NO03G00120.1, NO03G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00120.1
Unique NameNO03G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1783
Alignment locationchr3:33098..34880 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:33098..34880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00120.1 vs.
Match: EWM29988.1 (tetratricopeptide repeat family [Nannochloropsis gaditana])

HSP 1 Score: 474.6 bits (1220), Expect = 3.700e-130
Identity = 259/455 (56.92%), Postives = 332/455 (72.97%), Query Frame = 0 
Query:    8 TSEDENVQRTQSLEALRKCTQEVAHYSDPQTEQEYVKLIQTLHKKATALGALHQHSQRVACVEKIIKLAKKGLPVNNLSLPKALETLAECHAMMGDKPTALTLFKEALDTRAACGLPEAHPSSTDSIKRMADLYRDQADFEQALELHIKVLELRRSLLSPGEARRGEGDAVMAEALHDVGTTYHCLGHFERAIPYAKKALEIKRELVARNKARREEGEKRRVEGHEEEEEEGEEAE-EEDASDEYEKLMEMMYTLASTYAKNAEFTLAQPIYTELIARRRDEDPPNYIKLAKALNNAGAMHMEAGDGALALPFYEESLDILRMVLPAAHPEIALAMGNLAEVYRTAGENEKALVLFETSLTMQRRRAAEAMAGVGGGWGGVDPMGMACTLNNSALLYRAMENYPQVEKQMEEAIDWLKRAVPAEHYYVTNMKLSLAAAQKEGEEKKAGTYDPTKY 462
            T +  N  R Q++  LR+C+Q++A YSDPQ +++YVKLI  L KKA AL AL+Q+SQ  AC+EKI+KLA+  LP +NLSLP ALE LAEC A+MGD+  A++LFKE L+ R   G+ E HPS T  +KRM DL+RDQ   ++ALE++++VL LRRS+  P   ++    A +AEALHDVGTTYH  G FERAIP+ K ALE+K ++ +    R  +G  R  E  +   EE E+ +  E+  +E E  MEMMY LASTYAKNAE+TLAQPIYTELIARRR+EDPPNYIKLA+AL N GAMHMEAG+ ALALPF EE+LDILRMVLP +HP+IA A+GNL EVYR   ++++AL LF+ SL MQR R A +  G      G+ PM MA  LNN ALLYRAM+ Y Q E+Q+EEA+ W+KRAVP+ H Y+T+M+ SL+A + E ++K AGTYDPT Y
Sbjct:    4 TPDSCNTGRAQAVRTLRQCSQDIAQYSDPQCDEDYVKLIGILEKKARALDALNQYSQMSACLEKIVKLARSSLPSHNLSLPNALEGLAECRAIMGDRVAAVSLFKECLEVRELAGMLETHPSQTACLKRMGDLHRDQDSLDKALEIYLEVLSLRRSIAKPDAGKKEV--AKLAEALHDVGTTYHLCGEFERAIPFLKDALELKEKIAS---TRSGKGGSRGEEVKDATTEESEKDDIVEEGQEEEEVFMEMMYGLASTYAKNAEYTLAQPIYTELIARRRNEDPPNYIKLAQALTNVGAMHMEAGNCALALPFQEEALDILRMVLPESHPQIAQALGNLGEVYRRLEDHDRALKLFQASLAMQRARGAASAMG-KDSLEGISPMSMAGILNNLALLYRAMDKYTQAEQQLEEAVAWVKRAVPSGHPYITSMEKSLSALRHEAKDKAAGTYDPTMY 452
The following BLAST results are available for this feature:
BLAST of NO03G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29988.13.700e-13056.92tetratricopeptide repeat family [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00120NO03G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00120.1NO03G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00120.1.cds1NO03G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00120.1 ID=NO03G00120.1|Name=NO03G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp
ACACACAGCCCTTTACGTCTTGGGTGTCTTGCCGAGTTGTTGCTGCTGCG
TACTCTTTCTCGTCCCACACAGGATCACAACCCCTTCCATCTCTCCGCAC
CCCGGCGTGTCACCATATCACCACCCAAAGCAGAAATCATACCATGTCCA
CTTCTCACATCTTCACCAGCGAGGACGAGAACGTCCAACGAACTCAGTCC
CTGGAAGCTCTGCGAAAATGCACCCAGGAAGTCGCCCACTACAGCGACCC
GCAGACCGAGCAGGAATATGTCAAGCTGATCCAGACATTGCACAAGAAAG
CCACTGCGTTGGGCGCTCTGCATCAGCACAGCCAGCGAGTGGCGTGCGTG
GAGAAGATAATCAAACTTGCCAAGAAAGGTCTGCCTGTCAATAATCTCTC
TCTCCCTAAGGCGCTGGAGACGCTGGCCGAGTGTCACGCTATGATGGGGG
ATAAACCTACGGCCCTGACCTTGTTCAAAGAAGCGCTCGATACCCGCGCG
GCTTGTGGTCTACCCGAGGCCCACCCGTCTTCGACAGATTCAATAAAGCG
CATGGCAGACTTGTACAGAGATCAAGCAGATTTTGAGCAGGCCTTGGAAT
TGCACATCAAAGTCCTTGAGCTGCGGCGGTCGTTGCTATCGCCAGGCGAG
GCCCGAAGGGGAGAAGGAGATGCGGTGATGGCAGAGGCTTTGCATGACGT
CGGAACCACATATCATTGCCTGGGCCATTTTGAACGGGCTATTCCTTATG
CTAAAAAGGCATTGGAAATCAAGCGGGAGTTGGTGGCGAGAAACAAGGCA
CGGAGGGAGGAAGGGGAGAAAAGGAGGGTGGAGGGGCATGAGGAGGAGGA
GGAGGAAGGGGAGGAGGCGGAGGAAGAGGATGCCTCTGATGAGTACGAGA
AATTGATGGAAATGATGTACACACTTGCTTCTACCTACGCCAAGAACGCC
GAATTCACGCTTGCCCAGCCCATTTACACGGAGCTGATTGCCCGCCGTCG
AGATGAAGATCCCCCAAACTACATCAAACTGGCCAAGGCCCTGAACAATG
CCGGGGCCATGCACATGGAGGCGGGTGACGGCGCCCTTGCTCTTCCCTTT
TATGAAGAAAGTCTAGATATATTAAGAATGGTGCTGCCGGCGGCCCACCC
GGAGATCGCGCTTGCCATGGGAAATCTTGCGGAAGTGTACAGGACTGCGG
GAGAGAATGAGAAGGCCTTGGTCTTGTTTGAAACCTCTCTGACCATGCAG
AGGCGGAGAGCAGCAGAGGCGATGGCAGGGGTAGGAGGAGGGTGGGGGGG
CGTGGATCCGATGGGCATGGCGTGCACGTTGAACAATTCGGCGCTGCTGT
ATCGGGCCATGGAGAATTACCCACAGGTGGAGAAGCAGATGGAGGAGGCG
ATTGATTGGCTAAAGCGTGCGGTACCAGCGGAACATTACTACGTGACTAA
CATGAAATTGAGCTTGGCGGCCGCGCAGAAGGAAGGGGAAGAGAAGAAGG
CGGGGACTTACGATCCCACTAAATATGGTATGGTAGGACTGTTCGAGAAG
GCACGAAGGGATGAGAACCTTCCCTAAAGGACGGGAAGTAAGTGGATGTC
TCAGAGGGAAGAGAAAAGTAAGTCGACTGCAATAAGGAGCGAGCGACACG
TAGGCGGTCGGTAAGGTTCTTTCTAAAAGTAATGATAAGCAAGTTTGGTC
CTTGAGAGGTTATGGTGACTTATTAGGATGCTGCGCTTTTTTTGGCATGT
GATTCTTTTCACTTTTCGATTTACCTGAATTGA
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protein sequence of NO03G00120.1

