A PA+QTAKE F R+ L RKARFD ML EGEKAA ASG    GFIYGK AV + E R EQANR LL +
Sbjct:    1 MRKLLFSTTIVAFVLILVRGGNAADLTGN-SSKLRAGKSTAGAVSTQKHVDYKLSEXXXXXXXXXXXXXXXXXXXXKPSEEEIKALMSHRQAALPAYQTAKEQFDRVTLHRKARFDRMLEEGEKAAFASGDQSHGFIYGKMAVLKEETRREQANRRLLHR 159
The following BLAST results are available for this feature:
BLAST of NO03G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29985.12.800e-1846.88hypothetical protein Naga_100276g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL071nonsL071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR055ngnoR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005902NSK005902Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00130.1NO03G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611886gene_10297Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100276g8gene655Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00130.1NO03G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00130 ID=NO03G00130|Name=NO03G00130|organism=Nannochloropsis oceanica|type=gene|length=2664bp
AACAGGCAGTCAAATTGTAGGCCTAGCCACCGAGCCTCGTGTTAATCATG
CGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTTGTCCCTGGGCTTGGT
GCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATATCCCGGCCCGGCTTC
GAGCCACCGGCCATGCTGAGGATAACCACGAACTGCGAAAGCTTCATGAT
GAACTTGTCAAGGAGCAGCATCAGCATGAAGCCAAGTTTGAAAGGCGTGT
ATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACCAACGAGAAGCGCATC
CTGgtaagtccgaaatgtcatcgcgagggtgcgagaggagcaaaaagata
gagagggaaagcggaggtatgccgtaatactcggctggacataccaaacg
ccgtgaatagaccagagatcgagagtaggctgagatggagagagcatggt
gacaattcttgcttcggattcgtctatcattcagcaaagagtaattcacc
gatactcgcctccctcccttcttcactttcacattttattatcctacaat
caattcacagCTCATCAGACCGCCAAGGAGAACTTCCAGCGGATGAAGTT
GCAGCGCAAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGAAAAGGCGG
CGATCGCATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAAAAGAGGCC
GTACAGGAACACGAAATTCGAATGGAGCAAGCGAATCGGATTTTACTACA
GCAAGGGGCACGATAGAGTGGCGTGTGGGAAAGAGATGAATGAAGAAAGC
GGCATGGGCAGGGGTAGCGCGTGTATACGAAGATTGCCATAGGTTTAAAA
AGCTTGTTAGAAATCAACCAATGGGTGGAGAGAAAGAAGAGTACGCAATA
ATTTAAAAGGCCGAGAGAATTGAAAAGACAACCTAGTGGATGAAATAAAA
AGCAACCGATGTCTAAGTTCATACGCATAACTATCTGACAATTGATTTTC
CATTCTACTCAAGAAGCAGGAAAGCAAACAGAAAAAGCAGACATAAAGTG
ACTCTAAAACGGTGAGCGGACTTCTTTTGGGGTGCCAATACATGTGACAT
TGTAGCTCTATTTTTTTTCCCTATTCGTTTTCAGTAAGCTCCTTCATTCA
AGTTTCGTTGATCCCTCCCCCCCTCCTCCCACCTCCACCTCACCACCTAA
AGCATGGCACCGTATGCGTAGGCTTGAACGAAAATCCTTCCCAAAACCTG
TTCAGTGCCTTCTCTCTTACAGTTTTTCCTGACCCCTGCTCGACCCCCAA
GGCCTGGGCGTGGATCCCGTCCGTGACGAGGATAGAAGCAATCTCCTGGT
CCACTGCCCCCTTTATATCATTCCACATTGAGTCTCCGATCGCACACATC
TTCAACTCTGACAACCCTCCCTCCTTTCCCACCACTTCCTCCATAAGCTC
GCGGCAATGGGCATAAACCAAGGGGTAGGGCTTGCCAACGTAGATGACCC
TTCCCCCCTTCTTCTCATAAGCCTGCCCGATCATGCCGGGCATAGGGTCA
TTGTCCCCACCGGGCCTCACAATATCAGGGTTGGACACAATCATTGGCAG
TCCCCTTTCTACTGCCTTAGTGGCTAACGCGTCGAATTCGGCGCTCTCGT
GCAAGATGCGGCCAGGGCCAAACCGGAGTGGCGGGATGGAAGGATCAGAG
GACTCGAGTATAATAAACGGGCCTCGTGCTAGGAGGAAATCTGCTTCTTC
CAAGGAGGCAATTCTGCAACCCATTGACTGGACATAGTCGCGGTCATCAT
CTCCAGATCCAAAGACGAGAACGCGCCTCCCTTGGATCTTTGTGTAAGGA
GAGGAGGTGCGTGGAGGGGAGAGACCGAGAAAAGTGAGCTCACCGGAGGT
GACGACGTCAAGGTACTTGTCTGGGGTGAAGCCCATCTCGACCAGTCGGA
CGAGAGAGCCGGCCTTGCGTTTGGAGGAGTTAGAGAGGAGTATCACATGC
TTGCCGAGGGCAAGGAGCTGTTCCATGCAAGCGACGGCTTGTGGGTATGC
ATTGTAGCCGTCGTGCATGACCCCCCATTGATCGATGAGAAAGACATCGT
AGTGATGGGCAATATCCCGAAGCCCCGCAACGGAGTGGACGCTATCATTG
TCATTGCTTGATGAAAACATGCGCAGAGATCTTCTGGCGTTGAAAATGGA
GCAGCGGGATGGCGATGGGGAGATGAAGGCCTGACAGTAGCAGGATGGAG
AGGAGGCGAGCACGAGCGCCGTGGCAGCAAACACAGCACCGGCAGCGGCG
GTAACGGGATTGGGACGAACGCGGAGACGAATATGCTGGCGAAAGAAGGA
GGAGGAGGGGAGCATCTGTGTGCGGAGTTTTGTTACAAGGATGGTTATAA
ATGGTTTGTATAAACCATCCAAGGCCTTTTGGCGAGGCAGTGACCTGCAT
CGGGCTGCTGTAGGGCGGCATGGATTGTCTACAACAGGCCTAAATGGCAT
CCAAAAGCAAAGAAGCTGTATTAATAGTGAATCAAGTTAGCAGATAATGG
TATCACCGTGGAGAGAGAGAGATTTATTACAGCAGTCAAAGTGCATCCAG
CCGCGCAGTGCCAAGCAAGACTAGAAGATCGATCCAAAGCGAGCAACGTG
CGTGCTTTCCTTTC
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protein sequence of NO03G00130.1

>NO03G00130.1-protein ID=NO03G00130.1-protein|Name=NO03G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRGALLSTAVVALSLGLVRGGASGDASGNIPARLRATGHAEDNHELRKLH
DELVKEQHQHEAKFERRVSVEEIKALVAHQREAHPAHQTAKENFQRMKLQ
RKARFDSMLREGEKAAIASGHLLQGFIYGKEAVQEHEIRMEQANRILLQQ
GAR*
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Synonyms
Publications