NO03G00130.1, NO03G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00130.1
Unique NameNO03G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2407
Alignment locationchr3:35098..37761 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:35098..37761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00130.1 vs.
Match: EWM29985.1 (hypothetical protein Naga_100276g8 [Nannochloropsis gaditana])

HSP 1 Score: 117.5 bits (293), Expect = 3.700e-23
Identity = 81/160 (50.62%), Postives = 98/160 (61.25%), Query Frame = 0 
Query:    1 MRGALLSTAVVALSLGLVRGGASGDASGNIPARLRATGHAEDNHELRKLHDELVKEQHQH----------EAKFERRVSVEEIKALVAHQREAHPAHQTAKENFQRMKLQRKARFDSMLREGEKAAIASGHLLQGFIYGKEAVQEHEIRMEQANRILLQQ 151
            MR  L ST +VA  L LVRGG + D +GN  ++LRA          +K  D  + EQ Q           E +FER+ S EEIKAL++H++ A PA+QTAKE F R+ L RKARFD ML EGEKAA ASG    GFIYGK AV + E R EQANR LL +
Sbjct:    1 MRKLLFSTTIVAFVLILVRGGNAADLTGN-SSKLRAGKSTAGAVSTQKHVDYKLSEQQQEQQDKQQEQQQEVQFERKPSEEEIKALMSHRQAALPAYQTAKEQFDRVTLHRKARFDRMLEEGEKAAFASGDQSHGFIYGKMAVLKEETRREQANRRLLHR 159
The following BLAST results are available for this feature:
BLAST of NO03G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29985.13.700e-2350.63hypothetical protein Naga_100276g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00130NO03G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00130.1NO03G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00130.1.cds1NO03G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00130.1.cds2NO03G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00130.1 ID=NO03G00130.1|Name=NO03G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp
AACAGGCAGTCAAATTGTAGGCCTAGCCACCGAGCCTCGTGTTAATCATG
CGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTTGTCCCTGGGCTTGGT
GCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATATCCCGGCCCGGCTTC
GAGCCACCGGCCATGCTGAGGATAACCACGAACTGCGAAAGCTTCATGAT
GAACTTGTCAAGGAGCAGCATCAGCATGAAGCCAAGTTTGAAAGGCGTGT
ATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACCAACGAGAAGCGCATC
CTGCTCATCAGACCGCCAAGGAGAACTTCCAGCGGATGAAGTTGCAGCGC
AAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGAAAAGGCGGCGATCGC
ATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAAAAGAGGCCGTACAGG
AACACGAAATTCGAATGGAGCAAGCGAATCGGATTTTACTACAGCAAGGG
GCACGATAGAGTGGCGTGTGGGAAAGAGATGAATGAAGAAAGCGGCATGG
GCAGGGGTAGCGCGTGTATACGAAGATTGCCATAGGTTTAAAAAGCTTGT
TAGAAATCAACCAATGGGTGGAGAGAAAGAAGAGTACGCAATAATTTAAA
AGGCCGAGAGAATTGAAAAGACAACCTAGTGGATGAAATAAAAAGCAACC
GATGTCTAAGTTCATACGCATAACTATCTGACAATTGATTTTCCATTCTA
CTCAAGAAGCAGGAAAGCAAACAGAAAAAGCAGACATAAAGTGACTCTAA
AACGGTGAGCGGACTTCTTTTGGGGTGCCAATACATGTGACATTGTAGCT
CTATTTTTTTTCCCTATTCGTTTTCAGTAAGCTCCTTCATTCAAGTTTCG
TTGATCCCTCCCCCCCTCCTCCCACCTCCACCTCACCACCTAAAGCATGG
CACCGTATGCGTAGGCTTGAACGAAAATCCTTCCCAAAACCTGTTCAGTG
CCTTCTCTCTTACAGTTTTTCCTGACCCCTGCTCGACCCCCAAGGCCTGG
GCGTGGATCCCGTCCGTGACGAGGATAGAAGCAATCTCCTGGTCCACTGC
