NO03G00120, NO03G00120 (gene) Nannochloropsis oceanica

Overview
NameNO03G00120
Unique NameNO03G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1783
Alignment locationchr3:33098..34880 +

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide repeat family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:33098..34880 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Homology
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BLAST of NO03G00120 vs. NCBI_GenBank
Match: EWM29988.1 (tetratricopeptide repeat family [Nannochloropsis gaditana])

HSP 1 Score: 270.0 bits (689), Expect = 1.400e-68
Identity = 223/454 (49.12%), Postives = 274/454 (60.35%), Query Frame = 0 
Query:    8 TSEDENVQRTQSLEALRKCTQEVAHYSDPQTEQEYVKLIQTLHKKATALGALHQHSQRVACVEKIIKLAKKGLPVNNLSLPKALETLAECHAMMGDKPTALTLFKEALDTRAACGLPEAHPSSTDSIKRMADLYRDQADFEQALELHIKVLELRRSLLSPGEARRGEGDAVMAEALHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHXXXXXXXXXXXXXXXXXXXXXXXXMMYTLASTYAKNAEFTLAQPIYTELIARRRDEDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEAMAGVGGGWGGVDPMGMACTLNNSALLYRAMENYPQVEKQMEEAIDWLKRAVPAEHYYVTNMKLSLAAAQKEGEEKKAGTYDPTKY 462
            T +  N  R Q++  LR+C+Q++A YSDPQ +++YVKLI  L KKA AL AL+Q+SQ  AC+EKI+KLA+  LP +NLSLP ALE LAEC A+MGD+  A++LFKE L+ R   G+ E HPS T  +KRM DL+RDQ   ++ALE++++VL LRRS+  P   ++    A +AEALHD                                                  XXXXXXXXXXXXXXXXX    MMY LASTYAKNAE+TLAQPIYTELIARRR+EDP                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         A +  G      G+ PM MA  LNN ALLYRAM+ Y Q E+Q+EEA+ W+KRAVP+ H Y+T+M+ SL+A + E ++K AGTYDPT Y
Sbjct:    4 TPDSCNTGRAQAVRTLRQCSQDIAQYSDPQCDEDYVKLIGILEKKARALDALNQYSQMSACLEKIVKLARSSLPSHNLSLPNALEGLAECRAIMGDRVAAVSLFKECLEVRELAGMLETHPSQTACLKRMGDLHRDQDSLDKALEIYLEVLSLRRSIAKPDAGKKEV--AKLAEALHDVGTTYHLCGEFERAIPFLKDALELKEKIASTRSGKGGSRGEEVKDA--TTXXXXXXXXXXXXXXXXXVFMEMMYGLASTYAKNAEYTLAQPIYTELIARRRNEDPPNYIKLAQALTNVGAMHMEAGNCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRRLEDHDRALKLFQASLAMQRARGAASAMG-KDSLEGISPMSMAGILNNLALLYRAMDKYTQAEQQLEEAVAWVKRAVPSGHPYITSMEKSLSALRHEAKDKAAGTYDPTMY 452
The following BLAST results are available for this feature:
BLAST of NO03G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29988.11.400e-6849.12tetratricopeptide repeat family [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL071nonsL071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR055ngnoR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005904NSK005904Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00120.1NO03G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634175gene_10296Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100276g7gene656Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00120.1NO03G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00120 ID=NO03G00120|Name=NO03G00120|organism=Nannochloropsis oceanica|type=gene|length=1783bp