>NO03G00120.1-protein ID=NO03G00120.1-protein|Name=NO03G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MSTSHIFTSEDENVQRTQSLEALRKCTQEVAHYSDPQTEQEYVKLIQTLH
KKATALGALHQHSQRVACVEKIIKLAKKGLPVNNLSLPKALETLAECHAM
MGDKPTALTLFKEALDTRAACGLPEAHPSSTDSIKRMADLYRDQADFEQA
LELHIKVLELRRSLLSPGEARRGEGDAVMAEALHDVGTTYHCLGHFERAI
PYAKKALEIKRELVARNKARREEGEKRRVEGHEEEEEEGEEAEEEDASDE
YEKLMEMMYTLASTYAKNAEFTLAQPIYTELIARRRDEDPPNYIKLAKAL
NNAGAMHMEAGDGALALPFYEESLDILRMVLPAAHPEIALAMGNLAEVYR
TAGENEKALVLFETSLTMQRRRAAEAMAGVGGGWGGVDPMGMACTLNNSA
LLYRAMENYPQVEKQMEEAIDWLKRAVPAEHYYVTNMKLSLAAAQKEGEE
KKAGTYDPTKYGMVGLFEKARRDENLP*
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mRNA from alignment at chr3:33098..34880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00120.1 ID=NO03G00120.1|Name=NO03G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp|location=Sequence derived from alignment at chr3:33098..34880+ (Nannochloropsis oceanica)
ACACACAGCCCTTTACGTCTTGGGTGTCTTGCCGAGTTGTTGCTGCTGCG
TACTCTTTCTCGTCCCACACAGGATCACAACCCCTTCCATCTCTCCGCAC
CCCGGCGTGTCACCATATCACCACCCAAAGCAGAAATCATACCATGTCCA
CTTCTCACATCTTCACCAGCGAGGACGAGAACGTCCAACGAACTCAGTCC
CTGGAAGCTCTGCGAAAATGCACCCAGGAAGTCGCCCACTACAGCGACCC
GCAGACCGAGCAGGAATATGTCAAGCTGATCCAGACATTGCACAAGAAAG
CCACTGCGTTGGGCGCTCTGCATCAGCACAGCCAGCGAGTGGCGTGCGTG
GAGAAGATAATCAAACTTGCCAAGAAAGGTCTGCCTGTCAATAATCTCTC
TCTCCCTAAGGCGCTGGAGACGCTGGCCGAGTGTCACGCTATGATGGGGG
ATAAACCTACGGCCCTGACCTTGTTCAAAGAAGCGCTCGATACCCGCGCG
GCTTGTGGTCTACCCGAGGCCCACCCGTCTTCGACAGATTCAATAAAGCG
CATGGCAGACTTGTACAGAGATCAAGCAGATTTTGAGCAGGCCTTGGAAT
TGCACATCAAAGTCCTTGAGCTGCGGCGGTCGTTGCTATCGCCAGGCGAG
GCCCGAAGGGGAGAAGGAGATGCGGTGATGGCAGAGGCTTTGCATGACGT
CGGAACCACATATCATTGCCTGGGCCATTTTGAACGGGCTATTCCTTATG
CTAAAAAGGCATTGGAAATCAAGCGGGAGTTGGTGGCGAGAAACAAGGCA
CGGAGGGAGGAAGGGGAGAAAAGGAGGGTGGAGGGGCATGAGGAGGAGGA
GGAGGAAGGGGAGGAGGCGGAGGAAGAGGATGCCTCTGATGAGTACGAGA
AATTGATGGAAATGATGTACACACTTGCTTCTACCTACGCCAAGAACGCC
GAATTCACGCTTGCCCAGCCCATTTACACGGAGCTGATTGCCCGCCGTCG
AGATGAAGATCCCCCAAACTACATCAAACTGGCCAAGGCCCTGAACAATG
CCGGGGCCATGCACATGGAGGCGGGTGACGGCGCCCTTGCTCTTCCCTTT
TATGAAGAAAGTCTAGATATATTAAGAATGGTGCTGCCGGCGGCCCACCC
GGAGATCGCGCTTGCCATGGGAAATCTTGCGGAAGTGTACAGGACTGCGG
GAGAGAATGAGAAGGCCTTGGTCTTGTTTGAAACCTCTCTGACCATGCAG
AGGCGGAGAGCAGCAGAGGCGATGGCAGGGGTAGGAGGAGGGTGGGGGGG
CGTGGATCCGATGGGCATGGCGTGCACGTTGAACAATTCGGCGCTGCTGT