CCCCTTTATATCATTCCACATTGAGTCTCCGATCGCACACATCTTCAACT
CTGACAACCCTCCCTCCTTTCCCACCACTTCCTCCATAAGCTCGCGGCAA
TGGGCATAAACCAAGGGGTAGGGCTTGCCAACGTAGATGACCCTTCCCCC
CTTCTTCTCATAAGCCTGCCCGATCATGCCGGGCATAGGGTCATTGTCCC
CACCGGGCCTCACAATATCAGGGTTGGACACAATCATTGGCAGTCCCCTT
TCTACTGCCTTAGTGGCTAACGCGTCGAATTCGGCGCTCTCGTGCAAGAT
GCGGCCAGGGCCAAACCGGAGTGGCGGGATGGAAGGATCAGAGGACTCGA
GTATAATAAACGGGCCTCGTGCTAGGAGGAAATCTGCTTCTTCCAAGGAG
GCAATTCTGCAACCCATTGACTGGACATAGTCGCGGTCATCATCTCCAGA
TCCAAAGACGAGAACGCGCCTCCCTTGGATCTTTGTGTAAGGAGAGGAGG
TGCGTGGAGGGGAGAGACCGAGAAAAGTGAGCTCACCGGAGGTGACGACG
TCAAGGTACTTGTCTGGGGTGAAGCCCATCTCGACCAGTCGGACGAGAGA
GCCGGCCTTGCGTTTGGAGGAGTTAGAGAGGAGTATCACATGCTTGCCGA
GGGCAAGGAGCTGTTCCATGCAAGCGACGGCTTGTGGGTATGCATTGTAG
CCGTCGTGCATGACCCCCCATTGATCGATGAGAAAGACATCGTAGTGATG
GGCAATATCCCGAAGCCCCGCAACGGAGTGGACGCTATCATTGTCATTGC
TTGATGAAAACATGCGCAGAGATCTTCTGGCGTTGAAAATGGAGCAGCGG
GATGGCGATGGGGAGATGAAGGCCTGACAGTAGCAGGATGGAGAGGAGGC
GAGCACGAGCGCCGTGGCAGCAAACACAGCACCGGCAGCGGCGGTAACGG
GATTGGGACGAACGCGGAGACGAATATGCTGGCGAAAGAAGGAGGAGGAG
GGGAGCATCTGTGTGCGGAGTTTTGTTACAAGGATGGTTATAAATGGTTT
GTATAAACCATCCAAGGCCTTTTGGCGAGGCAGTGACCTGCATCGGGCTG
CTGTAGGGCGGCATGGATTGTCTACAACAGGCCTAAATGGCATCCAAAAG
CAAAGAAGCTGTATTAATAGTGAATCAAGTTAGCAGATAATGGTATCACC
GTGGAGAGAGAGAGATTTATTACAGCAGTCAAAGTGCATCCAGCCGCGCA
GTGCCAAGCAAGACTAGAAGATCGATCCAAAGCGAGCAACGTGCGTGCTT
TCCTTTC
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protein sequence of NO03G00130.1

>NO03G00130.1-protein ID=NO03G00130.1-protein|Name=NO03G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRGALLSTAVVALSLGLVRGGASGDASGNIPARLRATGHAEDNHELRKLH
DELVKEQHQHEAKFERRVSVEEIKALVAHQREAHPAHQTAKENFQRMKLQ
RKARFDSMLREGEKAAIASGHLLQGFIYGKEAVQEHEIRMEQANRILLQQ
GAR*
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mRNA from alignment at chr3:35098..37761+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00130.1 ID=NO03G00130.1|Name=NO03G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2664bp|location=Sequence derived from alignment at chr3:35098..37761+ (Nannochloropsis oceanica)
AACAGGCAGTCAAATTGTAGGCCTAGCCACCGAGCCTCGTGTTAATCATG
CGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTTGTCCCTGGGCTTGGT
GCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATATCCCGGCCCGGCTTC
GAGCCACCGGCCATGCTGAGGATAACCACGAACTGCGAAAGCTTCATGAT
GAACTTGTCAAGGAGCAGCATCAGCATGAAGCCAAGTTTGAAAGGCGTGT
ATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACCAACGAGAAGCGCATC
CTGGTAAGTCCGAAATGTCATCGCGAGGGTGCGAGAGGAGCAAAAAGATA
GAGAGGGAAAGCGGAGGTATGCCGTAATACTCGGCTGGACATACCAAACG
CCGTGAATAGACCAGAGATCGAGAGTAGGCTGAGATGGAGAGAGCATGGT
GACAATTCTTGCTTCGGATTCGTCTATCATTCAGCAAAGAGTAATTCACC
GATACTCGCCTCCCTCCCTTCTTCACTTTCACATTTTATTATCCTACAAT
CAATTCACAGCTCATCAGACCGCCAAGGAGAACTTCCAGCGGATGAAGTT
GCAGCGCAAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGAAAAGGCGG
CGATCGCATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAAAAGAGGCC
GTACAGGAACACGAAATTCGAATGGAGCAAGCGAATCGGATTTTACTACA