ACACACAGCCCTTTACGTCTTGGGTGTCTTGCCGAGTTGTTGCTGCTGCG
TACTCTTTCTCGTCCCACACAGGATCACAACCCCTTCCATCTCTCCGCAC
CCCGGCGTGTCACCATATCACCACCCAAAGCAGAAATCATACCATGTCCA
CTTCTCACATCTTCACCAGCGAGGACGAGAACGTCCAACGAACTCAGTCC
CTGGAAGCTCTGCGAAAATGCACCCAGGAAGTCGCCCACTACAGCGACCC
GCAGACCGAGCAGGAATATGTCAAGCTGATCCAGACATTGCACAAGAAAG
CCACTGCGTTGGGCGCTCTGCATCAGCACAGCCAGCGAGTGGCGTGCGTG
GAGAAGATAATCAAACTTGCCAAGAAAGGTCTGCCTGTCAATAATCTCTC
TCTCCCTAAGGCGCTGGAGACGCTGGCCGAGTGTCACGCTATGATGGGGG
ATAAACCTACGGCCCTGACCTTGTTCAAAGAAGCGCTCGATACCCGCGCG
GCTTGTGGTCTACCCGAGGCCCACCCGTCTTCGACAGATTCAATAAAGCG
CATGGCAGACTTGTACAGAGATCAAGCAGATTTTGAGCAGGCCTTGGAAT
TGCACATCAAAGTCCTTGAGCTGCGGCGGTCGTTGCTATCGCCAGGCGAG
GCCCGAAGGGGAGAAGGAGATGCGGTGATGGCAGAGGCTTTGCATGACGT
CGGAACCACATATCATTGCCTGGGCCATTTTGAACGGGCTATTCCTTATG
CTAAAAAGGCATTGGAAATCAAGCGGGAGTTGGTGGCGAGAAACAAGGCA
CGGAGGGAGGAAGGGGAGAAAAGGAGGGTGGAGGGGCATGAGGAGGAGGA
GGAGGAAGGGGAGGAGGCGGAGGAAGAGGATGCCTCTGATGAGTACGAGA
AATTGATGGAAATGATGTACACACTTGCTTCTACCTACGCCAAGAACGCC
GAATTCACGCTTGCCCAGCCCATTTACACGGAGCTGATTGCCCGCCGTCG
AGATGAAGATCCCCCAAACTACATCAAACTGGCCAAGGCCCTGAACAATG
CCGGGGCCATGCACATGGAGGCGGGTGACGGCGCCCTTGCTCTTCCCTTT
TATGAAGAAAGTCTAGATATATTAAGAATGGTGCTGCCGGCGGCCCACCC
GGAGATCGCGCTTGCCATGGGAAATCTTGCGGAAGTGTACAGGACTGCGG
GAGAGAATGAGAAGGCCTTGGTCTTGTTTGAAACCTCTCTGACCATGCAG
AGGCGGAGAGCAGCAGAGGCGATGGCAGGGGTAGGAGGAGGGTGGGGGGG
CGTGGATCCGATGGGCATGGCGTGCACGTTGAACAATTCGGCGCTGCTGT
ATCGGGCCATGGAGAATTACCCACAGGTGGAGAAGCAGATGGAGGAGGCG
ATTGATTGGCTAAAGCGTGCGGTACCAGCGGAACATTACTACGTGACTAA
CATGAAATTGAGCTTGGCGGCCGCGCAGAAGGAAGGGGAAGAGAAGAAGG
CGGGGACTTACGATCCCACTAAATATGGTATGGTAGGACTGTTCGAGAAG
GCACGAAGGGATGAGAACCTTCCCTAAAGGACGGGAAGTAAGTGGATGTC
TCAGAGGGAAGAGAAAAGTAAGTCGACTGCAATAAGGAGCGAGCGACACG
TAGGCGGTCGGTAAGGTTCTTTCTAAAAGTAATGATAAGCAAGTTTGGTC
CTTGAGAGGTTATGGTGACTTATTAGGATGCTGCGCTTTTTTTGGCATGT
GATTCTTTTCACTTTTCGATTTACCTGAATTGA
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protein sequence of NO03G00120.1

>NO03G00120.1-protein ID=NO03G00120.1-protein|Name=NO03G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MSTSHIFTSEDENVQRTQSLEALRKCTQEVAHYSDPQTEQEYVKLIQTLH
KKATALGALHQHSQRVACVEKIIKLAKKGLPVNNLSLPKALETLAECHAM
MGDKPTALTLFKEALDTRAACGLPEAHPSSTDSIKRMADLYRDQADFEQA
LELHIKVLELRRSLLSPGEARRGEGDAVMAEALHDVGTTYHCLGHFERAI
PYAKKALEIKRELVARNKARREEGEKRRVEGHEEEEEEGEEAEEEDASDE
YEKLMEMMYTLASTYAKNAEFTLAQPIYTELIARRRDEDPPNYIKLAKAL
NNAGAMHMEAGDGALALPFYEESLDILRMVLPAAHPEIALAMGNLAEVYR
TAGENEKALVLFETSLTMQRRRAAEAMAGVGGGWGGVDPMGMACTLNNSA
LLYRAMENYPQVEKQMEEAIDWLKRAVPAEHYYVTNMKLSLAAAQKEGEE
KKAGTYDPTKYGMVGLFEKARRDENLP*
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Synonyms
Publications