ATCGGGCCATGGAGAATTACCCACAGGTGGAGAAGCAGATGGAGGAGGCG
ATTGATTGGCTAAAGCGTGCGGTACCAGCGGAACATTACTACGTGACTAA
CATGAAATTGAGCTTGGCGGCCGCGCAGAAGGAAGGGGAAGAGAAGAAGG
CGGGGACTTACGATCCCACTAAATATGGTATGGTAGGACTGTTCGAGAAG
GCACGAAGGGATGAGAACCTTCCCTAAAGGACGGGAAGTAAGTGGATGTC
TCAGAGGGAAGAGAAAAGTAAGTCGACTGCAATAAGGAGCGAGCGACACG
TAGGCGGTCGGTAAGGTTCTTTCTAAAAGTAATGATAAGCAAGTTTGGTC
CTTGAGAGGTTATGGTGACTTATTAGGATGCTGCGCTTTTTTTGGCATGT
GATTCTTTTCACTTTTCGATTTACCTGAATTGA
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Coding sequence (CDS) from alignment at chr3:33098..34880+

>NO03G00120.1 ID=NO03G00120.1|Name=NO03G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr3:33098..34880+ (Nannochloropsis oceanica)
ATGTCCACTTCTCACATCTTCACCAGCGAGGACGAGAACGTCCAACGAAC
TCAGTCCCTGGAAGCTCTGCGAAAATGCACCCAGGAAGTCGCCCACTACA
GCGACCCGCAGACCGAGCAGGAATATGTCAAGCTGATCCAGACATTGCAC
AAGAAAGCCACTGCGTTGGGCGCTCTGCATCAGCACAGCCAGCGAGTGGC
GTGCGTGGAGAAGATAATCAAACTTGCCAAGAAAGGTCTGCCTGTCAATA
ATCTCTCTCTCCCTAAGGCGCTGGAGACGCTGGCCGAGTGTCACGCTATG
ATGGGGGATAAACCTACGGCCCTGACCTTGTTCAAAGAAGCGCTCGATAC
CCGCGCGGCTTGTGGTCTACCCGAGGCCCACCCGTCTTCGACAGATTCAA
TAAAGCGCATGGCAGACTTGTACAGAGATCAAGCAGATTTTGAGCAGGCC
TTGGAATTGCACATCAAAGTCCTTGAGCTGCGGCGGTCGTTGCTATCGCC
AGGCGAGGCCCGAAGGGGAGAAGGAGATGCGGTGATGGCAGAGGCTTTGC
ATGACGTCGGAACCACATATCATTGCCTGGGCCATTTTGAACGGGCTATT
CCTTATGCTAAAAAGGCATTGGAAATCAAGCGGGAGTTGGTGGCGAGAAA
CAAGGCACGGAGGGAGGAAGGGGAGAAAAGGAGGGTGGAGGGGCATGAGG
AGGAGGAGGAGGAAGGGGAGGAGGCGGAGGAAGAGGATGCCTCTGATGAG
TACGAGAAATTGATGGAAATGATGTACACACTTGCTTCTACCTACGCCAA
GAACGCCGAATTCACGCTTGCCCAGCCCATTTACACGGAGCTGATTGCCC
GCCGTCGAGATGAAGATCCCCCAAACTACATCAAACTGGCCAAGGCCCTG
AACAATGCCGGGGCCATGCACATGGAGGCGGGTGACGGCGCCCTTGCTCT
TCCCTTTTATGAAGAAAGTCTAGATATATTAAGAATGGTGCTGCCGGCGG
CCCACCCGGAGATCGCGCTTGCCATGGGAAATCTTGCGGAAGTGTACAGG
ACTGCGGGAGAGAATGAGAAGGCCTTGGTCTTGTTTGAAACCTCTCTGAC
CATGCAGAGGCGGAGAGCAGCAGAGGCGATGGCAGGGGTAGGAGGAGGGT
GGGGGGGCGTGGATCCGATGGGCATGGCGTGCACGTTGAACAATTCGGCG
CTGCTGTATCGGGCCATGGAGAATTACCCACAGGTGGAGAAGCAGATGGA
GGAGGCGATTGATTGGCTAAAGCGTGCGGTACCAGCGGAACATTACTACG
TGACTAACATGAAATTGAGCTTGGCGGCCGCGCAGAAGGAAGGGGAAGAG
AAGAAGGCGGGGACTTACGATCCCACTAAATATGGTATGGTAGGACTGTT
CGAGAAGGCACGAAGGGATGAGAACCTTCCCTAA
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Synonyms
Publications