GCAAGGGGCACGATAGAGTGGCGTGTGGGAAAGAGATGAATGAAGAAAGC
GGCATGGGCAGGGGTAGCGCGTGTATACGAAGATTGCCATAGGTTTAAAA
AGCTTGTTAGAAATCAACCAATGGGTGGAGAGAAAGAAGAGTACGCAATA
ATTTAAAAGGCCGAGAGAATTGAAAAGACAACCTAGTGGATGAAATAAAA
AGCAACCGATGTCTAAGTTCATACGCATAACTATCTGACAATTGATTTTC
CATTCTACTCAAGAAGCAGGAAAGCAAACAGAAAAAGCAGACATAAAGTG
ACTCTAAAACGGTGAGCGGACTTCTTTTGGGGTGCCAATACATGTGACAT
TGTAGCTCTATTTTTTTTCCCTATTCGTTTTCAGTAAGCTCCTTCATTCA
AGTTTCGTTGATCCCTCCCCCCCTCCTCCCACCTCCACCTCACCACCTAA
AGCATGGCACCGTATGCGTAGGCTTGAACGAAAATCCTTCCCAAAACCTG
TTCAGTGCCTTCTCTCTTACAGTTTTTCCTGACCCCTGCTCGACCCCCAA
GGCCTGGGCGTGGATCCCGTCCGTGACGAGGATAGAAGCAATCTCCTGGT
CCACTGCCCCCTTTATATCATTCCACATTGAGTCTCCGATCGCACACATC
TTCAACTCTGACAACCCTCCCTCCTTTCCCACCACTTCCTCCATAAGCTC
GCGGCAATGGGCATAAACCAAGGGGTAGGGCTTGCCAACGTAGATGACCC
TTCCCCCCTTCTTCTCATAAGCCTGCCCGATCATGCCGGGCATAGGGTCA
TTGTCCCCACCGGGCCTCACAATATCAGGGTTGGACACAATCATTGGCAG
TCCCCTTTCTACTGCCTTAGTGGCTAACGCGTCGAATTCGGCGCTCTCGT
GCAAGATGCGGCCAGGGCCAAACCGGAGTGGCGGGATGGAAGGATCAGAG
GACTCGAGTATAATAAACGGGCCTCGTGCTAGGAGGAAATCTGCTTCTTC
CAAGGAGGCAATTCTGCAACCCATTGACTGGACATAGTCGCGGTCATCAT
CTCCAGATCCAAAGACGAGAACGCGCCTCCCTTGGATCTTTGTGTAAGGA
GAGGAGGTGCGTGGAGGGGAGAGACCGAGAAAAGTGAGCTCACCGGAGGT
GACGACGTCAAGGTACTTGTCTGGGGTGAAGCCCATCTCGACCAGTCGGA
CGAGAGAGCCGGCCTTGCGTTTGGAGGAGTTAGAGAGGAGTATCACATGC
TTGCCGAGGGCAAGGAGCTGTTCCATGCAAGCGACGGCTTGTGGGTATGC
ATTGTAGCCGTCGTGCATGACCCCCCATTGATCGATGAGAAAGACATCGT
AGTGATGGGCAATATCCCGAAGCCCCGCAACGGAGTGGACGCTATCATTG
TCATTGCTTGATGAAAACATGCGCAGAGATCTTCTGGCGTTGAAAATGGA
GCAGCGGGATGGCGATGGGGAGATGAAGGCCTGACAGTAGCAGGATGGAG
AGGAGGCGAGCACGAGCGCCGTGGCAGCAAACACAGCACCGGCAGCGGCG
GTAACGGGATTGGGACGAACGCGGAGACGAATATGCTGGCGAAAGAAGGA
GGAGGAGGGGAGCATCTGTGTGCGGAGTTTTGTTACAAGGATGGTTATAA
ATGGTTTGTATAAACCATCCAAGGCCTTTTGGCGAGGCAGTGACCTGCAT
CGGGCTGCTGTAGGGCGGCATGGATTGTCTACAACAGGCCTAAATGGCAT
CCAAAAGCAAAGAAGCTGTATTAATAGTGAATCAAGTTAGCAGATAATGG
TATCACCGTGGAGAGAGAGAGATTTATTACAGCAGTCAAAGTGCATCCAG
CCGCGCAGTGCCAAGCAAGACTAGAAGATCGATCCAAAGCGAGCAACGTG
CGTGCTTTCCTTTC
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Coding sequence (CDS) from alignment at chr3:35098..37761+

>NO03G00130.1 ID=NO03G00130.1|Name=NO03G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr3:35098..37761+ (Nannochloropsis oceanica)
ATGCGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTTGTCCCTGGGCTT
GGTGCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATATCCCGGCCCGGC
TTCGAGCCACCGGCCATGCTGAGGATAACCACGAACTGCGAAAGCTTCAT
GATGAACTTGTCAAGGAGCAGCATCAGCATGAAGCCAAGTTTGAAAGGCG
TGTATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACCAACGAGAAGCGC
ATCCTGCTCATCAGACCGCCAAGGAGAACTTCCAGCGGATGAAGTTGCAG
CGCAAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGAAAAGGCGGCGAT
CGCATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAAAAGAGGCCGTAC
AGGAACACGAAATTCGAATGGAGCAAGCGAATCGGATTTTACTACAGCAA
GGGGCACGATAG
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Synonyms
Publications